Rh7BG319100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0004259
Physical Location & Seq
Reverse (-)
30953794 .. 30954235
442 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG319100.1

Sequence Viewer

Length: 306 bp
ATGGAGTATGCTTTCTTTGATCAATATGACACATTCCTTGATAGTAATTATGAAACTGATTACTTTCAAGTGGAAGATTTTTTTGTTGATGATGACTACGATCCTGGGTTGGATGATGATGATGCGGTGACCTCTGATGCTGAAACGGATGCCAATACTCTTGAGTTTCATGATACTGCTGATGAAGATGTGCCAACCGGTGATGCTATGGATGATACCCCTCCTGCTGCTGGTAATTCAGATGAGTCTATGAATAACTTCATTCATAAGATCAAAAGGATCATTACCACAAGCTTCCTTCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

101

Amino Acids

11.51

Weight (kDa)

4.05

Isoelectric Point (pI)

26.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 125
AclWI GGATC 2 cut(s) 95, 287
AcuI CTGAAG 1 cut(s) 284
AfiI CCNNNNNNNGG 1 cut(s) 230
AgeI ACCGGT 1 cut(s) 197
AgsI TTSAA 1 cut(s) 68
AjnI CCWGG 1 cut(s) 103
AluBI AGCT 1 cut(s) 294
AluI AGCT 1 cut(s) 294
AlwI GGATC 2 cut(s) 95, 287
ApeKI GCWGC 1 cut(s) 227
AsiGI ACCGGT 1 cut(s) 197
Asp700I GAANNNNTTC 1 cut(s) 257
AsuHPI GGTGA 2 cut(s) 139, 212
BbvI GCAGC 1 cut(s) 214
BciT130I CCWGG 1 cut(s) 105
BclI TGATCA 1 cut(s) 19
BisI GCNGC 1 cut(s) 228
BlsI GCNGC 1 cut(s) 229
Bme1390I CCNGG 1 cut(s) 105
BmrFI CCNGG 1 cut(s) 105
BmsI GCATC 4 cut(s) 112, 127, 139, 193
BpuEI CTTGAG 1 cut(s) 182
BsaJI CCNNGG 1 cut(s) 104
BsaWI WCCGGW 1 cut(s) 197
Bsc4I CCNNNNNNNGG 1 cut(s) 230
Bse118I RCCGGY 1 cut(s) 197
BseBI CCWGG 1 cut(s) 105
BseDI CCNNGG 1 cut(s) 104
BseGI GGATG 3 cut(s) 118, 154, 217
BseLI CCNNNNNNNGG 1 cut(s) 230
BseXI GCAGC 1 cut(s) 214
BshTI ACCGGT 1 cut(s) 197
BsiSI CCGG 1 cut(s) 198
BslI CCNNNNNNNGG 1 cut(s) 230
Bsp143I GATC 4 cut(s) 19, 100, 270, 279
BspACI CCGC 1 cut(s) 125
BspHI TCATGA 1 cut(s) 169
BspPI GGATC 2 cut(s) 95, 287
BsrFI RCCGGY 1 cut(s) 197
BssAI RCCGGY 1 cut(s) 197
BssECI CCNNGG 1 cut(s) 104
BssMI GATC 4 cut(s) 19, 100, 270, 279
Bst2UI CCWGG 1 cut(s) 105
BstEII GGTNACC 1 cut(s) 127
BstF5I GGATG 3 cut(s) 118, 154, 217
BstKTI GATC 4 cut(s) 22, 103, 273, 282
BstMBI GATC 4 cut(s) 19, 100, 270, 279
BstNI CCWGG 1 cut(s) 105
BstPI GGTNACC 1 cut(s) 127
BstSCI CCNGG 1 cut(s) 103
BstV1I GCAGC 1 cut(s) 214
BtsCI GGATG 3 cut(s) 118, 154, 217
CciI TCATGA 1 cut(s) 169
Cfr10I RCCGGY 1 cut(s) 197
