Rh3DG341100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0004259
Physical Location & Seq
Reverse (-)
38123316 .. 38123759
444 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG341100.1

Sequence Viewer

Length: 345 bp
ATGTCGTGGACCGACGACAACTGCCCTCTTCAGGAATGGTGTCACTTGTGCCATCAGATTCAGCCTTATGCGAGGGGACCTAAGGCCGCAGAATGCCCATCTCGTGTAGTTGAACACCCTCGTCAAGCACAACCAGATGAGAGTCCGAGATGCCCTTTATGTGAGGGAAACATGAGTATCATGGCACATTGGGTGCACGAAATAAAGAGGGAGCAGCCCTATTGGCAGTGTTGTCGAACTAATGGGTACCCTTATTGCAGGGGTTATCGGTGGGTAGATGAGATGGCGGGAGGATCCACAGTGTGTAATATAATCCTACGCATCGCATCTGTTCACAAGTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

13.23

Weight (kDa)

6.97

Isoelectric Point (pI)

59.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 246
AccB1I GGYRCC 1 cut(s) 246
AciI CCGC 2 cut(s) 87, 287
AclWI GGATC 2 cut(s) 288, 301
AcuI CTGAAG 1 cut(s) 14
AdeI CACNNNGTG 1 cut(s) 303
AfaI GTAC 1 cut(s) 248
AfiI CCNNNNNNNGG 1 cut(s) 31
AgsI TTSAA 1 cut(s) 113
Alw21I GWGCWC 1 cut(s) 198
Alw44I GTGCAC 1 cut(s) 194
AlwI GGATC 2 cut(s) 288, 301
AoxI GGCC 1 cut(s) 84
ApaLI GTGCAC 1 cut(s) 194
ApeKI GCWGC 1 cut(s) 214
Asp718I GGTACC 1 cut(s) 246
AspS9I GGNCC 2 cut(s) 9, 77
AvaII GGWCC 2 cut(s) 9, 77
AxyI CCTNAGG 1 cut(s) 81
BaeGI GKGCMC 1 cut(s) 198
BaeI ACNNNNGTAYC 2 cut(s) 160, 193
BamHI GGATCC 1 cut(s) 293
BanI GGYRCC 1 cut(s) 246
BauI CACGAG 1 cut(s) 102
Bbv12I GWGCWC 1 cut(s) 198
BbvI GCAGC 1 cut(s) 226
BccI CCATC 3 cut(s) 60, 106, 277
BcgI CGANNNNNNTGC 2 cut(s) 215, 249
BglI GCCNNNNNGGC 1 cut(s) 223
BisI GCNGC 2 cut(s) 87, 215
BlsI GCNGC 2 cut(s) 88, 216
Bme18I GGWCC 2 cut(s) 9, 77
BmgT120I GGNCC 2 cut(s) 9, 77
BmiI GGNNCC 3 cut(s) 78, 248, 295
BmsI GCATC 3 cut(s) 140, 330, 335
Bsc4I CCNNNNNNNGG 1 cut(s) 31
Bse21I CCTNAGG 1 cut(s) 81
BseLI CCNNNNNNNGG 1 cut(s) 31
BseSI GKGCMC 1 cut(s) 198
BseXI GCAGC 1 cut(s) 226
BshFI GGCC 1 cut(s) 86
BshNI GGYRCC 1 cut(s) 246
BsiHKAI GWGCWC 1 cut(s) 198
BslFI GGGAC 1 cut(s) 90
BslI CCNNNNNNNGG 1 cut(s) 31
BsmFI GGGAC 1 cut(s) 90
BsmI GAATGC 1 cut(s) 98
BsnI GGCC 1 cut(s) 86
Bsp1286I GDGCHC 1 cut(s) 198
Bsp143I GATC 1 cut(s) 293
BspACI CCGC 2 cut(s) 87, 287
BspANI GGCC 1 cut(s) 86
BspLI GGNNCC 3 cut(s) 78, 248, 295
BspPI GGATC 2 cut(s) 288, 301
BspT107I GGYRCC 1 cut(s) 246
BssMI GATC 1 cut(s) 293
BssSI CACGAG 1 cut(s) 102
Bst2BI CACGAG 1 cut(s) 102
Bst4CI ACNGT 1 cut(s) 301
Bst6I CTCTTC 1 cut(s) 33
BstDEI CTNAG 1 cut(s) 81
BstKTI GATC 1 cut(s) 296
BstMBI GATC 1 cut(s) 293
BstMWI GCNNNNNNNGC 1 cut(s) 223
BstSLI GKGCMC 1 cut(s) 198
BstV1I GCAGC 1 cut(s) 226
BstX2I RGATCY 1 cut(s) 293
BstYI RGATCY 1 cut(s) 293
Bsu36I CCTNAGG 1 cut(s) 81
BsuRI GGCC 1 cut(s) 86
