Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002408

Physical Location & Seq

Genomic Coordinates Forward (+)

38029875 .. 38030114

Gene Structure 240 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00029450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGCCTTCCATCGCCGACCGCGGCGTCGAACACGAATCCAACACCGTTGGATCCGCCGGAGTTTCTCTTGCTCGAAACGGAGGCCGAGATCCCGATTCGTCGCCGATGAAGCCGAGTCCGGTGAAATGCAAGCGCGTTAGAATTTCTTCCGTCGCGAAATTACGCAGCGTTATGGTCGAATCGGAGAGGAGCGTGGAGGAGGTAGTCGGATCCCGCGGTGATTTGACTCCTCGAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0022402 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044786 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA_22 Cdc6_C

Protein Analysis

79

Amino Acids

8.38

Weight (kDa)

9.61

Isoelectric Point (pI)

65.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002408)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0117421 RchiOBHm_Chr2g0147571
rosa_laevigata	RLG00000009715 RLG00000036789
rosa_multiflora	Rmu_sc0005551.1_g000001 Rmu_sc0005551.1_g000002 Rmu_sc0006255.1_g000001 Rmu_sc0006255.1_g000006 Rmu_sc0006255.1_g000008 Rmu_sc0006368.1_g000001 Rmu_sc0008753.1_g000001 Rmu_sc0010335.1_g000001 Rmu_sc0010420.1_g000002 Rmu_sc0013459.1_g000003 Rmu_sc0029520.1_g000001 Rmu_sc0031364.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029450 Rroxscaffold_1G00029500 Rroxscaffold_1G00029570 Rroxscaffold_1G00029580 Rroxscaffold_1G00029590 Rroxscaffold_5G00379910 Rroxscaffold_7G00209950
rosa_rugosa	Rorug01G0060000 Rorug03G0369200.1 Rorug05G0426400 Rorug05G0426500 Rorug05G0426600
rosa_samantha	Rh1AG147300 Rh1BG061700 Rh1CG138600 Rh2BG280100 Rh2BG537700 Rh2CG258400 Rh2CG272200 Rh2DG275000 Rh2DG290600 Rh2DG294200 Rh2DG294400 Rh5BG473700 Rh7AG238100 Rh7CG254700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	23
AccII	CGCG	4 cut(s)	21, 135, 155, 216
AciI	CCGC	5 cut(s)	19, 21, 54, 214, 216
AclWI	GGATC	5 cut(s)	45, 58, 83, 204, 217
AcsI	RAATTY	1 cut(s)	141
AcyI	GRCGYC	1 cut(s)	24
AluBI	AGCT	1 cut(s)	237
AluI	AGCT	1 cut(s)	237
AlwI	GGATC	5 cut(s)	45, 58, 83, 204, 217
AoxI	GGCC	1 cut(s)	82
ApeKI	GCWGC	1 cut(s)	165
ApoI	RAATTY	1 cut(s)	141
Asp700I	GAANNNNTTC	1 cut(s)	145
AspLEI	GCGC	1 cut(s)	135
AsuHPI	GGTGA	2 cut(s)	133, 230
BamHI	GGATCC	2 cut(s)	50, 209
BbvI	GCAGC	1 cut(s)	177
BccI	CCATC	1 cut(s)	17
BisI	GCNGC	2 cut(s)	22, 166
BlsI	GCNGC	2 cut(s)	23, 167
BmiI	GGNNCC	2 cut(s)	52, 211
BsaHI	GRCGYC	1 cut(s)	24
BsaJI	CCNNGG	2 cut(s)	19, 214
BsaWI	WCCGGW	1 cut(s)	118
BseDI	CCNNGG	2 cut(s)	19, 214
BseRI	GAGGAG	3 cut(s)	202, 212, 219
BseXI	GCAGC	1 cut(s)	177
Bsh1236I	CGCG	4 cut(s)	21, 135, 155, 216
Bsh1285I	CGRYCG	1 cut(s)	19
BshFI	GGCC	1 cut(s)	84
BsiEI	CGRYCG	1 cut(s)	19
BsiSI	CCGG	2 cut(s)	57, 119
BsnI	GGCC	1 cut(s)	84
Bsp143I	GATC	3 cut(s)	50, 88, 209
Bsp68I	TCGCGA	1 cut(s)	155
BspACI	CCGC	5 cut(s)	19, 21, 54, 214, 216
BspANI	GGCC	1 cut(s)	84
BspFNI	CGCG	4 cut(s)	21, 135, 155, 216
BspLI	GGNNCC	2 cut(s)	52, 211
BspPI	GGATC	5 cut(s)	45, 58, 83, 204, 217
BssECI	CCNNGG	2 cut(s)	19, 214
BssMI	GATC	3 cut(s)	50, 88, 209
BssNI	GRCGYC	1 cut(s)	24
