Rroxscaffold_6G00390820

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0004259
Physical Location & Seq
Reverse (-)
6582798 .. 6609896
27099 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00390820.1

Sequence Viewer

Length: 1164 bp
ATGGAGTATGCTTTCTTTGATCAATATGGAACCATCCTTGATAGTAATCATGAAACCGATTACTTTCAAGTGGAAGACCTTTTTGTTGATGACAACGACGATCCTGGGTTGGATGGTGATGATGCGGTGACCTCGATGCTGAAACGGATGCCGAATCACTGCGATTTGCTTGTGGGTCGCCACACTTTGGTTTGTCAAGGGCAGATTATTAATAGTTGGGCGGTTCCTAACTCTGTTATAGCTTACGGGGAGGTGTCGAAGGAGTTGATGCCTCGGCGAAAAGCTTCGCGAACAGAGCTGATGGCTTCTTCGTCGGAACCGGGGCTGAAGACGTTGCTTGAGAGGGGAAGCGCCGAAGTCAACGAAAGGAGATTCAGGCGAGCTCTTGCTTTGGGTGAACCCGGCCGTGGTTCTGTTCTGCCTTACACACTGTTGAAGACAACTCTAGAGAAGCCAAAGCCAAAGCCAAGACTCATCTACATTCTTATGCATCTATACTTTCATATGTTGATCGTCAAATGGAATTTTCTGCTATCTCGCATTCCTCACTTTCCCAAAGCGGGTGTCTTAGAAGATCACAGCCACATGATTCAAAATGATAAATCGGTTTTCTCTGTAAATGGTTTCCAACACCAATATTTCCAAGAATCACCAAAAACTTCCACTAAAATTTTCCAAATTCAGCTTCGATCTGCTGACCATATCAATCAACATTACAACACCAAAATATCAAATACAGGCTTTATTTATATCTGTAGTATCGATCACAAGGTAAACAAGGGAAATTGGGCTACTTTAGACTTAGAAATTCATGTTCCCAATGAATCTTTCGACTTCAATAGGTACCCTTATTGCAGGGGTTATCGGTGGGTAGATGAGATGGTGGAAGGATCCATAGTGTGTAATATAAGCCCTAAGCATCGCATCTGTTCACAAGTCCTAATGACTGAAACCTATTACTTGATACAAGAGTACCGGGCTGTCCGACGGTGGTATGTCTCTCGAAATGTAGGGGGAGAGTTGGAAAACAAAATGCGTAGGCATAACTCACGATGTATGGACCTAATTGCGAGGTATGCCGCCGCCCGATGTGTTCCTACATATCACAATCTGTTGACAATTTTGGCAGGCCTTATTGGTACCGCTGCTATGGGTTCTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

387

Amino Acids

44.66

Weight (kDa)

8.32

Isoelectric Point (pI)

