Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005551.1

Orthogroup ID

OG0002408

Physical Location & Seq

Genomic Coordinates Forward (+)

2509 .. 3630

Gene Structure 1122 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005551.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

atgccttccatcgccaaccacagcgtcgaactcgaatccaacgccgtcggatccgccggagttactactcctccgaaacggaggctgagatccaattcgtcgccgatgaagctgagtcaggtgaaatgcaagcgcgtcggaatttcttccgttgcaaaattacgcagcgttgtggtggaatcggagaggagcatggaggaggtaggcggatccagcggtgatttgactcctcagaagcggaagttgaggtccgattcgtcgtcgccgatgaagccgagaccggtctcgtcgccgatgaagtttaaatctgctcgccggaacctcagtgcttgcagcagcactcctgcaaatggaattgagaagtatttcaatcagaaaaagcctcaagccttttgcaaaccaccggttgttgctatgccgaattggaatcccaaaggcaagccttgtttaaacaaactgggattaaattttgggagaaaatgggtttgttttgtttctaaattagccaattctgttgaacttgtagatcaggagcagatgaggatagtgaaggaggcattgcacttgtctacagttcccactatagttgggtgccgcgacgtggagcagaagagggttttggagttctgcaagtcatgcatagagcaagagaaggccgggagtttatatgtatgcgggtgtcctggtaccggaaagtccttgtccatagagaaagtgaaacaacttttggtgaattgggcaggagagggtggatttcaggaaccggatgtgttggaattgaactgtacatcgctaacaaaaacttctgatattttcaccaagctactcaaattttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0022402 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044786 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA_22 Cdc6_C

Protein Analysis

278

Amino Acids

30.46

Weight (kDa)

9.67

Isoelectric Point (pI)

