Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0002408

Physical Location & Seq

Genomic Coordinates Forward (+)

29766204 .. 29766782

Gene Structure 579 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG272200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGAATGGCGGTTGCGCTAATACTCCTCAGAAGCGGAAGTTAAGGTCGGATTCGTCGTCGCCGAGACCGGTCTCATCACCGATGAAGCGTAAATTGGCTCGCCGGAACCTCAGTGCTTGCATCAATACTCCTGCAAATGGAATTGAGAAGTATTTCAGTCAGAAAAAGCCTCAAGCCTATTGCAAACCACCAGTTGTTGTTATGCCGAACTGGAATCCCAGAGATAAGGAGCAGATGAGGATAGTGAAGGAGGCATTGCACTTGTCTAAGGTTCCCTCTAGTGTTGCGTGCCGCGACGTGGAGCAGAAGGTTCTGGAGTTCTGCAAGTCATACATAGAGCAAGAGAAGGCTCATGGATACAGTTTTGGATTAGGTAGAAACTCATTTGTTGATATTTGTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0022402 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044786 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA_22 Cdc6_C

Protein Analysis

134

Amino Acids

15.15

Weight (kDa)

9.78

Isoelectric Point (pI)

64.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002408)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0117421 RchiOBHm_Chr2g0147571
rosa_laevigata	RLG00000009715 RLG00000036789
rosa_multiflora	Rmu_sc0005551.1_g000001 Rmu_sc0005551.1_g000002 Rmu_sc0006255.1_g000001 Rmu_sc0006255.1_g000006 Rmu_sc0006255.1_g000008 Rmu_sc0006368.1_g000001 Rmu_sc0008753.1_g000001 Rmu_sc0010335.1_g000001 Rmu_sc0010420.1_g000002 Rmu_sc0013459.1_g000003 Rmu_sc0029520.1_g000001 Rmu_sc0031364.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029450 Rroxscaffold_1G00029500 Rroxscaffold_1G00029570 Rroxscaffold_1G00029580 Rroxscaffold_1G00029590 Rroxscaffold_5G00379910 Rroxscaffold_7G00209950
rosa_rugosa	Rorug01G0060000 Rorug03G0369200.1 Rorug05G0426400 Rorug05G0426500 Rorug05G0426600
rosa_samantha	Rh1AG147300 Rh1BG061700 Rh1CG138600 Rh2BG280100 Rh2BG537700 Rh2CG258400 Rh2CG272200 Rh2DG275000 Rh2DG290600 Rh2DG294200 Rh2DG294400 Rh5BG473700 Rh7AG238100 Rh7CG254700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	294
AciI	CCGC	3 cut(s)	9, 34, 292
AfiI	CCNNNNNNNGG	2 cut(s)	137, 298
AgeI	ACCGGT	1 cut(s)	67
AjiI	CACGTC	1 cut(s)	298
AjuI	GAANNNNNNNTTGG	2 cut(s)	77, 109
Alw26I	GTCTC	2 cut(s)	58, 76
AsiGI	ACCGGT	1 cut(s)	67
Asp700I	GAANNNNTTC	1 cut(s)	152
AspLEI	GCGC	1 cut(s)	17
AsuHPI	GGTGA	1 cut(s)	69
BciVI	GTATCC	1 cut(s)	350
BcoDI	GTCTC	2 cut(s)	58, 76
BfaI	CTAG	1 cut(s)	279
BfuI	GTATCC	1 cut(s)	350
BisI	GCNGC	1 cut(s)	292
BlsI	GCNGC	1 cut(s)	293
BmgBI	CACGTC	1 cut(s)	298
BmiI	GGNNCC	2 cut(s)	107, 273
BmsI	GCATC	1 cut(s)	129
BpmI	CTGGAG	1 cut(s)	335
BpuEI	CTTGAG	1 cut(s)	156
BsaI	GGTCTC	2 cut(s)	58, 76
BsaWI	WCCGGW	1 cut(s)	67
Bsc4I	CCNNNNNNNGG	2 cut(s)	137, 298
Bse118I	RCCGGY	1 cut(s)	67
Bse1I	ACTGG	2 cut(s)	191, 215
Bse3DI	GCAATG	1 cut(s)	254
BseLI	CCNNNNNNNGG	2 cut(s)	137, 298
BseMI	GCAATG	1 cut(s)	254
BseMII	CTCAG	2 cut(s)	41, 124
BseNI	ACTGG	2 cut(s)	191, 215
BseRI	GAGGAG	1 cut(s)	15
Bsh1236I	CGCG	1 cut(s)	294
BshTI	ACCGGT	1 cut(s)	67