42.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 843, 1139
AccB1I GGYRCC 2 cut(s) 843, 1139
AccB7I CCANNNNNTGG 1 cut(s) 187
AccII CGCG 1 cut(s) 289
AciI CCGC 6 cut(s) 125, 221, 560, 1080, 1083, 1143
AclWI GGATC 3 cut(s) 95, 885, 898
AcoI YGGCCR 1 cut(s) 403
AcsI RAATTY 4 cut(s) 523, 669, 678, 807
AcuI CTGAAG 1 cut(s) 347
AfaI GTAC 3 cut(s) 845, 974, 1141
AfiI CCNNNNNNNGG 3 cut(s) 187, 407, 560
AgsI TTSAA 4 cut(s) 68, 436, 593, 838
AjnI CCWGG 1 cut(s) 103
AjuI GAANNNNNNNTTGG 4 cut(s) 669, 701, 812, 844
AluBI AGCT 5 cut(s) 242, 284, 298, 383, 685
AluI AGCT 5 cut(s) 242, 284, 298, 383, 685
Alw21I GWGCWC 1 cut(s) 385
Alw26I GTCTC 1 cut(s) 1003
AlwI GGATC 3 cut(s) 95, 885, 898
AoxI GGCC 2 cut(s) 403, 1129
ApeKI GCWGC 1 cut(s) 1145
ApoI RAATTY 4 cut(s) 523, 669, 678, 807
ArsI GACNNNNNNTTYG 2 cut(s) 549, 581
AseI ATTAAT 1 cut(s) 210
Asp700I GAANNNNTTC 1 cut(s) 283
Asp718I GGTACC 2 cut(s) 843, 1139
AspLEI GCGC 1 cut(s) 353
AspS9I GGNCC 1 cut(s) 1060
AsuC2I CCSGG 3 cut(s) 321, 402, 977
AsuHPI GGTGA 4 cut(s) 128, 139, 407, 642
AvaII GGWCC 1 cut(s) 1060
BaeI ACNNNNGTAYC 4 cut(s) 956, 956, 989, 989
BamHI GGATCC 1 cut(s) 890
BanI GGYRCC 2 cut(s) 843, 1139
BanII GRGCYC 1 cut(s) 385
BbsI GAAGAC 3 cut(s) 81, 335, 443
Bbv12I GWGCWC 1 cut(s) 385
BbvI GCAGC 1 cut(s) 1132
BccI CCATC 4 cut(s) 41, 107, 295, 874
BceAI ACGGC 1 cut(s) 390
BciT130I CCWGG 1 cut(s) 105
BclI TGATCA 1 cut(s) 19
BcnI CCSGG 3 cut(s) 321, 402, 977
BcoDI GTCTC 1 cut(s) 1003
BfaI CTAG 1 cut(s) 446
BfmI CTRYAG 1 cut(s) 754
BfoI RGCGCY 1 cut(s) 354
BisI GCNGC 3 cut(s) 1080, 1083, 1146
BlsI GCNGC 3 cut(s) 1081, 1084, 1147
Bme1390I CCNGG 4 cut(s) 105, 321, 402, 977
Bme18I GGWCC 1 cut(s) 1060
BmgT120I GGNCC 1 cut(s) 1060
BmiI GGNNCC 6 cut(s) 31, 225, 318, 845, 892, 1141
BmrFI CCNGG 4 cut(s) 105, 321, 402, 977
BmsI GCATC 7 cut(s) 112, 126, 138, 258, 499, 928, 933
BpiI GAAGAC 3 cut(s) 81, 335, 443
Bpu10I CCTNAGC 1 cut(s) 915
BpuEI CTTGAG 1 cut(s) 359
BpuMI CCSGG 3 cut(s) 321, 402, 977
Bsa29I ATCGAT 1 cut(s) 762
BsaBI GATNNNNATC 1 cut(s) 45
BsaJI CCNNGG 4 cut(s) 104, 272, 320, 406
Bsc4I CCNNNNNNNGG 3 cut(s) 187, 407, 560
Bse8I GATNNNNATC 1 cut(s) 45
BseBI CCWGG 1 cut(s) 105
BseCI ATCGAT 1 cut(s) 762
BseDI CCNNGG 4 cut(s) 104, 272, 320, 406
BseGI GGATG 3 cut(s) 33, 118, 153
BseJI GATNNNNATC 1 cut(s) 45
BseLI CCNNNNNNNGG 3 cut(s) 187, 407, 560
BseX3I CGGCCG 1 cut(s) 403
BseXI GCAGC 1 cut(s) 1132
Bsh1236I CGCG 1 cut(s) 289
Bsh1285I CGRYCG 1 cut(s) 406