55.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002408)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0117421 RchiOBHm_Chr2g0147571
rosa_laevigata	RLG00000009715 RLG00000036789
rosa_multiflora	Rmu_sc0005551.1_g000001 Rmu_sc0005551.1_g000002 Rmu_sc0006255.1_g000001 Rmu_sc0006255.1_g000006 Rmu_sc0006255.1_g000008 Rmu_sc0006368.1_g000001 Rmu_sc0008753.1_g000001 Rmu_sc0010335.1_g000001 Rmu_sc0010420.1_g000002 Rmu_sc0013459.1_g000003 Rmu_sc0029520.1_g000001 Rmu_sc0031364.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029450 Rroxscaffold_1G00029500 Rroxscaffold_1G00029570 Rroxscaffold_1G00029580 Rroxscaffold_1G00029590 Rroxscaffold_5G00379910 Rroxscaffold_7G00209950
rosa_rugosa	Rorug01G0060000 Rorug03G0369200.1 Rorug05G0426400 Rorug05G0426500 Rorug05G0426600
rosa_samantha	Rh1AG147300 Rh1BG061700 Rh1CG138600 Rh2BG280100 Rh2BG537700 Rh2CG258400 Rh2CG272200 Rh2DG275000 Rh2DG290600 Rh2DG294200 Rh2DG294400 Rh5BG473700 Rh7AG238100 Rh7CG254700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	686
AccB1I	GGYRCC	2 cut(s)	591, 686
AccI	GTMKAC	1 cut(s)	569
AccII	CGCG	2 cut(s)	135, 597
AciI	CCGC	6 cut(s)	54, 207, 216, 238, 595, 675
AclWI	GGATC	5 cut(s)	45, 58, 84, 204, 217
AcsI	RAATTY	3 cut(s)	141, 466, 830
AfaI	GTAC	2 cut(s)	688, 787
AfiI	CCNNNNNNNGG	3 cut(s)	350, 601, 689
AgeI	ACCGGT	2 cut(s)	280, 403
AgsI	TTSAA	3 cut(s)	370, 518, 781
AjiI	CACGTC	1 cut(s)	601
AjnI	CCWGG	1 cut(s)	682
AjuI	GAANNNNNNNTTGG	4 cut(s)	602, 634, 710, 742
AluBI	AGCT	2 cut(s)	112, 823
AluI	AGCT	2 cut(s)	112, 823
Alw26I	GTCTC	2 cut(s)	271, 289
AlwI	GGATC	5 cut(s)	45, 58, 84, 204, 217
AoxI	GGCC	1 cut(s)	654
ApeKI	GCWGC	3 cut(s)	165, 333, 336
ApoI	RAATTY	3 cut(s)	141, 466, 830
AsiGI	ACCGGT	2 cut(s)	280, 403
Asp700I	GAANNNNTTC	2 cut(s)	145, 365
Asp718I	GGTACC	1 cut(s)	686
AspLEI	GCGC	1 cut(s)	135
AspS9I	GGNCC	1 cut(s)	249
AsuC2I	CCSGG	1 cut(s)	658
AsuHPI	GGTGA	4 cut(s)	133, 230, 742, 808
AvaII	GGWCC	1 cut(s)	249
BamHI	GGATCC	2 cut(s)	50, 209
BanI	GGYRCC	2 cut(s)	591, 686
BbvI	GCAGC	3 cut(s)	177, 345, 348
BccI	CCATC	1 cut(s)	17
BceAI	ACGGC	1 cut(s)	29
BcgI	CGANNNNNNTGC	2 cut(s)	118, 152
BciT130I	CCWGG	1 cut(s)	684
BcnI	CCSGG	1 cut(s)	658
BcoDI	GTCTC	2 cut(s)	271, 289
BfmI	CTRYAG	2 cut(s)	570, 582
BisI	GCNGC	4 cut(s)	166, 334, 337, 595
BlsI	GCNGC	4 cut(s)	167, 335, 338, 596
