Rorug07G0182200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0004259
Physical Location & Seq
Reverse (-)
15216614 .. 15217161
548 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0182200.1

Sequence Viewer

Length: 447 bp
ATGGCCTCTTCCCAGCTTTTCATTATCCTGGCCATTCTAGCAATCGTTGCCCCTTCAGTTTTGGCAACAGATTATGTTGTTGGTGATGACAAAGGTTGGACAACTAACTTTGATTACCAAGCTTGGGCTCGGGGAAAGATGTTCGTTGTTGGCGACAACCTTGTTTTTCACTATCCAGAAGGAGTGCACAATGTACTCAAAGTGAACGGCACTGGGTTTCAACAATGTGCAGCTCCTGCCAGCACTGCGCCATTAACAAGTGGTCATGATGTGATAACCCTAGCAACCCCAGGGAGGAAGTGGTACATTTGTGGTGCTCCTAACCATTGTGCTGCTGGGGGACAGAAGCTTGCCATCACTGTAATGCCATCGTCGTTTGCTCCTAGCCCAAGCCCTCTCTCTGCAAAATACGTCGCTTCTAGCCCTAGCCCCACCTCTGGATGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

148

Amino Acids

15.44

Weight (kDa)

7.7

Isoelectric Point (pI)

47.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 33 - 113 1.7e-25 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 30
AcuI CTGAAG 1 cut(s) 39
AfaI GTAC 2 cut(s) 195, 305
AfiI CCNNNNNNNGG 3 cut(s) 124, 294, 437
AgsI TTSAA 1 cut(s) 221
AjnI CCWGG 2 cut(s) 27, 289
AluBI AGCT 4 cut(s) 16, 122, 233, 349
AluI AGCT 4 cut(s) 16, 122, 233, 349
Alw21I GWGCWC 2 cut(s) 189, 319
Alw44I GTGCAC 1 cut(s) 185
AlwNI CAGNNNCTG 1 cut(s) 236
Ama87I CYCGRG 1 cut(s) 129
AoxI GGCC 2 cut(s) 3, 30
ApaLI GTGCAC 1 cut(s) 185
ApeKI GCWGC 2 cut(s) 230, 332
AspLEI GCGC 1 cut(s) 250
AsuHPI GGTGA 1 cut(s) 95
AvaI CYCGRG 1 cut(s) 129
BaeGI GKGCMC 1 cut(s) 189
BaeI ACNNNNGTAYC 2 cut(s) 295, 328
BalI TGGCCA 1 cut(s) 32
BanII GRGCYC 1 cut(s) 130
Bbv12I GWGCWC 2 cut(s) 189, 319
BbvI GCAGC 2 cut(s) 242, 319
BccI CCATC 2 cut(s) 362, 376
BceAI ACGGC 1 cut(s) 223
BciT130I CCWGG 2 cut(s) 29, 291
BfaI CTAG 5 cut(s) 38, 281, 384, 420, 426
BisI GCNGC 2 cut(s) 231, 333
BlsI GCNGC 2 cut(s) 232, 334
Bme1390I CCNGG 2 cut(s) 29, 291
BmeT110I CYCGRG 1 cut(s) 129
BmrFI CCNGG 2 cut(s) 29, 291
BmrI ACTGGG 1 cut(s) 222
BmsI GCATC 1 cut(s) 431
BmuI ACTGGG 1 cut(s) 222
BsaJI CCNNGG 2 cut(s) 289, 290
Bsc4I CCNNNNNNNGG 3 cut(s) 124, 294, 437
Bse1I ACTGG 1 cut(s) 217
BseBI CCWGG 2 cut(s) 29, 291
BseDI CCNNGG 2 cut(s) 289, 290
BseGI GGATG 1 cut(s) 446
BseLI CCNNNNNNNGG 3 cut(s) 124, 294, 437
BseNI ACTGG 1 cut(s) 217
BseSI GKGCMC 1 cut(s) 189
BseXI GCAGC 2 cut(s) 242, 319
BseYI CCCAGC 2 cut(s) 12, 335
BsgI GTGCAG 1 cut(s) 249
BshFI GGCC 2 cut(s) 5, 32
BsiHKAI GWGCWC 2 cut(s) 189, 319
BsiHKCI CYCGRG 1 cut(s) 129
BslFI GGGAC 1 cut(s) 354
BslI CCNNNNNNNGG 3 cut(s) 124, 294, 437
BsmFI GGGAC 1 cut(s) 354
BsnI GGCC 2 cut(s) 5, 32
BsoBI CYCGRG 1 cut(s) 129
Bsp1286I GDGCHC 3 cut(s) 130, 189, 319
BspANI GGCC 2 cut(s) 5, 32
BspHI TCATGA 1 cut(s) 265
BsrI ACTGG 1 cut(s) 217
BssECI CCNNGG 2 cut(s) 289, 290
Bst2UI CCWGG 2 cut(s) 29, 291
Bst4CI ACNGT 1 cut(s) 361
Bst6I CTCTTC 1 cut(s) 13
BstAPI GCANNNNNTGC 2 cut(s) 47, 236
BstC8I GCNNGC 2 cut(s) 241, 351
BstF5I GGATG 1 cut(s) 446
BstHHI GCGC 1 cut(s) 250
BstMWI GCNNNNNNNGC 4 cut(s) 38, 47, 236, 245
BstNI CCWGG 2 cut(s) 29, 291
BstSCI CCNGG 2 cut(s) 27, 289
BstSLI GKGCMC 1 cut(s) 189