BshFI GGCC 2 cut(s) 405, 1131
BshNI GGYRCC 2 cut(s) 843, 1139
BshVI ATCGAT 1 cut(s) 762
BsiEI CGRYCG 1 cut(s) 406
BsiHKAI GWGCWC 1 cut(s) 385
BsiSI CCGG 3 cut(s) 320, 402, 976
BslI CCNNNNNNNGG 3 cut(s) 187, 407, 560
BsmAI GTCTC 1 cut(s) 1003
BsmI GAATGC 1 cut(s) 540
BsnI GGCC 2 cut(s) 405, 1131
Bsp1286I GDGCHC 1 cut(s) 385
Bsp143I GATC 7 cut(s) 19, 100, 510, 574, 689, 763, 890
Bsp68I TCGCGA 1 cut(s) 289
BspACI CCGC 6 cut(s) 125, 221, 560, 1080, 1083, 1143
BspANI GGCC 2 cut(s) 405, 1131
BspDI ATCGAT 1 cut(s) 762
BspFNI CGCG 1 cut(s) 289
BspHI TCATGA 1 cut(s) 49
BspLI GGNNCC 6 cut(s) 31, 225, 318, 845, 892, 1141
BspPI GGATC 3 cut(s) 95, 885, 898
BspT107I GGYRCC 2 cut(s) 843, 1139
BssECI CCNNGG 4 cut(s) 104, 272, 320, 406
BssMI GATC 7 cut(s) 19, 100, 510, 574, 689, 763, 890
Bst2UI CCWGG 1 cut(s) 105
Bst4CI ACNGT 2 cut(s) 432, 990
BstC8I GCNNGC 2 cut(s) 381, 1129
BstDEI CTNAG 3 cut(s) 568, 802, 915
BstDSI CCRYGG 1 cut(s) 406
BstEII GGTNACC 1 cut(s) 127
BstF5I GGATG 3 cut(s) 33, 118, 153
BstFNI CGCG 1 cut(s) 289
BstH2I RGCGCY 1 cut(s) 354
BstHHI GCGC 1 cut(s) 353
BstKTI GATC 7 cut(s) 22, 103, 513, 577, 692, 766, 893
BstMAI GTCTC 1 cut(s) 1003
BstMBI GATC 7 cut(s) 19, 100, 510, 574, 689, 763, 890
BstMCI CGRYCG 1 cut(s) 406
BstMWI GCNNNNNNNGC 2 cut(s) 295, 1076
BstNI CCWGG 1 cut(s) 105
BstPI GGTNACC 1 cut(s) 127
BstSCI CCNGG 4 cut(s) 103, 319, 400, 975
BstSFI CTRYAG 1 cut(s) 754
BstUI CGCG 1 cut(s) 289
BstV1I GCAGC 1 cut(s) 1132
BstV2I GAAGAC 3 cut(s) 81, 335, 443
BstX2I RGATCY 1 cut(s) 890
BstYI RGATCY 1 cut(s) 890
BstZI CGGCCG 1 cut(s) 403
Bsu15I ATCGAT 1 cut(s) 762
BsuRI GGCC 2 cut(s) 405, 1131
BsuTUI ATCGAT 1 cut(s) 762
BtgI CCRYGG 1 cut(s) 406
BtgZI GCGATG 1 cut(s) 905
BtsCI GGATG 3 cut(s) 33, 118, 153
BtsI GCAGTG 1 cut(s) 157
BtsIMutI CAGTG 2 cut(s) 157, 428
BtuMI TCGCGA 1 cut(s) 289
Cac8I GCNNGC 2 cut(s) 381, 1129
CciI TCATGA 1 cut(s) 49
CfoI GCGC 1 cut(s) 353
Cfr13I GGNCC 1 cut(s) 1060
ClaI ATCGAT 1 cut(s) 762
Csp6I GTAC 3 cut(s) 844, 973, 1140
CviAII CATG 3 cut(s) 50, 586, 812
CviQI GTAC 3 cut(s) 844, 973, 1140
DdeI CTNAG 3 cut(s) 568, 802, 915
DpnI GATC 7 cut(s) 21, 102, 512, 576, 691, 765, 892
DpnII GATC 7 cut(s) 19, 100, 510, 574, 689, 763, 890
EaeI YGGCCR 1 cut(s) 403
EagI CGGCCG 1 cut(s) 403
Ecl136II GAGCTC 1 cut(s) 383
EclXI CGGCCG 1 cut(s) 403
Eco147I AGGCCT 1 cut(s) 1131
Eco24I GRGCYC 1 cut(s) 385
Eco47I GGWCC 1 cut(s) 1060
Eco52I CGGCCG 1 cut(s) 403
Eco53kI GAGCTC 1 cut(s) 383
Eco57I CTGAAG 1 cut(s) 347