Bme1390I	CCNGG	2 cut(s)	658, 684
Bme18I	GGWCC	1 cut(s)	249
BmgBI	CACGTC	1 cut(s)	601
BmgT120I	GGNCC	1 cut(s)	249
BmiI	GGNNCC	6 cut(s)	52, 211, 320, 593, 688, 762
BmrFI	CCNGG	2 cut(s)	658, 684
BmrI	ACTGGG	1 cut(s)	467
BmuI	ACTGGG	1 cut(s)	467
BpuEI	CTTGAG	1 cut(s)	369
BpuMI	CCSGG	1 cut(s)	658
BsaI	GGTCTC	2 cut(s)	271, 289
BsaWI	WCCGGW	4 cut(s)	280, 403, 689, 763
BsaXI	ACNNNNNCTCC	2 cut(s)	55, 85
Bsc4I	CCNNNNNNNGG	3 cut(s)	350, 601, 689
Bse118I	RCCGGY	2 cut(s)	280, 403
Bse1I	ACTGG	1 cut(s)	462
Bse3DI	GCAATG	1 cut(s)	557
BseBI	CCWGG	1 cut(s)	684
BseGI	GGATG	1 cut(s)	772
BseLI	CCNNNNNNNGG	3 cut(s)	350, 601, 689
BseMI	GCAATG	1 cut(s)	557
BseMII	CTCAG	4 cut(s)	77, 104, 245, 337
BseNI	ACTGG	1 cut(s)	462
BseRI	GAGGAG	4 cut(s)	60, 202, 212, 219
BseXI	GCAGC	3 cut(s)	177, 345, 348
Bsh1236I	CGCG	2 cut(s)	135, 597
BshFI	GGCC	1 cut(s)	656
BshNI	GGYRCC	2 cut(s)	591, 686
BshTI	ACCGGT	2 cut(s)	280, 403
BsiSI	CCGG	7 cut(s)	57, 281, 316, 404, 657, 690, 764
BslI	CCNNNNNNNGG	3 cut(s)	350, 601, 689
BsmAI	GTCTC	2 cut(s)	271, 289
BsnI	GGCC	1 cut(s)	656
Bso31I	GGTCTC	2 cut(s)	271, 289
Bsp1407I	TGTACA	1 cut(s)	785
Bsp143I	GATC	4 cut(s)	50, 89, 209, 526
BspACI	CCGC	6 cut(s)	54, 207, 216, 238, 595, 675
BspANI	GGCC	1 cut(s)	656
BspCNI	CTCAG	4 cut(s)	78, 105, 244, 336
BspFNI	CGCG	2 cut(s)	135, 597
BspLI	GGNNCC	6 cut(s)	52, 211, 320, 593, 688, 762
BspPI	GGATC	5 cut(s)	45, 58, 84, 204, 217
BspT107I	GGYRCC	2 cut(s)	591, 686
BspTNI	GGTCTC	2 cut(s)	271, 289
BsrDI	GCAATG	1 cut(s)	557
BsrFI	RCCGGY	2 cut(s)	280, 403
BsrGI	TGTACA	1 cut(s)	785
BsrI	ACTGG	1 cut(s)	462
BssAI	RCCGGY	2 cut(s)	280, 403
BssMI	GATC	4 cut(s)	50, 89, 209, 526
Bst2UI	CCWGG	1 cut(s)	684
Bst4CI	ACNGT	2 cut(s)	574, 785
Bst6I	CTCTTC	1 cut(s)	605
BstAPI	GCANNNNNTGC	1 cut(s)	636
BstAUI	TGTACA	1 cut(s)	785
BstC8I	GCNNGC	4 cut(s)	131, 313, 331, 440
BstDEI	CTNAG	4 cut(s)	86, 113, 231, 323
BstF5I	GGATG	1 cut(s)	772
BstFNI	CGCG	2 cut(s)	135, 597
BstHHI	GCGC	1 cut(s)	135
BstKTI	GATC	4 cut(s)	53, 92, 212, 529
BstMAI	GTCTC	2 cut(s)	271, 289
BstMBI	GATC	4 cut(s)	50, 89, 209, 526
BstMWI	GCNNNNNNNGC	4 cut(s)	109, 213, 271, 636
BstNI	CCWGG	1 cut(s)	684
BstSCI	CCNGG	2 cut(s)	656, 682
BstSFI	CTRYAG	2 cut(s)	570, 582
BstUI	CGCG	2 cut(s)	135, 597
BstV1I	GCAGC	3 cut(s)	177, 345, 348
BstX2I	RGATCY	3 cut(s)	50, 89, 209
