Rh1DG053500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0004259
Physical Location & Seq
Forward (+)
8576523 .. 8578761
2239 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG053500.1

Sequence Viewer

Length: 405 bp
ATGAACATGAGCAATACCCTTCGAGTAGGCAACTGTGGAACCCCCATGCAGGATGAGCCGCCCGAGGTCCCTCCAGCTCCTCCGAATTCACCGACTGGTGTGGTGGAAGTCCATACTCATCCTCCTTTTCCTCTTCATGCAGACGATCCGACAAATCCATTTCATAACCTCAATGTCGAAGAAGAACTGGAGACTGTTGCCTATGATAGATATTTTGACAATCATGTCTCCCCAACTTCACATATGGAGTATGCTTTCTTTGATCAATATGGCACCTTCCTTGATAATGTGCCAATCGGTGATGTTATGGATGATACCCCTCCTGCTGCTGGTGATTCAGATGTATCACTGCTATTTGCTTGTGGGTCGTCACACTTTGGTTTGGCAAGGGCAGAGCTTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

134

Amino Acids

14.64

Weight (kDa)

4.18

Isoelectric Point (pI)

51.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 224
AccB1I GGYRCC 1 cut(s) 272
AciI CCGC 1 cut(s) 59
AclWI GGATC 1 cut(s) 140
AcsI RAATTY 1 cut(s) 85
AfiI CCNNNNNNNGG 2 cut(s) 49, 329
AluBI AGCT 2 cut(s) 77, 397
AluI AGCT 2 cut(s) 77, 397
Alw26I GTCTC 2 cut(s) 185, 232
AlwI GGATC 1 cut(s) 140
Ama87I CYCGRG 1 cut(s) 62
ApeKI GCWGC 1 cut(s) 326
ApoI RAATTY 1 cut(s) 85
AspS9I GGNCC 1 cut(s) 67
AsuHPI GGTGA 3 cut(s) 81, 311, 344
AvaI CYCGRG 1 cut(s) 62
AvaII GGWCC 1 cut(s) 67
BanI GGYRCC 1 cut(s) 272
BbvI GCAGC 1 cut(s) 313
BclI TGATCA 1 cut(s) 262
BcoDI GTCTC 2 cut(s) 185, 232
BisI GCNGC 2 cut(s) 59, 327
BlsI GCNGC 2 cut(s) 60, 328
Bme18I GGWCC 1 cut(s) 67
BmeT110I CYCGRG 1 cut(s) 62
BmgT120I GGNCC 1 cut(s) 67
BmiI GGNNCC 3 cut(s) 40, 69, 274
BpmI CTGGAG 2 cut(s) 57, 209
BsaJI CCNNGG 1 cut(s) 63
BsaXI ACNNNNNCTCC 2 cut(s) 106, 136
Bsc4I CCNNNNNNNGG 2 cut(s) 49, 329
Bse1I ACTGG 2 cut(s) 100, 192
BseDI CCNNGG 1 cut(s) 63
BseGI GGATG 3 cut(s) 58, 118, 316
BseLI CCNNNNNNNGG 2 cut(s) 49, 329
BseNI ACTGG 2 cut(s) 100, 192
BseRI GAGGAG 1 cut(s) 69
BseXI GCAGC 1 cut(s) 313
BshNI GGYRCC 1 cut(s) 272
BsiHKCI CYCGRG 1 cut(s) 62
BslFI GGGAC 1 cut(s) 53
BslI CCNNNNNNNGG 2 cut(s) 49, 329
BsmAI GTCTC 2 cut(s) 185, 232
BsmFI GGGAC 1 cut(s) 53
BsoBI CYCGRG 1 cut(s) 62
Bsp143I GATC 2 cut(s) 145, 262
BspACI CCGC 1 cut(s) 59
BspLI GGNNCC 3 cut(s) 40, 69, 274
BspPI GGATC 1 cut(s) 140
BspT107I GGYRCC 1 cut(s) 272
BsrI ACTGG 2 cut(s) 100, 192
BssECI CCNNGG 1 cut(s) 63
BssMI GATC 2 cut(s) 145, 262
Bst4CI ACNGT 2 cut(s) 35, 196
Bst6I CTCTTC 1 cut(s) 138
BstF5I GGATG 3 cut(s) 58, 118, 316
BstKTI GATC 2 cut(s) 148, 265
BstMAI GTCTC 2 cut(s) 185, 232
BstMBI GATC 2 cut(s) 145, 262
