Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002408

Physical Location & Seq

Genomic Coordinates Reverse (-)

30627889 .. 30628476

Gene Structure 588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG275000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGAATGGCGGTTGCGCTAATACTCCTCAGAAGCGGAAGTTAAGGTCGGATTCGTCGTCGCCGATGAAGCCGAGACCGGTCTCATCACCGATGAAGTGTAAATTGGCTCGCCGGAACCTCAGTGCTTGCATCAATACTCCTGCAAATGGAATTGAGAAGTATTTCAGTCAGAAAAAGCCTCAAGCCTATTGCAAACCACCGGTTGTTGTTATGCCGAACTGGAATCCCAGAGGCAAGCCTTGTTCAAGCAAAGTCAGACTAAATTTTGGGAGAAAATGTGTTTGTTTTGTTTTTAAATTAGCAAATTGTGTTGAATTTGTAGATAAGGAGCAGATGAGGATAGTGAAGGAGGCATTGCACTTGTCTACGGTTCCCTCTAGTGTTGCGTGCCGCGACGTGGAGCAGAAGGTTCTGGAGTTCTGCAAGTCATACATAGAGCAAGAGAAGGCTCATGGATACAGTTTTGGATTAGGTAGAAACTCATTTGTTGATATTTGTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0022402 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044786 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA_22 Cdc6_C

Protein Analysis

167

Amino Acids

18.79

Weight (kDa)

9.66

Isoelectric Point (pI)