Bst4CI	ACNGT	1 cut(s)	46
BstACI	GRCGYC	1 cut(s)	24
BstC8I	GCNNGC	1 cut(s)	131
BstDSI	CCRYGG	2 cut(s)	19, 214
BstFNI	CGCG	4 cut(s)	21, 135, 155, 216
BstHHI	GCGC	1 cut(s)	135
BstKTI	GATC	3 cut(s)	53, 91, 212
BstMBI	GATC	3 cut(s)	50, 88, 209
BstMCI	CGRYCG	1 cut(s)	19
BstMWI	GCNNNNNNNGC	1 cut(s)	109
BstUI	CGCG	4 cut(s)	21, 135, 155, 216
BstV1I	GCAGC	1 cut(s)	177
BstX2I	RGATCY	3 cut(s)	50, 88, 209
BstYI	RGATCY	3 cut(s)	50, 88, 209
BsuRI	GGCC	1 cut(s)	84
BtgI	CCRYGG	2 cut(s)	19, 214
BtuMI	TCGCGA	1 cut(s)	155
Cac8I	GCNNGC	1 cut(s)	131
CfoI	GCGC	1 cut(s)	135
Cfr42I	CCGCGG	2 cut(s)	22, 217
CseI	GACGC	1 cut(s)	13
CviJI	RGCY	3 cut(s)	84, 112, 237
CviKI_1	RGCY	3 cut(s)	84, 112, 237
DpnI	GATC	3 cut(s)	52, 90, 211
DpnII	GATC	3 cut(s)	50, 88, 209
DrdI	GACNNNNNNGTC	1 cut(s)	23
DseDI	GACNNNNNNGTC	1 cut(s)	23
EciI	GGCGGA	1 cut(s)	43
FaiI	YATR	1 cut(s)	173
FauI	CCCGC	1 cut(s)	221
Fnu4HI	GCNGC	2 cut(s)	22, 166
Fsp4HI	GCNGC	2 cut(s)	22, 166
GlaI	GCGC	1 cut(s)	134
GluI	GCNGC	2 cut(s)	22, 166
HaeIII	GGCC	1 cut(s)	84
HapII	CCGG	2 cut(s)	57, 119
HgaI	GACGC	1 cut(s)	13
HhaI	GCGC	1 cut(s)	135
Hin1I	GRCGYC	1 cut(s)	24
Hin6I	GCGC	1 cut(s)	133
HinP1I	GCGC	1 cut(s)	133
HinfI	GANTC	5 cut(s)	35, 95, 115, 179, 226
HpaII	CCGG	2 cut(s)	57, 119
HphI	GGTGA	2 cut(s)	133, 230
Hpy188I	TCNGA	2 cut(s)	184, 209
Hpy188III	TCNNGA	2 cut(s)	92, 154
Hpy99I	CGWCG	3 cut(s)	29, 103, 155
HpyAV	CCTTC	1 cut(s)	15
HpyCH4III	ACNGT	1 cut(s)	46
HpyCH4V	TGCA	1 cut(s)	129
HpyF10VI	GCNNNNNNNGC	1 cut(s)	109
Hsp92I	GRCGYC	1 cut(s)	24
HspAI	GCGC	1 cut(s)	133
KspI	CCGCGG	2 cut(s)	22, 217
Kzo9I	GATC	3 cut(s)	50, 88, 209
LmnI	GCTCC	1 cut(s)	189
LpnPI	CCDG	2 cut(s)	70, 132
Lsp1109I	GCAGC	1 cut(s)	177
MalI	GATC	3 cut(s)	52, 90, 211
MboI	GATC	3 cut(s)	50, 88, 209
MboII	GAAGA	1 cut(s)	138
MflI	RGATCY	3 cut(s)	50, 88, 209
MluCI	AATT	2 cut(s)	141, 158
MlyI	GAGTC	2 cut(s)	124, 220
MmeI	TCCRAC	3 cut(s)	28, 63, 187
MnlI	CCTC	5 cut(s)	74, 180, 190, 193, 240
MroXI	GAANNNNTTC	1 cut(s)	145
MspA1I	CMGCKG	2 cut(s)	21, 216
MspI	CCGG	2 cut(s)	57, 119
MvnI	CGCG	4 cut(s)	21, 135, 155, 216
MwoI	GCNNNNNNNGC	1 cut(s)	109
NdeII	GATC	3 cut(s)	50, 88, 209
NlaIV	GGNNCC	2 cut(s)	52, 211
NmeAIII	GCCGAG	2 cut(s)	110, 138
NruI	TCGCGA	1 cut(s)	155
PdmI	GAANNNNTTC	1 cut(s)	145
PfeI	GAWTC	3 cut(s)	35, 95, 179
PkrI	GCNGC	2 cut(s)	23, 167
PleI	GAGTC	2 cut(s)	123, 220
PpsI	GAGTC	2 cut(s)	123, 220
PspN4I	GGNNCC	2 cut(s)	52, 211
PsuI	RGATCY	3 cut(s)	50, 88, 209
RruI	TCGCGA	1 cut(s)	155
SacII	CCGCGG	2 cut(s)	22, 217
SatI	GCNGC	2 cut(s)	22, 166
Sau3AI	GATC	3 cut(s)	50, 88, 209
SchI	GAGTC	2 cut(s)	124, 220
SetI	ASST	2 cut(s)	204, 239
Sfr303I	CCGCGG	2 cut(s)	22, 217
SgrBI	CCGCGG	2 cut(s)	22, 217
Sse9I	AATT	2 cut(s)	141, 158
SsiI	CCGC	5 cut(s)	19, 21, 54, 214, 216
TaaI	ACNGT	1 cut(s)	46
TaqI	TCGA	4 cut(s)	27, 73, 177, 232
TasI	AATT	2 cut(s)	141, 158
TauI	GCSGC	1 cut(s)	24
TfiI	GAWTC	3 cut(s)	35, 95, 179
TseI	GCWGC	1 cut(s)	165
TspDTI	ATGAA	1 cut(s)	122
TspGWI	ACGGA	2 cut(s)	93, 139
XapI	RAATTY	1 cut(s)	141
XmnI	GAANNNNTTC	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.