Eco91I GGTNACC 1 cut(s) 127
EcoICRI GAGCTC 1 cut(s) 383
EcoO65I GGTNACC 1 cut(s) 127
EcoRII CCWGG 1 cut(s) 103
EcoT22I ATGCAT 1 cut(s) 492
EcoT38I GRGCYC 1 cut(s) 385
FaeI CATG 3 cut(s) 53, 589, 815
FatI CATG 3 cut(s) 49, 585, 811
FauI CCCGC 1 cut(s) 553
FauNDI CATATG 1 cut(s) 504
FbaI TGATCA 1 cut(s) 19
Fnu4HI GCNGC 3 cut(s) 1080, 1083, 1146
FokI GGATG 3 cut(s) 20, 125, 160
FriOI GRGCYC 1 cut(s) 385
Fsp4HI GCNGC 3 cut(s) 1080, 1083, 1146
FspBI CTAG 1 cut(s) 446
GlaI GCGC 1 cut(s) 352
GluI GCNGC 3 cut(s) 1080, 1083, 1146
HaeII RGCGCY 1 cut(s) 354
HaeIII GGCC 2 cut(s) 405, 1131
HapII CCGG 3 cut(s) 320, 402, 976
HhaI GCGC 1 cut(s) 353
Hin1II CATG 3 cut(s) 53, 589, 815
Hin6I GCGC 1 cut(s) 351
HinP1I GCGC 1 cut(s) 351
HincII GTYRAC 2 cut(s) 361, 1116
HindII GTYRAC 2 cut(s) 361, 1116
HindIII AAGCTT 1 cut(s) 282
HinfI GANTC 6 cut(s) 154, 372, 471, 589, 647, 824
HpaII CCGG 3 cut(s) 320, 402, 976
HphI GGTGA 4 cut(s) 128, 139, 407, 642
Hpy166II GTNNAC 5 cut(s) 361, 398, 775, 932, 1116
Hpy188I TCNGA 2 cut(s) 316, 986
Hpy188III TCNNGA 5 cut(s) 50, 288, 446, 1002, 1050
Hpy8I GTNNAC 5 cut(s) 361, 398, 775, 932, 1116
Hpy99I CGWCG 3 cut(s) 101, 316, 990
HpyAV CCTTC 2 cut(s) 253, 881
HpyCH4III ACNGT 2 cut(s) 432, 990
HpyCH4IV ACGT 1 cut(s) 332
HpyCH4V TGCA 2 cut(s) 490, 855
HpyF10VI GCNNNNNNNGC 2 cut(s) 295, 1076
HpyF3I CTNAG 3 cut(s) 568, 802, 915
HpySE526I ACGT 1 cut(s) 332
Hsp92II CATG 3 cut(s) 53, 589, 815
HspAI GCGC 1 cut(s) 351
KpnI GGTACC 2 cut(s) 847, 1143
Ksp22I TGATCA 1 cut(s) 19
Kzo9I GATC 7 cut(s) 19, 100, 510, 574, 689, 763, 890
LpnPI CCDG 9 cut(s) 90, 117, 333, 361, 415, 723, 841, 989, 1113
Lsp1109I GCAGC 1 cut(s) 1132
LweI GCATC 7 cut(s) 112, 126, 138, 258, 499, 928, 933
MaeI CTAG 1 cut(s) 446
MaeII ACGT 1 cut(s) 332
MaeIII GTNAC 1 cut(s) 127
MalI GATC 7 cut(s) 21, 102, 512, 576, 691, 765, 892
MboI GATC 7 cut(s) 19, 100, 510, 574, 689, 763, 890
MboII GAAGA 5 cut(s) 86, 300, 340, 448, 584
MflI RGATCY 1 cut(s) 890
MhlI GDGCHC 1 cut(s) 385
MluCI AATT 7 cut(s) 523, 669, 678, 784, 807, 1065, 1119
MlyI GAGTC 1 cut(s) 465
MmeI TCCRAC 5 cut(s) 90, 294, 652, 1002, 1009
MnlI CCTC 6 cut(s) 142, 244, 282, 336, 555, 1065
Mph1103I ATGCAT 1 cut(s) 492
MroXI GAANNNNTTC 1 cut(s) 283
MseI TTAA 1 cut(s) 210
MslI CAYNNNNRTG 1 cut(s) 485
MspA1I CMGCKG 1 cut(s) 1145
MspI CCGG 3 cut(s) 320, 402, 976
MspR9I CCNGG 4 cut(s) 105, 321, 402, 977
Mva1269I GAATGC 1 cut(s) 540
MvaI CCWGG 1 cut(s) 105
MvnI CGCG 1 cut(s) 289
