Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002408

Physical Location & Seq

Genomic Coordinates Reverse (-)

74592826 .. 74593179

Gene Structure 354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG537700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGCCTTCCATCGCCGACCGCAGCGTCGAACTCCAATCCAACGCCGTCGGATCCGCCGGAGTTTCTACTCCTCCGAAACGGAGGCTGAGATCCAATTCGTCGCCGATGAAGCTGAGTCCGGTGAAATGCAAGCGCGTCGGAATTTCTTCCGTCGCGAAATTACGCAGCGTTGTGGTCGAATCGGAGAGGAGCGTGGAGGAGGTAGTCGGATCCGGCGGTGATTTGACTCCTCAGAAGCGGAAGTTGAGGTCCGATTCGTCGTCGCCGATGAAGTGTAAATCGGCTCGCCGGAACCTCAGTGCTTGCACCAGCACTCCTGCAAATGTGAGATTTGGATTGGATAGTAAGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0022402 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044786 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA_22 Cdc6_C

Protein Analysis

117

Amino Acids

12.46

Weight (kDa)

10.73

Isoelectric Point (pI)

98.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002408)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0117421 RchiOBHm_Chr2g0147571
rosa_laevigata	RLG00000009715 RLG00000036789
rosa_multiflora	Rmu_sc0005551.1_g000001 Rmu_sc0005551.1_g000002 Rmu_sc0006255.1_g000001 Rmu_sc0006255.1_g000006 Rmu_sc0006255.1_g000008 Rmu_sc0006368.1_g000001 Rmu_sc0008753.1_g000001 Rmu_sc0010335.1_g000001 Rmu_sc0010420.1_g000002 Rmu_sc0013459.1_g000003 Rmu_sc0029520.1_g000001 Rmu_sc0031364.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029450 Rroxscaffold_1G00029500 Rroxscaffold_1G00029570 Rroxscaffold_1G00029580 Rroxscaffold_1G00029590 Rroxscaffold_5G00379910 Rroxscaffold_7G00209950
rosa_rugosa	Rorug01G0060000 Rorug03G0369200.1 Rorug05G0426400 Rorug05G0426500 Rorug05G0426600
rosa_samantha	Rh1AG147300 Rh1BG061700 Rh1CG138600 Rh2BG280100 Rh2BG537700 Rh2CG258400 Rh2CG272200 Rh2DG275000 Rh2DG290600 Rh2DG294200 Rh2DG294400 Rh5BG473700 Rh7AG238100 Rh7CG254700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	23
AccII	CGCG	2 cut(s)	135, 155
AciI	CCGC	4 cut(s)	19, 54, 216, 238
AclWI	GGATC	5 cut(s)	45, 58, 84, 204, 217
AcsI	RAATTY	1 cut(s)	141
AluBI	AGCT	1 cut(s)	112
AluI	AGCT	1 cut(s)	112
AlwI	GGATC	5 cut(s)	45, 58, 84, 204, 217
ApeKI	GCWGC	2 cut(s)	21, 165
ApoI	RAATTY	1 cut(s)	141
Asp700I	GAANNNNTTC	1 cut(s)	145
AspLEI	GCGC	1 cut(s)	135
AspS9I	GGNCC	1 cut(s)	249
AsuHPI	GGTGA	2 cut(s)	133, 230
AvaII	GGWCC	1 cut(s)	249
BamHI	GGATCC	2 cut(s)	50, 209
BbvI	GCAGC	2 cut(s)	33, 177
BccI	CCATC	1 cut(s)	17
BceAI	ACGGC	1 cut(s)	29
BcgI	CGANNNNNNTGC	2 cut(s)	118, 152
BisI	GCNGC	2 cut(s)	22, 166
BlsI	GCNGC	2 cut(s)	23, 167
Bme18I	GGWCC	1 cut(s)	249
BmgT120I	GGNCC	1 cut(s)	249
BmiI	GGNNCC	3 cut(s)	52, 211, 293
BsaWI	WCCGGW	1 cut(s)	118
BsaXI	ACNNNNNCTCC	2 cut(s)	298, 328
BseMII	CTCAG	4 cut(s)	77, 104, 245, 310
BseRI	GAGGAG	4 cut(s)	60, 202, 212, 219
BseXI	GCAGC	2 cut(s)	33, 177
Bsh1236I	CGCG	2 cut(s)	135, 155
Bsh1285I	CGRYCG	1 cut(s)	19
BsiEI	CGRYCG	1 cut(s)	19
BsiSI	CCGG	4 cut(s)	57, 119, 213, 289
Bsp143I	GATC	3 cut(s)	50, 89, 209
Bsp68I	TCGCGA	1 cut(s)	155
BspACI	CCGC	4 cut(s)	19, 54, 216, 238
BspCNI	CTCAG	4 cut(s)	78, 105, 244, 309
BspFNI	CGCG	2 cut(s)	135, 155
BspLI	GGNNCC	3 cut(s)	52, 211, 293