BstMWI GCNNNNNNNGC 1 cut(s) 55
BstV1I GCAGC 1 cut(s) 313
BtsCI GGATG 3 cut(s) 58, 118, 316
BtsI GCAGTG 1 cut(s) 347
BtsIMutI CAGTG 1 cut(s) 347
Cfr13I GGNCC 1 cut(s) 67
CviAII CATG 4 cut(s) 7, 46, 137, 224
CviJI RGCY 3 cut(s) 58, 77, 397
CviKI_1 RGCY 3 cut(s) 58, 77, 397
DpnI GATC 2 cut(s) 147, 264
DpnII GATC 2 cut(s) 145, 262
DrdI GACNNNNNNGTC 1 cut(s) 224
DseDI GACNNNNNNGTC 1 cut(s) 224
Eam1104I CTCTTC 1 cut(s) 138
EarI CTCTTC 1 cut(s) 138
Eco47I GGWCC 1 cut(s) 67
Eco88I CYCGRG 1 cut(s) 62
EcoO109I RGGNCCY 1 cut(s) 67
EcoRI GAATTC 1 cut(s) 85
FaeI CATG 4 cut(s) 10, 49, 140, 227
FaqI GGGAC 1 cut(s) 53
FatI CATG 4 cut(s) 6, 45, 136, 223
FauNDI CATATG 1 cut(s) 243
FbaI TGATCA 1 cut(s) 262
Fnu4HI GCNGC 2 cut(s) 59, 327
FokI GGATG 3 cut(s) 65, 105, 323
Fsp4HI GCNGC 2 cut(s) 59, 327
GluI GCNGC 2 cut(s) 59, 327
GsuI CTGGAG 2 cut(s) 57, 209
Hin1II CATG 4 cut(s) 10, 49, 140, 227
HinfI GANTC 1 cut(s) 335
HphI GGTGA 3 cut(s) 81, 311, 344
Hpy188I TCNGA 3 cut(s) 84, 150, 340
HpyAV CCTTC 2 cut(s) 29, 286
HpyCH4III ACNGT 2 cut(s) 35, 196
HpyCH4V TGCA 2 cut(s) 49, 140
HpyF10VI GCNNNNNNNGC 1 cut(s) 55
Hsp92II CATG 4 cut(s) 10, 49, 140, 227
Ksp22I TGATCA 1 cut(s) 262
Kzo9I GATC 2 cut(s) 145, 262
LmnI GCTCC 1 cut(s) 82
LpnPI CCDG 6 cut(s) 35, 81, 87, 173, 315, 336
Lsp1109I GCAGC 1 cut(s) 313
MaeIII GTNAC 1 cut(s) 369
MalI GATC 2 cut(s) 147, 264
MboI GATC 2 cut(s) 145, 262
MboII GAAGA 3 cut(s) 125, 191, 194
MluCI AATT 1 cut(s) 85
MmeI TCCRAC 1 cut(s) 173
MnlI CCTC 7 cut(s) 58, 81, 90, 132, 141, 179, 330
MwoI GCNNNNNNNGC 1 cut(s) 55
NdeI CATATG 1 cut(s) 243
NdeII GATC 2 cut(s) 145, 262
NlaIII CATG 4 cut(s) 10, 49, 140, 227
NlaIV GGNNCC 3 cut(s) 40, 69, 274
NmuCI GTSAC 1 cut(s) 369
PfeI GAWTC 1 cut(s) 335
PkrI GCNGC 2 cut(s) 60, 328
PpuMI RGGWCCY 1 cut(s) 67
Psp5II RGGWCCY 1 cut(s) 67
PspN4I GGNNCC 3 cut(s) 40, 69, 274
PspPI GGNCC 1 cut(s) 67
PspPPI RGGWCCY 1 cut(s) 67
SatI GCNGC 2 cut(s) 59, 327
Sau3AI GATC 2 cut(s) 145, 262
Sau96I GGNCC 1 cut(s) 67
SetI ASST 5 cut(s) 69, 79, 171, 278, 399
SinI GGWCC 1 cut(s) 67
Sse9I AATT 1 cut(s) 85
SsiI CCGC 1 cut(s) 59
TaaI ACNGT 2 cut(s) 35, 196
TaqI TCGA 2 cut(s) 22, 177
TasI AATT 1 cut(s) 85
TauI GCSGC 1 cut(s) 61
TfiI GAWTC 1 cut(s) 335
TscAI CASTG 1 cut(s) 354
TseFI GTSAC 1 cut(s) 369
TseI GCWGC 1 cut(s) 326
Tsp45I GTSAC 1 cut(s) 369
TspDTI ATGAA 3 cut(s) 17, 125, 152
TspRI CASTG 1 cut(s) 354
VpaK11BI GGWCC 1 cut(s) 67
XapI RAATTY 1 cut(s) 85
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.