BtgZI GCGATG 1 cut(s) 307
BtsI GCAGTG 1 cut(s) 233
BtsIMutI CAGTG 2 cut(s) 233, 306
Cfr13I GGNCC 2 cut(s) 9, 77
Csp6I GTAC 1 cut(s) 247
CviAII CATG 2 cut(s) 172, 181
CviJI RGCY 3 cut(s) 64, 86, 217
CviKI_1 RGCY 3 cut(s) 64, 86, 217
CviQI GTAC 1 cut(s) 247
DdeI CTNAG 1 cut(s) 81
DpnI GATC 1 cut(s) 295
DpnII GATC 1 cut(s) 293
DraIII CACNNNGTG 1 cut(s) 303
Eam1104I CTCTTC 1 cut(s) 33
EarI CTCTTC 1 cut(s) 33
Eco47I GGWCC 2 cut(s) 9, 77
Eco57I CTGAAG 1 cut(s) 14
Eco81I CCTNAGG 1 cut(s) 81
EcoO109I RGGNCCY 1 cut(s) 77
FaeI CATG 2 cut(s) 175, 184
FaiI YATR 5 cut(s) 69, 160, 173, 182, 311
FaqI GGGAC 1 cut(s) 90
FatI CATG 2 cut(s) 171, 180
FauI CCCGC 1 cut(s) 280
Fnu4HI GCNGC 2 cut(s) 87, 215
Fsp4HI GCNGC 2 cut(s) 87, 215
GluI GCNGC 2 cut(s) 87, 215
HaeIII GGCC 1 cut(s) 86
Hin1II CATG 2 cut(s) 175, 184
HinfI GANTC 2 cut(s) 58, 142
Hpy166II GTNNAC 3 cut(s) 9, 196, 334
Hpy188I TCNGA 2 cut(s) 57, 147
Hpy188III TCNNGA 1 cut(s) 32
Hpy8I GTNNAC 3 cut(s) 9, 196, 334
Hpy99I CGWCG 1 cut(s) 17
HpyCH4III ACNGT 1 cut(s) 301
HpyCH4V TGCA 2 cut(s) 196, 258
HpyF10VI GCNNNNNNNGC 1 cut(s) 223
HpyF3I CTNAG 1 cut(s) 81
Hsp92II CATG 2 cut(s) 175, 184
KpnI GGTACC 1 cut(s) 250
Kzo9I GATC 1 cut(s) 293
LmnI GCTCC 1 cut(s) 211
LpnPI CCDG 3 cut(s) 17, 147, 244
Lsp1109I GCAGC 1 cut(s) 226
LweI GCATC 3 cut(s) 140, 330, 335
MaeIII GTNAC 1 cut(s) 41
MalI GATC 1 cut(s) 295
MboI GATC 1 cut(s) 293
MboII GAAGA 1 cut(s) 20
MflI RGATCY 1 cut(s) 293
MhlI GDGCHC 1 cut(s) 198
MlyI GAGTC 1 cut(s) 151
MnlI CCTC 6 cut(s) 36, 66, 129, 157, 201, 284
Mva1269I GAATGC 1 cut(s) 98
MwoI GCNNNNNNNGC 1 cut(s) 223
NdeII GATC 1 cut(s) 293
NlaIII CATG 2 cut(s) 175, 184
NlaIV GGNNCC 3 cut(s) 78, 248, 295
NmuCI GTSAC 1 cut(s) 41
PctI GAATGC 1 cut(s) 98
PfeI GAWTC 1 cut(s) 58
PkrI GCNGC 2 cut(s) 88, 216
PleI GAGTC 1 cut(s) 150
PpsI GAGTC 1 cut(s) 150
PpuMI RGGWCCY 1 cut(s) 77
Psp5II RGGWCCY 1 cut(s) 77
PspN4I GGNNCC 3 cut(s) 78, 248, 295
PspPI GGNCC 2 cut(s) 9, 77
PspPPI RGGWCCY 1 cut(s) 77
PsuI RGATCY 1 cut(s) 293
RsaI GTAC 1 cut(s) 248
RsaNI GTAC 1 cut(s) 247
SatI GCNGC 2 cut(s) 87, 215
Sau3AI GATC 1 cut(s) 293
Sau96I GGNCC 2 cut(s) 9, 77
SchI GAGTC 1 cut(s) 151
SduI GDGCHC 1 cut(s) 198
SetI ASST 1 cut(s) 82
SfaNI GCATC 3 cut(s) 140, 330, 335
SinI GGWCC 2 cut(s) 9, 77
SsiI CCGC 2 cut(s) 87, 287
TaaI ACNGT 1 cut(s) 301
TaqI TCGA 1 cut(s) 235
TaqII GACCGA 1 cut(s) 26
TauI GCSGC 1 cut(s) 89
TfiI GAWTC 1 cut(s) 58
TscAI CASTG 2 cut(s) 233, 306
TseFI GTSAC 1 cut(s) 41
TseI GCWGC 1 cut(s) 214
Tsp45I GTSAC 1 cut(s) 41
TspRI CASTG 2 cut(s) 233, 306
VneI GTGCAC 1 cut(s) 194
VpaK11BI GGWCC 2 cut(s) 9, 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.