BspPI	GGATC	5 cut(s)	45, 58, 84, 204, 217
BssMI	GATC	3 cut(s)	50, 89, 209
BstC8I	GCNNGC	3 cut(s)	131, 286, 304
BstDEI	CTNAG	4 cut(s)	86, 113, 231, 296
BstFNI	CGCG	2 cut(s)	135, 155
BstHHI	GCGC	1 cut(s)	135
BstKTI	GATC	3 cut(s)	53, 92, 212
BstMBI	GATC	3 cut(s)	50, 89, 209
BstMCI	CGRYCG	1 cut(s)	19
BstMWI	GCNNNNNNNGC	1 cut(s)	109
BstUI	CGCG	2 cut(s)	135, 155
BstV1I	GCAGC	2 cut(s)	33, 177
BstX2I	RGATCY	3 cut(s)	50, 89, 209
BstYI	RGATCY	3 cut(s)	50, 89, 209
BtsIMutI	CAGTG	1 cut(s)	304
BtuMI	TCGCGA	1 cut(s)	155
Cac8I	GCNNGC	3 cut(s)	131, 286, 304
CfoI	GCGC	1 cut(s)	135
Cfr13I	GGNCC	1 cut(s)	249
CseI	GACGC	2 cut(s)	13, 124
CviJI	RGCY	3 cut(s)	85, 112, 284
CviKI_1	RGCY	3 cut(s)	85, 112, 284
DdeI	CTNAG	4 cut(s)	86, 113, 231, 296
DpnI	GATC	3 cut(s)	52, 91, 211
DpnII	GATC	3 cut(s)	50, 89, 209
DrdI	GACNNNNNNGTC	1 cut(s)	23
DseDI	GACNNNNNNGTC	1 cut(s)	23
EciI	GGCGGA	1 cut(s)	43
Eco47I	GGWCC	1 cut(s)	249
Fnu4HI	GCNGC	2 cut(s)	22, 166
Fsp4HI	GCNGC	2 cut(s)	22, 166
GlaI	GCGC	1 cut(s)	134
GluI	GCNGC	2 cut(s)	22, 166
HapII	CCGG	4 cut(s)	57, 119, 213, 289
HgaI	GACGC	2 cut(s)	13, 124
HhaI	GCGC	1 cut(s)	135
Hin6I	GCGC	1 cut(s)	133
HinP1I	GCGC	1 cut(s)	133
HinfI	GANTC	4 cut(s)	115, 179, 226, 254
HpaII	CCGG	4 cut(s)	57, 119, 213, 289
HphI	GGTGA	2 cut(s)	133, 230
Hpy188I	TCNGA	7 cut(s)	50, 75, 140, 184, 209, 234, 253
Hpy188III	TCNNGA	1 cut(s)	154
Hpy99I	CGWCG	7 cut(s)	29, 50, 103, 140, 155, 262, 265
HpyAV	CCTTC	1 cut(s)	15
HpyCH4V	TGCA	3 cut(s)	129, 306, 320
HpyF10VI	GCNNNNNNNGC	1 cut(s)	109
HpyF3I	CTNAG	4 cut(s)	86, 113, 231, 296
HspAI	GCGC	1 cut(s)	133
Kzo9I	GATC	3 cut(s)	50, 89, 209
LmnI	GCTCC	1 cut(s)	189
LpnPI	CCDG	6 cut(s)	70, 132, 226, 302, 322, 330
Lsp1109I	GCAGC	2 cut(s)	33, 177
MalI	GATC	3 cut(s)	52, 91, 211
MboI	GATC	3 cut(s)	50, 89, 209
MboII	GAAGA	1 cut(s)	138
MflI	RGATCY	3 cut(s)	50, 89, 209
MluCI	AATT	4 cut(s)	94, 141, 158, 349
MlyI	GAGTC	2 cut(s)	124, 220
MmeI	TCCRAC	4 cut(s)	28, 63, 118, 187
MnlI	CCTC	8 cut(s)	75, 81, 180, 190, 193, 240, 240, 305
MroXI	GAANNNNTTC	1 cut(s)	145
MspI	CCGG	4 cut(s)	57, 119, 213, 289
MvnI	CGCG	2 cut(s)	135, 155
MwoI	GCNNNNNNNGC	1 cut(s)	109
NdeII	GATC	3 cut(s)	50, 89, 209
NlaIV	GGNNCC	3 cut(s)	52, 211, 293
NruI	TCGCGA	1 cut(s)	155
PcsI	WCGNNNNNNNCGW	1 cut(s)	263
PdmI	GAANNNNTTC	1 cut(s)	145
PfeI	GAWTC	2 cut(s)	179, 254
PkrI	GCNGC	2 cut(s)	23, 167
PleI	GAGTC	2 cut(s)	123, 220
PpsI	GAGTC	2 cut(s)	123, 220
PspN4I	GGNNCC	3 cut(s)	52, 211, 293
PspPI	GGNCC	1 cut(s)	249
PsuI	RGATCY	3 cut(s)	50, 89, 209
RruI	TCGCGA	1 cut(s)	155
SatI	GCNGC	2 cut(s)	22, 166
Sau3AI	GATC	3 cut(s)	50, 89, 209
Sau96I	GGNCC	1 cut(s)	249
SchI	GAGTC	2 cut(s)	124, 220
SetI	ASST	4 cut(s)	114, 204, 251, 297
SinI	GGWCC	1 cut(s)	249
Sse9I	AATT	4 cut(s)	94, 141, 158, 349
SsiI	CCGC	4 cut(s)	19, 54, 216, 238
TaqI	TCGA	2 cut(s)	27, 177
TasI	AATT	4 cut(s)	94, 141, 158, 349
TfiI	GAWTC	2 cut(s)	179, 254
TscAI	CASTG	1 cut(s)	304
TseI	GCWGC	2 cut(s)	21, 165
TspDTI	ATGAA	2 cut(s)	122, 284
TspGWI	ACGGA	2 cut(s)	94, 139
TspRI	CASTG	1 cut(s)	304
VpaK11BI	GGWCC	1 cut(s)	249
XapI	RAATTY	1 cut(s)	141
XmnI	GAANNNNTTC	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.