Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0004259

Physical Location & Seq

Genomic Coordinates Reverse (-)

39176139 .. 39176751

Gene Structure 613 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG346600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGAACATGACCAATCCCCTTCCGGTAGGCTACTATGGAACCCCCATGCAGGATGAACCGCCTGAGGTCCCTCCGGCTCCTCCGAACTCACCGACTAGTATGGTGGAAGTCCATGTTCATCCTTTGTTTCCTCTTCATGCAGACGATTCAACCAATCCATTTTGTAACTGCAACGTCGATAAAGAACTGGAGACTGTTGCCTATGATGGATATTTTGACAATCTTGTCTCCCCAAGTTCACATATGGAGTATGTTTTCTTTGATCAATATGGCACCTTCCTTGATAGTAATTATGAAACTGATTCCTTTCAAGTGGAAGACTTTTTTGTTGATGATGACGACGATCTTGGGTTGGATGATGATGATGTAATGACCTCTGATGCTGAAACGAATGCCAGTACTCTTGAGTTTCATGATGTTGCTGATGAAGATGTGCCAATCGGTGATGCTATGGATGATACCCCTCCTGCTACTGGTGATTCAGATGGAAACCGCATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

166

Amino Acids

18.37

Weight (kDa)

4.05

Isoelectric Point (pI)

