Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0002408

Physical Location & Seq

Genomic Coordinates Reverse (-)

56828685 .. 56830909

Gene Structure 2225 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009715

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGCTGATGCAAGCTATCAAGCTAGAGGCCGACAGTGAGACTGTGTCACTCCGTGAAGACGTGCTCGATCTTAGCCACATTTGCACTCGCCGTTTGACAATACCTTCCACCGCCGATTGCAGCGTTGAACTCGAATCTACCGTCGTCGGATCCTTCAGAGATTCTACTCCTCCAAAACAGAGGCTGAGATCCAATTCGTCGTTGATGAAGATGAGTTCGATGAAATGCAAGCGTGTCGCAATTGCTTCCGTTGCGAAATTACGCAGTGTTGAGGTCGAATCCGAGAGGAGAGTCGAGGAGCTAGTTGGATCCAGGGGTGATTTGGCTCCTCAGAAGCGGAAGTTGAGGTCCGATTTATCATCGGCGCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0022402 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044786 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA_22 Cdc6_C

Protein Analysis

124

Amino Acids

13.62

Weight (kDa)

9.21

Isoelectric Point (pI)

76.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002408)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0117421 RchiOBHm_Chr2g0147571
rosa_laevigata	RLG00000009715 RLG00000036789
rosa_multiflora	Rmu_sc0005551.1_g000001 Rmu_sc0005551.1_g000002 Rmu_sc0006255.1_g000001 Rmu_sc0006255.1_g000006 Rmu_sc0006255.1_g000008 Rmu_sc0006368.1_g000001 Rmu_sc0008753.1_g000001 Rmu_sc0010335.1_g000001 Rmu_sc0010420.1_g000002 Rmu_sc0013459.1_g000003 Rmu_sc0029520.1_g000001 Rmu_sc0031364.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029450 Rroxscaffold_1G00029500 Rroxscaffold_1G00029570 Rroxscaffold_1G00029580 Rroxscaffold_1G00029590 Rroxscaffold_5G00379910 Rroxscaffold_7G00209950
rosa_rugosa	Rorug01G0060000 Rorug03G0369200.1 Rorug05G0426400 Rorug05G0426500 Rorug05G0426600
rosa_samantha	Rh1AG147300 Rh1BG061700 Rh1CG138600 Rh2BG280100 Rh2BG537700 Rh2CG258400 Rh2CG272200 Rh2DG275000 Rh2DG290600 Rh2DG294200 Rh2DG294400 Rh5BG473700 Rh7AG238100 Rh7CG254700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	364
AciI	CCGC	2 cut(s)	111, 337
AclWI	GGATC	5 cut(s)	144, 157, 183, 303, 316
AcuI	CTGAAG	1 cut(s)	139
AcyI	GRCGYC	1 cut(s)	365
AdeI	CACNNNGTG	1 cut(s)	53
AgsI	TTSAA	1 cut(s)	128
AjiI	CACGTC	1 cut(s)	61
AjnI	CCWGG	1 cut(s)	311
AluBI	AGCT	3 cut(s)	14, 22, 301
AluI	AGCT	3 cut(s)	14, 22, 301
Alw21I	GWGCWC	1 cut(s)	66
Alw26I	GTCTC	1 cut(s)	32
AlwI	GGATC	5 cut(s)	144, 157, 183, 303, 316
AlwNI	CAGNNNCTG	1 cut(s)	184
AoxI	GGCC	1 cut(s)	27
ApeKI	GCWGC	1 cut(s)	120
ArsI	GACNNNNNNTTYG	2 cut(s)	126, 158
AspLEI	GCGC	1 cut(s)	367
AspS9I	GGNCC	1 cut(s)	348
AsuHPI	GGTGA	1 cut(s)	329
AvaII	GGWCC	1 cut(s)	348
BamHI	GGATCC	2 cut(s)	149, 308
BanI	GGYRCC	1 cut(s)	364