45.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002408)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0117421 RchiOBHm_Chr2g0147571
rosa_laevigata	RLG00000009715 RLG00000036789
rosa_multiflora	Rmu_sc0005551.1_g000001 Rmu_sc0005551.1_g000002 Rmu_sc0006255.1_g000001 Rmu_sc0006255.1_g000006 Rmu_sc0006255.1_g000008 Rmu_sc0006368.1_g000001 Rmu_sc0008753.1_g000001 Rmu_sc0010335.1_g000001 Rmu_sc0010420.1_g000002 Rmu_sc0013459.1_g000003 Rmu_sc0029520.1_g000001 Rmu_sc0031364.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029450 Rroxscaffold_1G00029500 Rroxscaffold_1G00029570 Rroxscaffold_1G00029580 Rroxscaffold_1G00029590 Rroxscaffold_5G00379910 Rroxscaffold_7G00209950
rosa_rugosa	Rorug01G0060000 Rorug03G0369200.1 Rorug05G0426400 Rorug05G0426500 Rorug05G0426600
rosa_samantha	Rh1AG147300 Rh1BG061700 Rh1CG138600 Rh2BG280100 Rh2BG537700 Rh2CG258400 Rh2CG272200 Rh2DG275000 Rh2DG290600 Rh2DG294200 Rh2DG294400 Rh5BG473700 Rh7AG238100 Rh7CG254700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	365
AccII	CGCG	1 cut(s)	393
AciI	CCGC	3 cut(s)	9, 34, 391
AcsI	RAATTY	2 cut(s)	262, 314
AfiI	CCNNNNNNNGG	2 cut(s)	146, 397
AgeI	ACCGGT	2 cut(s)	76, 199
AgsI	TTSAA	2 cut(s)	246, 314
AjiI	CACGTC	1 cut(s)	397
AjuI	GAANNNNNNNTTGG	2 cut(s)	86, 118
Alw26I	GTCTC	2 cut(s)	67, 85
ApoI	RAATTY	2 cut(s)	262, 314
AsiGI	ACCGGT	2 cut(s)	76, 199
Asp700I	GAANNNNTTC	1 cut(s)	161
AspLEI	GCGC	1 cut(s)	17
AsuHPI	GGTGA	1 cut(s)	78
BciVI	GTATCC	1 cut(s)	449
BcoDI	GTCTC	2 cut(s)	67, 85
BfaI	CTAG	1 cut(s)	378
BfuI	GTATCC	1 cut(s)	449
BisI	GCNGC	1 cut(s)	391
BlsI	GCNGC	1 cut(s)	392
BmgBI	CACGTC	1 cut(s)	397
BmiI	GGNNCC	2 cut(s)	116, 372
BmsI	GCATC	1 cut(s)	138
BpmI	CTGGAG	1 cut(s)	434
BpuEI	CTTGAG	1 cut(s)	165
BsaI	GGTCTC	2 cut(s)	67, 85
BsaWI	WCCGGW	2 cut(s)	76, 199
BsaXI	ACNNNNNCTCC	2 cut(s)	262, 292
Bsc4I	CCNNNNNNNGG	2 cut(s)	146, 397
Bse118I	RCCGGY	2 cut(s)	76, 199
Bse1I	ACTGG	1 cut(s)	224
Bse3DI	GCAATG	1 cut(s)	353
BseLI	CCNNNNNNNGG	2 cut(s)	146, 397
BseMI	GCAATG	1 cut(s)	353
BseMII	CTCAG	2 cut(s)	41, 133
BseNI	ACTGG	1 cut(s)	224
BseRI	GAGGAG	1 cut(s)	15
Bsh1236I	CGCG	1 cut(s)	393
BshTI	ACCGGT	2 cut(s)	76, 199
BsiSI	CCGG	3 cut(s)	77, 112, 200
BslI	CCNNNNNNNGG	2 cut(s)	146, 397
BsmAI	GTCTC	2 cut(s)	67, 85
Bso31I	GGTCTC	2 cut(s)	67, 85
BspACI	CCGC	3 cut(s)	9, 34, 391
BspCNI	CTCAG	2 cut(s)	40, 132
BspFNI	CGCG	1 cut(s)	393
BspLI	GGNNCC	2 cut(s)	116, 372
BspTNI	GGTCTC	2 cut(s)	67, 85
BsrDI	GCAATG	1 cut(s)	353
BsrFI	RCCGGY	2 cut(s)	76, 199
BsrI	ACTGG	1 cut(s)	224
BssAI	RCCGGY	2 cut(s)	76, 199
Bst4CI	ACNGT	2 cut(s)	370, 461
BstC8I	GCNNGC	4 cut(s)	109, 127, 236, 388
BstDEI	CTNAG	2 cut(s)	27, 119
BstFNI	CGCG	1 cut(s)	393
BstHHI	GCGC	1 cut(s)	17
BstMAI	GTCTC	2 cut(s)	67, 85
BstMWI	GCNNNNNNNGC	1 cut(s)	67