32.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004259)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000008814 RLG00000029112
rosa_roxburghii	Rroxscaffold_5G00350650 Rroxscaffold_6G00390820
rosa_rugosa	Rorug02G0564700 Rorug03G0343300 Rorug03G0343400 Rorug05G0106300 Rorug06G0055000 Rorug07G0182200
rosa_samantha	Rh1AG004700 Rh1CG049300 Rh1DG053500 Rh1DG177300 Rh2AG353900 Rh2AG642600 Rh3BG341600 Rh3BG341700 Rh3DG305000 Rh3DG341100 Rh4BG182500 Rh4BG182600 Rh5AG364400 Rh5AG365000 Rh5DG239800 Rh6CG205400 Rh6CG419600 Rh6DG498600 Rh7AG329200 Rh7BG319100 Rh7BG319200 Rh7CG346600 Rh7CG370700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	224
AccB1I	GGYRCC	1 cut(s)	272
AciI	CCGC	2 cut(s)	59, 493
AfaI	GTAC	1 cut(s)	400
AfiI	CCNNNNNNNGG	2 cut(s)	49, 473
AgsI	TTSAA	2 cut(s)	150, 311
AhlI	ACTAGT	1 cut(s)	95
Alw26I	GTCTC	2 cut(s)	185, 232
AspS9I	GGNCC	1 cut(s)	67
AsuHPI	GGTGA	3 cut(s)	81, 455, 488
AvaII	GGWCC	1 cut(s)	67
AxyI	CCTNAGG	1 cut(s)	63
BanI	GGYRCC	1 cut(s)	272
BbsI	GAAGAC	1 cut(s)	324
BccI	CCATC	2 cut(s)	200, 479
BclI	TGATCA	1 cut(s)	262
BcoDI	GTCTC	2 cut(s)	185, 232
BcuI	ACTAGT	1 cut(s)	95
BfaI	CTAG	1 cut(s)	96
BmcAI	AGTACT	1 cut(s)	400
Bme18I	GGWCC	1 cut(s)	67
BmgT120I	GGNCC	1 cut(s)	67
BmiI	GGNNCC	4 cut(s)	40, 69, 78, 274
BmsI	GCATC	2 cut(s)	370, 436
BpiI	GAAGAC	1 cut(s)	324
BpmI	CTGGAG	1 cut(s)	209
BpuEI	CTTGAG	1 cut(s)	425
BsaWI	WCCGGW	1 cut(s)	22
Bsc4I	CCNNNNNNNGG	2 cut(s)	49, 473
Bse1I	ACTGG	3 cut(s)	192, 396, 478
Bse21I	CCTNAGG	1 cut(s)	63
BseGI	GGATG	4 cut(s)	58, 118, 361, 460
BseLI	CCNNNNNNNGG	2 cut(s)	49, 473
BseMII	CTCAG	1 cut(s)	54
BseNI	ACTGG	3 cut(s)	192, 396, 478
BseRI	GAGGAG	1 cut(s)	69
BshNI	GGYRCC	1 cut(s)	272
BsiSI	CCGG	2 cut(s)	23, 74
BslFI	GGGAC	1 cut(s)	53
BslI	CCNNNNNNNGG	2 cut(s)	49, 473
BsmAI	GTCTC	2 cut(s)	185, 232
BsmFI	GGGAC	1 cut(s)	53
BsmI	GAATGC	1 cut(s)	397
Bsp143I	GATC	2 cut(s)	262, 343
BspACI	CCGC	2 cut(s)	59, 493
BspCNI	CTCAG	1 cut(s)	55
BspHI	TCATGA	1 cut(s)	412
BspLI	GGNNCC	4 cut(s)	40, 69, 78, 274
BspT107I	GGYRCC	1 cut(s)	272
BsrI	ACTGG	3 cut(s)	192, 396, 478
BssMI	GATC	2 cut(s)	262, 343
Bst4CI	ACNGT	1 cut(s)	196
Bst6I	CTCTTC	1 cut(s)	138
BstDEI	CTNAG	1 cut(s)	63
BstF5I	GGATG	4 cut(s)	58, 118, 361, 460
BstKTI	GATC	2 cut(s)	265, 346
BstMAI	GTCTC	2 cut(s)	185, 232
BstMBI	GATC	2 cut(s)	262, 343
BstV2I	GAAGAC	1 cut(s)	324
Bsu36I	CCTNAGG	1 cut(s)	63
BtsCI	GGATG	4 cut(s)	58, 118, 361, 460
CciI	TCATGA	1 cut(s)	412
Cfr13I	GGNCC	1 cut(s)	67
Csp6I	GTAC	1 cut(s)	399
CviAII	CATG	5 cut(s)	7, 46, 113, 137, 413
CviJI	RGCY	2 cut(s)	30, 77
CviKI_1	RGCY	2 cut(s)	30, 77
CviQI	GTAC	1 cut(s)	399
DdeI	CTNAG	1 cut(s)	63
DpnI	GATC	2 cut(s)	264, 345
DpnII	GATC	2 cut(s)	262, 343
DrdI	GACNNNNNNGTC	1 cut(s)	224
DseDI	GACNNNNNNGTC	1 cut(s)	224
Eam1104I	CTCTTC	1 cut(s)	138
EarI	CTCTTC	1 cut(s)	138
Eco47I	GGWCC	1 cut(s)	67
Eco81I	CCTNAGG	1 cut(s)	63
EcoO109I	RGGNCCY	1 cut(s)	67
FaeI	CATG	5 cut(s)	10, 49, 116, 140, 416
FaqI	GGGAC	1 cut(s)	53
FatI	CATG	5 cut(s)	6, 45, 112, 136, 412
FauNDI	CATATG	2 cut(s)	243, 497
FbaI	TGATCA	1 cut(s)	262
FokI	GGATG	4 cut(s)	65, 105, 368, 467
FspBI	CTAG	1 cut(s)	96
GsuI	CTGGAG	1 cut(s)	209
HapII	CCGG	2 cut(s)	23, 74
Hin1II	CATG	5 cut(s)	10, 49, 116, 140, 416
HinfI	GANTC	3 cut(s)	146, 302, 479
HpaII	CCGG	2 cut(s)	23, 74
HphI	GGTGA	3 cut(s)	81, 455, 488
Hpy166II	GTNNAC	1 cut(s)	239
Hpy188I	TCNGA	3 cut(s)	84, 379, 484
Hpy188III	TCNNGA	2 cut(s)	404, 413
Hpy8I	GTNNAC	1 cut(s)	239
Hpy99I	CGWCG	2 cut(s)	179, 344
HpyAV	CCTTC	2 cut(s)	29, 286
HpyCH4III	ACNGT	1 cut(s)	196
HpyCH4IV	ACGT	1 cut(s)	174
HpyCH4V	TGCA	3 cut(s)	49, 140, 171
HpyF3I	CTNAG	1 cut(s)	63
HpySE526I	ACGT	1 cut(s)	174
Hsp92II	CATG	5 cut(s)	10, 49, 116, 140, 416
Ksp22I	TGATCA	1 cut(s)	262
Kzo9I	GATC	2 cut(s)	262, 343
LmnI	GCTCC	1 cut(s)	82
LpnPI	CCDG	8 cut(s)	35, 36, 75, 87, 173, 409, 459, 480
LweI	GCATC	2 cut(s)	370, 436
MaeI	CTAG	1 cut(s)	96
MaeII	ACGT	1 cut(s)	174
MaeIII	GTNAC	1 cut(s)	164
MalI	GATC	2 cut(s)	264, 345
MboI	GATC	2 cut(s)	262, 343
MboII	GAAGA	3 cut(s)	125, 329, 440
MluCI	AATT	1 cut(s)	289
MmeI	TCCRAC	1 cut(s)	333
MnlI	CCTC	6 cut(s)	58, 81, 90, 141, 385, 474
MspI	CCGG	2 cut(s)	23, 74
Mva1269I	GAATGC	1 cut(s)	397
NdeI	CATATG	2 cut(s)	243, 497
NdeII	GATC	2 cut(s)	262, 343
NlaIII	CATG	5 cut(s)	10, 49, 116, 140, 416
NlaIV	GGNNCC	4 cut(s)	40, 69, 78, 274
PagI	TCATGA	1 cut(s)	412
PctI	GAATGC	1 cut(s)	397
PfeI	GAWTC	3 cut(s)	146, 302, 479
PpuMI	RGGWCCY	1 cut(s)	67
Psp5II	RGGWCCY	1 cut(s)	67
PspN4I	GGNNCC	4 cut(s)	40, 69, 78, 274
PspPI	GGNCC	1 cut(s)	67
PspPPI	RGGWCCY	1 cut(s)	67
RsaI	GTAC	1 cut(s)	400
RsaNI	GTAC	1 cut(s)	399
Sau3AI	GATC	2 cut(s)	262, 343
Sau96I	GGNCC	1 cut(s)	67
ScaI	AGTACT	1 cut(s)	400
SetI	ASST	4 cut(s)	69, 177, 278, 377
SfaNI	GCATC	2 cut(s)	370, 436
SinI	GGWCC	1 cut(s)	67
SmlI	CTYRAG	1 cut(s)	404
SmoI	CTYRAG	1 cut(s)	404
SpeI	ACTAGT	1 cut(s)	95
Sse9I	AATT	1 cut(s)	289
SsiI	CCGC	2 cut(s)	59, 493
SspMI	CTAG	1 cut(s)	96
TaaI	ACNGT	1 cut(s)	196
TaiI	ACGT	1 cut(s)	177
TaqI	TCGA	1 cut(s)	177
TasI	AATT	1 cut(s)	289
TatI	WGTACW	1 cut(s)	398
TfiI	GAWTC	3 cut(s)	146, 302, 479
TspDTI	ATGAA	7 cut(s)	17, 69, 107, 125, 309, 401, 441
VpaK11BI	GGWCC	1 cut(s)	67
XspI	CTAG	1 cut(s)	96
ZrmI	AGTACT	1 cut(s)	400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.