BbsI	GAAGAC	1 cut(s)	63
Bbv12I	GWGCWC	1 cut(s)	66
BbvI	GCAGC	1 cut(s)	132
BceAI	ACGGC	1 cut(s)	75
BcgI	CGANNNNNNTGC	2 cut(s)	217, 251
BciT130I	CCWGG	1 cut(s)	313
BcoDI	GTCTC	1 cut(s)	32
BfaI	CTAG	2 cut(s)	23, 302
BfoI	RGCGCY	1 cut(s)	368
BisI	GCNGC	1 cut(s)	121
BlsI	GCNGC	1 cut(s)	122
Bme1390I	CCNGG	1 cut(s)	313
Bme18I	GGWCC	1 cut(s)	348
BmgBI	CACGTC	1 cut(s)	61
BmgT120I	GGNCC	1 cut(s)	348
BmiI	GGNNCC	4 cut(s)	151, 310, 327, 366
BmrFI	CCNGG	1 cut(s)	313
BpiI	GAAGAC	1 cut(s)	63
BsaHI	GRCGYC	1 cut(s)	365
BsaJI	CCNNGG	1 cut(s)	312
BseBI	CCWGG	1 cut(s)	313
BseDI	CCNNGG	1 cut(s)	312
BseMII	CTCAG	2 cut(s)	176, 344
BseRI	GAGGAG	4 cut(s)	159, 301, 311, 318
BseXI	GCAGC	1 cut(s)	132
BshFI	GGCC	1 cut(s)	29
BshNI	GGYRCC	1 cut(s)	364
BsiHKAI	GWGCWC	1 cut(s)	66
BsmAI	GTCTC	1 cut(s)	32
BsnI	GGCC	1 cut(s)	29
Bsp1286I	GDGCHC	1 cut(s)	66
Bsp143I	GATC	4 cut(s)	67, 149, 188, 308
BspACI	CCGC	2 cut(s)	111, 337
BspANI	GGCC	1 cut(s)	29
BspCNI	CTCAG	2 cut(s)	177, 343
BspLI	GGNNCC	4 cut(s)	151, 310, 327, 366
BspPI	GGATC	5 cut(s)	144, 157, 183, 303, 316
BspT107I	GGYRCC	1 cut(s)	364
BssECI	CCNNGG	1 cut(s)	312
BssMI	GATC	4 cut(s)	67, 149, 188, 308
BssNI	GRCGYC	1 cut(s)	365
Bst2UI	CCWGG	1 cut(s)	313
Bst4CI	ACNGT	3 cut(s)	35, 43, 142
BstACI	GRCGYC	1 cut(s)	365
BstC8I	GCNNGC	2 cut(s)	12, 230
BstDEI	CTNAG	4 cut(s)	71, 185, 330, 369
BstH2I	RGCGCY	1 cut(s)	368
BstHHI	GCGC	1 cut(s)	367
BstKTI	GATC	4 cut(s)	70, 152, 191, 311
BstMAI	GTCTC	1 cut(s)	32
BstMBI	GATC	4 cut(s)	67, 149, 188, 308
BstMWI	GCNNNNNNNGC	2 cut(s)	81, 251
BstNI	CCWGG	1 cut(s)	313
BstSCI	CCNGG	1 cut(s)	311
BstV1I	GCAGC	1 cut(s)	132
BstV2I	GAAGAC	1 cut(s)	63
BstX2I	RGATCY	3 cut(s)	149, 188, 308
BstYI	RGATCY	3 cut(s)	149, 188, 308
BsuRI	GGCC	1 cut(s)	29
BtrI	CACGTC	1 cut(s)	61
BtsI	GCAGTG	1 cut(s)	271
BtsIMutI	CAGTG	2 cut(s)	40, 271
Cac8I	GCNNGC	2 cut(s)	12, 230
CaiI	CAGNNNCTG	1 cut(s)	184
CfoI	GCGC	1 cut(s)	367
Cfr13I	GGNCC	1 cut(s)	348
CviJI	RGCY	7 cut(s)	14, 22, 29, 75, 184, 301, 326
CviKI_1	RGCY	7 cut(s)	14, 22, 29, 75, 184, 301, 326
DdeI	CTNAG	4 cut(s)	71, 185, 330, 369
DinI	GGCGCC	1 cut(s)	366
DpnI	GATC	4 cut(s)	69, 151, 190, 310
DpnII	GATC	4 cut(s)	67, 149, 188, 308
DraIII	CACNNNGTG	1 cut(s)	53
Eco47I	GGWCC	1 cut(s)	348
Eco57I	CTGAAG	1 cut(s)	139
EcoRII	CCWGG	1 cut(s)	311
EgeI	GGCGCC	1 cut(s)	366
EheI	GGCGCC	1 cut(s)	366
Fnu4HI	GCNGC	1 cut(s)	121
Fsp4HI	GCNGC	1 cut(s)	121
FspBI	CTAG	2 cut(s)	23, 302
GlaI	GCGC	1 cut(s)	366
GluI	GCNGC	1 cut(s)	121
HaeII	RGCGCY	1 cut(s)	368
HaeIII	GGCC	1 cut(s)	29
HhaI	GCGC	1 cut(s)	367
Hin1I	GRCGYC	1 cut(s)	365
Hin6I	GCGC	1 cut(s)	365
HinP1I	GCGC	1 cut(s)	365