MwoI GCNNNNNNNGC 2 cut(s) 295, 1076
NciI CCSGG 3 cut(s) 321, 402, 977
NdeI CATATG 1 cut(s) 504
NdeII GATC 7 cut(s) 19, 100, 510, 574, 689, 763, 890
NlaIII CATG 3 cut(s) 53, 589, 815
NlaIV GGNNCC 6 cut(s) 31, 225, 318, 845, 892, 1141
NmeAIII GCCGAG 1 cut(s) 253
NmuCI GTSAC 1 cut(s) 127
NruI TCGCGA 1 cut(s) 289
NsiI ATGCAT 1 cut(s) 492
PagI TCATGA 1 cut(s) 49
PceI AGGCCT 1 cut(s) 1131
PctI GAATGC 1 cut(s) 540
PdmI GAANNNNTTC 1 cut(s) 283
PfeI GAWTC 5 cut(s) 154, 372, 589, 647, 824
PflMI CCANNNNNTGG 1 cut(s) 187
PkrI GCNGC 3 cut(s) 1081, 1084, 1147
PleI GAGTC 1 cut(s) 465
PpsI GAGTC 1 cut(s) 465
PshBI ATTAAT 1 cut(s) 210
Psp124BI GAGCTC 1 cut(s) 385
Psp6I CCWGG 1 cut(s) 103
PspEI GGTNACC 1 cut(s) 127
PspGI CCWGG 1 cut(s) 103
PspN4I GGNNCC 6 cut(s) 31, 225, 318, 845, 892, 1141
PspPI GGNCC 1 cut(s) 1060
PsuI RGATCY 1 cut(s) 890
RruI TCGCGA 1 cut(s) 289
RsaI GTAC 3 cut(s) 845, 974, 1141
RsaNI GTAC 3 cut(s) 844, 973, 1140
RseI CAYNNNNRTG 1 cut(s) 485
SacI GAGCTC 1 cut(s) 385
SaqAI TTAA 1 cut(s) 210
SatI GCNGC 3 cut(s) 1080, 1083, 1146
Sau3AI GATC 7 cut(s) 19, 100, 510, 574, 689, 763, 890
Sau96I GGNCC 1 cut(s) 1060
SchI GAGTC 1 cut(s) 465
ScrFI CCNGG 4 cut(s) 105, 321, 402, 977
SduI GDGCHC 1 cut(s) 385
SfaNI GCATC 7 cut(s) 112, 126, 138, 258, 499, 928, 933
SfcI CTRYAG 1 cut(s) 754
SinI GGWCC 1 cut(s) 1060
SmiMI CAYNNNNRTG 1 cut(s) 485
SmlI CTYRAG 1 cut(s) 338
SmoI CTYRAG 1 cut(s) 338
Sse9I AATT 7 cut(s) 523, 669, 678, 784, 807, 1065, 1119
SseBI AGGCCT 1 cut(s) 1131
SsiI CCGC 6 cut(s) 125, 221, 560, 1080, 1083, 1143
SspI AATATT 1 cut(s) 638
SspMI CTAG 1 cut(s) 446
SstI GAGCTC 1 cut(s) 385
StuI AGGCCT 1 cut(s) 1131
StyD4I CCNGG 4 cut(s) 103, 319, 400, 975
TaaI ACNGT 2 cut(s) 432, 990
TaiI ACGT 1 cut(s) 335
TaqI TCGA 6 cut(s) 134, 257, 688, 762, 831, 1003
TasI AATT 7 cut(s) 523, 669, 678, 784, 807, 1065, 1119
TauI GCSGC 2 cut(s) 1082, 1085
TfiI GAWTC 5 cut(s) 154, 372, 589, 647, 824
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TscAI CASTG 2 cut(s) 164, 435
TseFI GTSAC 1 cut(s) 127
TseI GCWGC 1 cut(s) 1145
Tsp45I GTSAC 1 cut(s) 127
TspDTI ATGAA 4 cut(s) 66, 491, 800, 837
TspGWI ACGGA 1 cut(s) 160
TspRI CASTG 2 cut(s) 164, 435
Van91I CCANNNNNTGG 1 cut(s) 187
VpaK11BI GGWCC 1 cut(s) 1060
VspI ATTAAT 1 cut(s) 210
XapI RAATTY 4 cut(s) 523, 669, 678, 807
XbaI TCTAGA 1 cut(s) 445
XmnI GAANNNNTTC 1 cut(s) 283
XspI CTAG 1 cut(s) 446
Zsp2I ATGCAT 1 cut(s) 492
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.