BstUI	CGCG	1 cut(s)	393
BsuI	GTATCC	1 cut(s)	449
BtrI	CACGTC	1 cut(s)	397
BtsIMutI	CAGTG	1 cut(s)	127
Cac8I	GCNNGC	4 cut(s)	109, 127, 236, 388
CfoI	GCGC	1 cut(s)	17
Cfr10I	RCCGGY	2 cut(s)	76, 199
CspAI	ACCGGT	2 cut(s)	76, 199
CviAII	CATG	1 cut(s)	452
CviJI	RGCY	6 cut(s)	70, 107, 178, 185, 238, 449
CviKI_1	RGCY	6 cut(s)	70, 107, 178, 185, 238, 449
DdeI	CTNAG	2 cut(s)	27, 119
DraI	TTTAAA	1 cut(s)	295
Eco31I	GGTCTC	2 cut(s)	67, 85
FaeI	CATG	1 cut(s)	455
FaiI	YATR	4 cut(s)	212, 430, 434, 453
FatI	CATG	1 cut(s)	451
FblI	GTMKAC	1 cut(s)	365
Fnu4HI	GCNGC	1 cut(s)	391
Fsp4HI	GCNGC	1 cut(s)	391
FspBI	CTAG	1 cut(s)	378
GlaI	GCGC	1 cut(s)	16
GluI	GCNGC	1 cut(s)	391
GsuI	CTGGAG	1 cut(s)	434
HapII	CCGG	3 cut(s)	77, 112, 200
HhaI	GCGC	1 cut(s)	17
Hin1II	CATG	1 cut(s)	455
Hin6I	GCGC	1 cut(s)	15
HinP1I	GCGC	1 cut(s)	15
HinfI	GANTC	2 cut(s)	50, 223
HpaII	CCGG	3 cut(s)	77, 112, 200
HphI	GGTGA	1 cut(s)	78
Hpy166II	GTNNAC	1 cut(s)	366
Hpy188I	TCNGA	4 cut(s)	30, 49, 171, 257
Hpy188III	TCNNGA	1 cut(s)	413
Hpy8I	GTNNAC	1 cut(s)	366
Hpy99I	CGWCG	3 cut(s)	58, 61, 398
HpyAV	CCTTC	3 cut(s)	340, 400, 439
HpyCH4III	ACNGT	2 cut(s)	370, 461
HpyCH4IV	ACGT	1 cut(s)	396
HpyCH4V	TGCA	5 cut(s)	129, 143, 192, 358, 423
HpyF10VI	GCNNNNNNNGC	1 cut(s)	67
HpyF3I	CTNAG	2 cut(s)	27, 119
HpySE526I	ACGT	1 cut(s)	396
Hsp92II	CATG	1 cut(s)	455
HspAI	GCGC	1 cut(s)	15
LmnI	GCTCC	2 cut(s)	328, 400
LpnPI	CCDG	7 cut(s)	90, 125, 153, 205, 213, 241, 398
LweI	GCATC	1 cut(s)	138
MaeI	CTAG	1 cut(s)	378
MaeII	ACGT	1 cut(s)	396
MluCI	AATT	6 cut(s)	101, 150, 262, 296, 304, 314
MmeI	TCCRAC	1 cut(s)	27
MnlI	CCTC	7 cut(s)	36, 128, 189, 224, 330, 343, 385
MroXI	GAANNNNTTC	1 cut(s)	161
MseI	TTAA	2 cut(s)	41, 294
MspI	CCGG	3 cut(s)	77, 112, 200
MvnI	CGCG	1 cut(s)	393
MwoI	GCNNNNNNNGC	1 cut(s)	67
NlaIII	CATG	1 cut(s)	455
NlaIV	GGNNCC	2 cut(s)	116, 372
NmeAIII	GCCGAG	1 cut(s)	96
PcsI	WCGNNNNNNNCGW	2 cut(s)	53, 59
PdmI	GAANNNNTTC	1 cut(s)	161
PfeI	GAWTC	2 cut(s)	50, 223
PinAI	ACCGGT	2 cut(s)	76, 199
PkrI	GCNGC	1 cut(s)	392
PspN4I	GGNNCC	2 cut(s)	116, 372
SaqAI	TTAA	2 cut(s)	41, 294
SatI	GCNGC	1 cut(s)	391
SetI	ASST	5 cut(s)	47, 120, 399, 411, 475
SfaNI	GCATC	1 cut(s)	138
SmlI	CTYRAG	1 cut(s)	180
SmoI	CTYRAG	1 cut(s)	180
Sse9I	AATT	6 cut(s)	101, 150, 262, 296, 304, 314
SsiI	CCGC	3 cut(s)	9, 34, 391
SspMI	CTAG	1 cut(s)	378
TaaI	ACNGT	2 cut(s)	370, 461
TaiI	ACGT	1 cut(s)	399
TasI	AATT	6 cut(s)	101, 150, 262, 296, 304, 314
TauI	GCSGC	1 cut(s)	393
TfiI	GAWTC	2 cut(s)	50, 223
Tru1I	TTAA	2 cut(s)	41, 294
Tru9I	TTAA	2 cut(s)	41, 294
TscAI	CASTG	1 cut(s)	127
TspDTI	ATGAA	3 cut(s)	17, 80, 107
TspRI	CASTG	1 cut(s)	127
XapI	RAATTY	2 cut(s)	262, 314
XmiI	GTMKAC	1 cut(s)	365
XmnI	GAANNNNTTC	1 cut(s)	161
XspI	CTAG	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.