BstYI	RGATCY	3 cut(s)	50, 89, 209
BsuRI	GGCC	1 cut(s)	656
BtgZI	GCGATG	1 cut(s)	774
BtrI	CACGTC	1 cut(s)	601
BtsCI	GGATG	1 cut(s)	772
BtsIMutI	CAGTG	1 cut(s)	331
Cac8I	GCNNGC	4 cut(s)	131, 313, 331, 440
CfoI	GCGC	1 cut(s)	135
Cfr10I	RCCGGY	2 cut(s)	280, 403
Cfr13I	GGNCC	1 cut(s)	249
CseI	GACGC	2 cut(s)	13, 124
Csp6I	GTAC	2 cut(s)	687, 786
CspAI	ACCGGT	2 cut(s)	280, 403
CspCI	CAANNNNNGTGG	2 cut(s)	568, 603
CviAII	CATG	2 cut(s)	193, 636
CviJI	RGCY	9 cut(s)	85, 112, 274, 382, 389, 442, 506, 656, 823
CviKI_1	RGCY	9 cut(s)	85, 112, 274, 382, 389, 442, 506, 656, 823
CviQI	GTAC	2 cut(s)	687, 786
DdeI	CTNAG	4 cut(s)	86, 113, 231, 323
DpnI	GATC	4 cut(s)	52, 91, 211, 528
DpnII	GATC	4 cut(s)	50, 89, 209, 526
DraI	TTTAAA	2 cut(s)	304, 450
Eam1104I	CTCTTC	1 cut(s)	605
EarI	CTCTTC	1 cut(s)	605
EciI	GGCGGA	2 cut(s)	43, 222
Eco31I	GGTCTC	2 cut(s)	271, 289
Eco47I	GGWCC	1 cut(s)	249
EcoRII	CCWGG	1 cut(s)	682
EcoT22I	ATGCAT	1 cut(s)	641
FaeI	CATG	2 cut(s)	196, 639
FaiI	YATR	9 cut(s)	194, 416, 584, 637, 641, 667, 669, 673, 707
FatI	CATG	2 cut(s)	192, 635
FauI	CCCGC	1 cut(s)	668
FblI	GTMKAC	1 cut(s)	569
Fnu4HI	GCNGC	4 cut(s)	166, 334, 337, 595
FokI	GGATG	1 cut(s)	779
Fsp4HI	GCNGC	4 cut(s)	166, 334, 337, 595
GlaI	GCGC	1 cut(s)	134
GluI	GCNGC	4 cut(s)	166, 334, 337, 595
HaeIII	GGCC	1 cut(s)	656
HapII	CCGG	7 cut(s)	57, 281, 316, 404, 657, 690, 764
HgaI	GACGC	2 cut(s)	13, 124
HhaI	GCGC	1 cut(s)	135
Hin1II	CATG	2 cut(s)	196, 639
Hin6I	GCGC	1 cut(s)	133
HinP1I	GCGC	1 cut(s)	133
HinfI	GANTC	6 cut(s)	35, 115, 179, 226, 254, 427
HpaII	CCGG	7 cut(s)	57, 281, 316, 404, 657, 690, 764
HphI	GGTGA	4 cut(s)	133, 230, 742, 808
Hpy166II	GTNNAC	1 cut(s)	570
Hpy188I	TCNGA	8 cut(s)	50, 75, 140, 184, 234, 253, 375, 808
Hpy188III	TCNNGA	2 cut(s)	530, 758
Hpy8I	GTNNAC	1 cut(s)	570
Hpy99I	CGWCG	8 cut(s)	29, 50, 103, 140, 262, 265, 292, 602
HpyAV	CCTTC	3 cut(s)	15, 544, 646
HpyCH4III	ACNGT	2 cut(s)	574, 785
HpyCH4IV	ACGT	1 cut(s)	600
HpyCH4V	TGCA	8 cut(s)	129, 155, 333, 347, 396, 562, 630, 639
HpyF10VI	GCNNNNNNNGC	4 cut(s)	109, 213, 271, 636
HpyF3I	CTNAG	4 cut(s)	86, 113, 231, 323
HpySE526I	ACGT	1 cut(s)	600
Hsp92II	CATG	2 cut(s)	196, 639
HspAI	GCGC	1 cut(s)	133
KpnI	GGTACC	1 cut(s)	690
Kzo9I	GATC	4 cut(s)	50, 89, 209, 526
LmnI	GCTCC	3 cut(s)	189, 532, 604
Lsp1109I	GCAGC	3 cut(s)	177, 345, 348