CspAI ACCGGT 1 cut(s) 197
CviAII CATG 1 cut(s) 170
CviJI RGCY 1 cut(s) 294
CviKI_1 RGCY 1 cut(s) 294
DpnI GATC 4 cut(s) 21, 102, 272, 281
DpnII GATC 4 cut(s) 19, 100, 270, 279
Eco57I CTGAAG 1 cut(s) 284
Eco91I GGTNACC 1 cut(s) 127
EcoO65I GGTNACC 1 cut(s) 127
EcoRII CCWGG 1 cut(s) 103
FaeI CATG 1 cut(s) 173
FaiI YATR 7 cut(s) 9, 27, 51, 171, 209, 251, 267
FatI CATG 1 cut(s) 169
FbaI TGATCA 1 cut(s) 19
Fnu4HI GCNGC 1 cut(s) 228
FokI GGATG 3 cut(s) 125, 161, 224
Fsp4HI GCNGC 1 cut(s) 228
GluI GCNGC 1 cut(s) 228
HapII CCGG 1 cut(s) 198
Hin1II CATG 1 cut(s) 173
HindIII AAGCTT 1 cut(s) 292
HinfI GANTC 1 cut(s) 245
HpaII CCGG 1 cut(s) 198
HphI GGTGA 2 cut(s) 139, 212
Hpy188I TCNGA 2 cut(s) 136, 241
Hpy188III TCNNGA 2 cut(s) 161, 170
Hsp92II CATG 1 cut(s) 173
Ksp22I TGATCA 1 cut(s) 19
Kzo9I GATC 4 cut(s) 19, 100, 270, 279
LpnPI CCDG 5 cut(s) 90, 117, 211, 216, 237
Lsp1109I GCAGC 1 cut(s) 214
LweI GCATC 4 cut(s) 112, 127, 139, 193
MaeIII GTNAC 1 cut(s) 127
MalI GATC 4 cut(s) 21, 102, 272, 281
MboI GATC 4 cut(s) 19, 100, 270, 279
MboII GAAGA 2 cut(s) 86, 197
MluCI AATT 2 cut(s) 46, 235
MlyI GAGTC 1 cut(s) 254
MmeI TCCRAC 1 cut(s) 90
MnlI CCTC 2 cut(s) 142, 231
MroXI GAANNNNTTC 1 cut(s) 257
MspI CCGG 1 cut(s) 198
MspR9I CCNGG 1 cut(s) 105
MvaI CCWGG 1 cut(s) 105
NdeII GATC 4 cut(s) 19, 100, 270, 279
NlaIII CATG 1 cut(s) 173
NmuCI GTSAC 1 cut(s) 127
PagI TCATGA 1 cut(s) 169
PdmI GAANNNNTTC 1 cut(s) 257
PinAI ACCGGT 1 cut(s) 197
PkrI GCNGC 1 cut(s) 229
PleI GAGTC 1 cut(s) 253
PpsI GAGTC 1 cut(s) 253
Psp6I CCWGG 1 cut(s) 103
PspEI GGTNACC 1 cut(s) 127
PspGI CCWGG 1 cut(s) 103
SatI GCNGC 1 cut(s) 228
Sau3AI GATC 4 cut(s) 19, 100, 270, 279
SchI GAGTC 1 cut(s) 254
ScrFI CCNGG 1 cut(s) 105
SetI ASST 2 cut(s) 134, 296
SfaNI GCATC 4 cut(s) 112, 127, 139, 193
SgeI CNNG 9 cut(s) 50, 80, 116, 117, 173, 182, 210, 236, 243
SmlI CTYRAG 1 cut(s) 161
SmoI CTYRAG 1 cut(s) 161
Sse9I AATT 2 cut(s) 46, 235
SsiI CCGC 1 cut(s) 125
StyD4I CCNGG 1 cut(s) 103
TasI AATT 2 cut(s) 46, 235
TseFI GTSAC 1 cut(s) 127
TseI GCWGC 1 cut(s) 227
Tsp45I GTSAC 1 cut(s) 127
TspDTI ATGAA 6 cut(s) 66, 158, 198, 250, 254, 266
TspGWI ACGGA 1 cut(s) 161
XmnI GAANNNNTTC 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.