HinfI	GANTC	4 cut(s)	134, 161, 278, 291
HphI	GGTGA	1 cut(s)	329
Hpy188I	TCNGA	5 cut(s)	149, 158, 283, 333, 352
Hpy99I	CGWCG	3 cut(s)	146, 149, 202
HpyAV	CCTTC	2 cut(s)	114, 163
HpyCH4III	ACNGT	3 cut(s)	35, 43, 142
HpyCH4IV	ACGT	1 cut(s)	60
HpyCH4V	TGCA	4 cut(s)	10, 84, 120, 228
HpyF10VI	GCNNNNNNNGC	2 cut(s)	81, 251
HpyF3I	CTNAG	4 cut(s)	71, 185, 330, 369
HpySE526I	ACGT	1 cut(s)	60
Hsp92I	GRCGYC	1 cut(s)	365
HspAI	GCGC	1 cut(s)	365
KasI	GGCGCC	1 cut(s)	364
Kzo9I	GATC	4 cut(s)	67, 149, 188, 308
LmnI	GCTCC	2 cut(s)	298, 331
LpnPI	CCDG	2 cut(s)	298, 325
Lsp1109I	GCAGC	1 cut(s)	132
MaeI	CTAG	2 cut(s)	23, 302
MaeII	ACGT	1 cut(s)	60
MaeIII	GTNAC	1 cut(s)	45
MalI	GATC	4 cut(s)	69, 151, 190, 310
MboI	GATC	4 cut(s)	67, 149, 188, 308
MboII	GAAGA	2 cut(s)	68, 220
MfeI	CAATTG	1 cut(s)	240
MflI	RGATCY	3 cut(s)	149, 188, 308
MhlI	GDGCHC	1 cut(s)	66
MluCI	AATT	3 cut(s)	193, 240, 257
Mly113I	GGCGCC	1 cut(s)	365
MlyI	GAGTC	1 cut(s)	300
MmeI	TCCRAC	2 cut(s)	127, 286
MnlI	CCTC	8 cut(s)	19, 174, 180, 265, 279, 289, 339, 339
MspR9I	CCNGG	1 cut(s)	313
MunI	CAATTG	1 cut(s)	240
MvaI	CCWGG	1 cut(s)	313
MwoI	GCNNNNNNNGC	2 cut(s)	81, 251
NarI	GGCGCC	1 cut(s)	365
NdeII	GATC	4 cut(s)	67, 149, 188, 308
NlaIV	GGNNCC	4 cut(s)	151, 310, 327, 366
NmuCI	GTSAC	1 cut(s)	45
PcsI	WCGNNNNNNNCGW	1 cut(s)	138
PfeI	GAWTC	3 cut(s)	134, 161, 278
PflFI	GACNNNGTC	1 cut(s)	43
PkrI	GCNGC	1 cut(s)	122
PleI	GAGTC	1 cut(s)	299
PluTI	GGCGCC	1 cut(s)	368
PpsI	GAGTC	1 cut(s)	299
Psp6I	CCWGG	1 cut(s)	311
PspGI	CCWGG	1 cut(s)	311
PspN4I	GGNNCC	4 cut(s)	151, 310, 327, 366
PspPI	GGNCC	1 cut(s)	348
PstNI	CAGNNNCTG	1 cut(s)	184
PsuI	RGATCY	3 cut(s)	149, 188, 308
PsyI	GACNNNGTC	1 cut(s)	43
SatI	GCNGC	1 cut(s)	121
Sau3AI	GATC	4 cut(s)	67, 149, 188, 308
Sau96I	GGNCC	1 cut(s)	348
SchI	GAGTC	1 cut(s)	300
ScrFI	CCNGG	1 cut(s)	313
SduI	GDGCHC	1 cut(s)	66
SetI	ASST	7 cut(s)	16, 24, 63, 106, 276, 303, 350
SfoI	GGCGCC	1 cut(s)	366
SinI	GGWCC	1 cut(s)	348
Sse9I	AATT	3 cut(s)	193, 240, 257
SsiI	CCGC	2 cut(s)	111, 337
SspDI	GGCGCC	1 cut(s)	364
SspMI	CTAG	2 cut(s)	23, 302
StyD4I	CCNGG	1 cut(s)	311
TaaI	ACNGT	3 cut(s)	35, 43, 142
TaiI	ACGT	1 cut(s)	63
TaqI	TCGA	5 cut(s)	66, 132, 218, 276, 294
TasI	AATT	3 cut(s)	193, 240, 257
TfiI	GAWTC	3 cut(s)	134, 161, 278
TscAI	CASTG	2 cut(s)	40, 271
TseFI	GTSAC	1 cut(s)	45
TseI	GCWGC	1 cut(s)	120
Tsp45I	GTSAC	1 cut(s)	45
TspDTI	ATGAA	2 cut(s)	221, 236
TspGWI	ACGGA	2 cut(s)	41, 238
TspRI	CASTG	2 cut(s)	40, 271
Tth111I	GACNNNGTC	1 cut(s)	43
VpaK11BI	GGWCC	1 cut(s)	348
XcmI	CCANNNNNNNNNTGG	1 cut(s)	319
XspI	CTAG	2 cut(s)	23, 302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.