BsiSI	CCGG	2 cut(s)	68, 103
BslI	CCNNNNNNNGG	2 cut(s)	137, 298
BsmAI	GTCTC	2 cut(s)	58, 76
Bso31I	GGTCTC	2 cut(s)	58, 76
BspACI	CCGC	3 cut(s)	9, 34, 292
BspCNI	CTCAG	2 cut(s)	40, 123
BspFNI	CGCG	1 cut(s)	294
BspLI	GGNNCC	2 cut(s)	107, 273
BspTNI	GGTCTC	2 cut(s)	58, 76
BsrDI	GCAATG	1 cut(s)	254
BsrFI	RCCGGY	1 cut(s)	67
BsrI	ACTGG	2 cut(s)	191, 215
BssAI	RCCGGY	1 cut(s)	67
Bst4CI	ACNGT	1 cut(s)	362
BstC8I	GCNNGC	3 cut(s)	100, 118, 289
BstDEI	CTNAG	3 cut(s)	27, 110, 267
BstFNI	CGCG	1 cut(s)	294
BstHHI	GCGC	1 cut(s)	17
BstMAI	GTCTC	2 cut(s)	58, 76
BstUI	CGCG	1 cut(s)	294
BsuI	GTATCC	1 cut(s)	350
BtrI	CACGTC	1 cut(s)	298
BtsIMutI	CAGTG	1 cut(s)	118
Cac8I	GCNNGC	3 cut(s)	100, 118, 289
CfoI	GCGC	1 cut(s)	17
Cfr10I	RCCGGY	1 cut(s)	67
CspAI	ACCGGT	1 cut(s)	67
CviAII	CATG	1 cut(s)	353
CviJI	RGCY	4 cut(s)	98, 169, 176, 350
CviKI_1	RGCY	4 cut(s)	98, 169, 176, 350
DdeI	CTNAG	3 cut(s)	27, 110, 267
Eco31I	GGTCTC	2 cut(s)	58, 76
FaeI	CATG	1 cut(s)	356
FaiI	YATR	4 cut(s)	203, 331, 335, 354
FatI	CATG	1 cut(s)	352
Fnu4HI	GCNGC	1 cut(s)	292
Fsp4HI	GCNGC	1 cut(s)	292
FspBI	CTAG	1 cut(s)	279
GlaI	GCGC	1 cut(s)	16
GluI	GCNGC	1 cut(s)	292
GsuI	CTGGAG	1 cut(s)	335
HapII	CCGG	2 cut(s)	68, 103
HhaI	GCGC	1 cut(s)	17
Hin1II	CATG	1 cut(s)	356
Hin6I	GCGC	1 cut(s)	15
HinP1I	GCGC	1 cut(s)	15
HinfI	GANTC	2 cut(s)	50, 214
HpaII	CCGG	2 cut(s)	68, 103
HphI	GGTGA	1 cut(s)	69
Hpy188I	TCNGA	3 cut(s)	30, 49, 162
Hpy188III	TCNNGA	1 cut(s)	314
Hpy99I	CGWCG	3 cut(s)	58, 61, 299
HpyAV	CCTTC	3 cut(s)	241, 301, 340
HpyCH4III	ACNGT	1 cut(s)	362
HpyCH4IV	ACGT	1 cut(s)	297
HpyCH4V	TGCA	5 cut(s)	120, 134, 183, 259, 324
HpyF3I	CTNAG	3 cut(s)	27, 110, 267
HpySE526I	ACGT	1 cut(s)	297
Hsp92II	CATG	1 cut(s)	356
HspAI	GCGC	1 cut(s)	15
LmnI	GCTCC	2 cut(s)	229, 301
LpnPI	CCDG	7 cut(s)	81, 116, 144, 196, 204, 232, 299
LweI	GCATC	1 cut(s)	129
MaeI	CTAG	1 cut(s)	279
MaeII	ACGT	1 cut(s)	297
MluCI	AATT	2 cut(s)	92, 141
MmeI	TCCRAC	1 cut(s)	27
MnlI	CCTC	6 cut(s)	36, 119, 180, 231, 244, 286
MroXI	GAANNNNTTC	1 cut(s)	152
MseI	TTAA	1 cut(s)	41
MspI	CCGG	2 cut(s)	68, 103
MvnI	CGCG	1 cut(s)	294
NlaIII	CATG	1 cut(s)	356
NlaIV	GGNNCC	2 cut(s)	107, 273
NmeAIII	GCCGAG	1 cut(s)	87
PcsI	WCGNNNNNNNCGW	2 cut(s)	53, 59
PdmI	GAANNNNTTC	1 cut(s)	152
PfeI	GAWTC	2 cut(s)	50, 214
PinAI	ACCGGT	1 cut(s)	67
PkrI	GCNGC	1 cut(s)	293
PspN4I	GGNNCC	2 cut(s)	107, 273
SaqAI	TTAA	1 cut(s)	41
SatI	GCNGC	1 cut(s)	292
SetI	ASST	6 cut(s)	47, 111, 273, 300, 312, 376
SfaNI	GCATC	1 cut(s)	129
SmlI	CTYRAG	1 cut(s)	171
SmoI	CTYRAG	1 cut(s)	171
Sse9I	AATT	2 cut(s)	92, 141
SsiI	CCGC	3 cut(s)	9, 34, 292
SspMI	CTAG	1 cut(s)	279
TaaI	ACNGT	1 cut(s)	362
TaiI	ACGT	1 cut(s)	300
TasI	AATT	2 cut(s)	92, 141
TauI	GCSGC	1 cut(s)	294
TfiI	GAWTC	2 cut(s)	50, 214
Tru1I	TTAA	1 cut(s)	41
Tru9I	TTAA	1 cut(s)	41
TscAI	CASTG	1 cut(s)	118
TspDTI	ATGAA	2 cut(s)	17, 98
TspRI	CASTG	1 cut(s)	118
XmnI	GAANNNNTTC	1 cut(s)	152
XspI	CTAG	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.