BstV1I GCAGC 2 cut(s) 242, 319
BsuRI GGCC 2 cut(s) 5, 32
BtsCI GGATG 1 cut(s) 446
BtsI GCAGTG 1 cut(s) 243
BtsIMutI CAGTG 3 cut(s) 210, 243, 357
Cac8I GCNNGC 2 cut(s) 241, 351
CaiI CAGNNNCTG 1 cut(s) 236
CciI TCATGA 1 cut(s) 265
CfoI GCGC 1 cut(s) 250
Csp6I GTAC 2 cut(s) 194, 304
CviAII CATG 1 cut(s) 266
CviQI GTAC 2 cut(s) 194, 304
EaeI YGGCCR 1 cut(s) 30
Eam1104I CTCTTC 1 cut(s) 13
EarI CTCTTC 1 cut(s) 13
Eco24I GRGCYC 1 cut(s) 130
Eco57I CTGAAG 1 cut(s) 39
Eco88I CYCGRG 1 cut(s) 129
EcoRII CCWGG 2 cut(s) 27, 289
EcoT38I GRGCYC 1 cut(s) 130
FaeI CATG 1 cut(s) 269
FaiI YATR 2 cut(s) 75, 267
FaqI GGGAC 1 cut(s) 354
FatI CATG 1 cut(s) 265
Fnu4HI GCNGC 2 cut(s) 231, 333
FriOI GRGCYC 1 cut(s) 130
Fsp4HI GCNGC 2 cut(s) 231, 333
FspBI CTAG 5 cut(s) 38, 281, 384, 420, 426
GlaI GCGC 1 cut(s) 249
GluI GCNGC 2 cut(s) 231, 333
GsaI CCCAGC 2 cut(s) 16, 339
HaeIII GGCC 2 cut(s) 5, 32
HhaI GCGC 1 cut(s) 250
Hin1II CATG 1 cut(s) 269
Hin6I GCGC 1 cut(s) 248
HinP1I GCGC 1 cut(s) 248
HindIII AAGCTT 2 cut(s) 120, 347
HphI GGTGA 1 cut(s) 95
Hpy166II GTNNAC 2 cut(s) 187, 205
Hpy188III TCNNGA 3 cut(s) 176, 266, 438
Hpy8I GTNNAC 2 cut(s) 187, 205
Hpy99I CGWCG 2 cut(s) 376, 416
HpyAV CCTTC 2 cut(s) 63, 173
HpyCH4III ACNGT 1 cut(s) 361
HpyCH4IV ACGT 1 cut(s) 411
HpyCH4V TGCA 3 cut(s) 187, 230, 404
HpyF10VI GCNNNNNNNGC 4 cut(s) 38, 47, 236, 245
HpySE526I ACGT 1 cut(s) 411
Hsp92II CATG 1 cut(s) 269
HspAI GCGC 1 cut(s) 248
LmnI GCTCC 3 cut(s) 238, 322, 385
Lsp1109I GCAGC 2 cut(s) 242, 319
LweI GCATC 1 cut(s) 431
MaeI CTAG 5 cut(s) 38, 281, 384, 420, 426
MaeII ACGT 1 cut(s) 411
MhlI GDGCHC 3 cut(s) 130, 189, 319
MlsI TGGCCA 1 cut(s) 32
MluNI TGGCCA 1 cut(s) 32
MmeI TCCRAC 1 cut(s) 77
MnlI CCTC 4 cut(s) 16, 288, 405, 445
Mox20I TGGCCA 1 cut(s) 32
MscI TGGCCA 1 cut(s) 32
MseI TTAA 1 cut(s) 254
MslI CAYNNNNRTG 1 cut(s) 362
Msp20I TGGCCA 1 cut(s) 32
MspR9I CCNGG 2 cut(s) 29, 291
MvaI CCWGG 2 cut(s) 29, 291
MwoI GCNNNNNNNGC 4 cut(s) 38, 47, 236, 245
NlaIII CATG 1 cut(s) 269
PagI TCATGA 1 cut(s) 265
PasI CCCWGGG 1 cut(s) 290
PcsI WCGNNNNNNNCGW 1 cut(s) 150
PkrI GCNGC 2 cut(s) 232, 334
Psp6I CCWGG 2 cut(s) 27, 289
PspFI CCCAGC 2 cut(s) 12, 335
PspGI CCWGG 2 cut(s) 27, 289
PstNI CAGNNNCTG 1 cut(s) 236
RsaI GTAC 2 cut(s) 195, 305
RsaNI GTAC 2 cut(s) 194, 304
RseI CAYNNNNRTG 1 cut(s) 362
SaqAI TTAA 1 cut(s) 254
SatI GCNGC 2 cut(s) 231, 333
ScrFI CCNGG 2 cut(s) 29, 291
SduI GDGCHC 3 cut(s) 130, 189, 319
SetI ASST 8 cut(s) 18, 97, 124, 162, 235, 351, 414, 437
SfaNI GCATC 1 cut(s) 431
SmiMI CAYNNNNRTG 1 cut(s) 362
SspMI CTAG 5 cut(s) 38, 281, 384, 420, 426
StyD4I CCNGG 2 cut(s) 27, 289
TaaI ACNGT 1 cut(s) 361
TaiI ACGT 1 cut(s) 414
TatI WGTACW 1 cut(s) 193
Tru1I TTAA 1 cut(s) 254
Tru9I TTAA 1 cut(s) 254
TscAI CASTG 3 cut(s) 217, 250, 364
TseI GCWGC 2 cut(s) 230, 332
TspDTI ATGAA 1 cut(s) 10
TspRI CASTG 3 cut(s) 217, 250, 364
VneI GTGCAC 1 cut(s) 185
XcmI CCANNNNNNNNNTGG 2 cut(s) 297, 332
XspI CTAG 5 cut(s) 38, 281, 384, 420, 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.