MaeII	ACGT	1 cut(s)	600
MaeIII	GTNAC	1 cut(s)	61
MalI	GATC	4 cut(s)	52, 91, 211, 528
MboI	GATC	4 cut(s)	50, 89, 209, 526
MboII	GAAGA	2 cut(s)	138, 622
MflI	RGATCY	3 cut(s)	50, 89, 209
MlyI	GAGTC	2 cut(s)	124, 220
MmeI	TCCRAC	4 cut(s)	28, 63, 118, 753
Mph1103I	ATGCAT	1 cut(s)	641
MroXI	GAANNNNTTC	2 cut(s)	145, 365
MseI	TTAA	3 cut(s)	303, 449, 464
MspA1I	CMGCKG	1 cut(s)	216
MspI	CCGG	7 cut(s)	57, 281, 316, 404, 657, 690, 764
MspR9I	CCNGG	2 cut(s)	658, 684
MssI	GTTTAAAC	1 cut(s)	450
MvaI	CCWGG	1 cut(s)	684
MvnI	CGCG	2 cut(s)	135, 597
MwoI	GCNNNNNNNGC	4 cut(s)	109, 213, 271, 636
NciI	CCSGG	1 cut(s)	658
NdeII	GATC	4 cut(s)	50, 89, 209, 526
NlaIII	CATG	2 cut(s)	196, 639
NlaIV	GGNNCC	6 cut(s)	52, 211, 320, 593, 688, 762
NmeAIII	GCCGAG	1 cut(s)	300
NsiI	ATGCAT	1 cut(s)	641
PcsI	WCGNNNNNNNCGW	1 cut(s)	263
PdmI	GAANNNNTTC	2 cut(s)	145, 365
PfeI	GAWTC	4 cut(s)	35, 179, 254, 427
PinAI	ACCGGT	2 cut(s)	280, 403
PkrI	GCNGC	4 cut(s)	167, 335, 338, 596
PleI	GAGTC	2 cut(s)	123, 220
PmeI	GTTTAAAC	1 cut(s)	450
PpsI	GAGTC	2 cut(s)	123, 220
Psp6I	CCWGG	1 cut(s)	682
PspGI	CCWGG	1 cut(s)	682
PspN4I	GGNNCC	6 cut(s)	52, 211, 320, 593, 688, 762
PspPI	GGNCC	1 cut(s)	249
PsuI	RGATCY	3 cut(s)	50, 89, 209
RsaI	GTAC	2 cut(s)	688, 787
RsaNI	GTAC	2 cut(s)	687, 786
SaqAI	TTAA	3 cut(s)	303, 449, 464
SatI	GCNGC	4 cut(s)	166, 334, 337, 595
Sau3AI	GATC	4 cut(s)	50, 89, 209, 526
Sau96I	GGNCC	1 cut(s)	249
SchI	GAGTC	2 cut(s)	124, 220
ScrFI	CCNGG	2 cut(s)	658, 684
SetI	ASST	7 cut(s)	114, 123, 204, 251, 324, 603, 825
SfcI	CTRYAG	2 cut(s)	570, 582
SinI	GGWCC	1 cut(s)	249
SmlI	CTYRAG	1 cut(s)	384
SmoI	CTYRAG	1 cut(s)	384
SsiI	CCGC	6 cut(s)	54, 207, 216, 238, 595, 675
StyD4I	CCNGG	2 cut(s)	656, 682
TaaI	ACNGT	2 cut(s)	574, 785
TaiI	ACGT	1 cut(s)	603
TaqI	TCGA	2 cut(s)	27, 33
TatI	WGTACW	1 cut(s)	785
TauI	GCSGC	1 cut(s)	597
TfiI	GAWTC	4 cut(s)	35, 179, 254, 427
Tru1I	TTAA	3 cut(s)	303, 449, 464
Tru9I	TTAA	3 cut(s)	303, 449, 464
TscAI	CASTG	1 cut(s)	331
TseI	GCWGC	3 cut(s)	165, 333, 336
TspDTI	ATGAA	3 cut(s)	122, 284, 311
TspGWI	ACGGA	2 cut(s)	94, 139
TspRI	CASTG	1 cut(s)	331
VpaK11BI	GGWCC	1 cut(s)	249
XapI	RAATTY	3 cut(s)	141, 466, 830
XmiI	GTMKAC	1 cut(s)	569
XmnI	GAANNNNTTC	2 cut(s)	145, 365
Zsp2I	ATGCAT	1 cut(s)	641

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.