Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006255.1

Orthogroup ID

OG0002408

Physical Location & Seq

Genomic Coordinates Forward (+)

17215 .. 17733

Gene Structure 519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006255.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

atgccttccatcgccgaccgcagcgtcgaactcgaatccaacgccgtcggatccgccggagtttctactcctctgaaacggaggctgagatccaattcgtcgccgatgaagctgagtccggtgaaatgcaagcgcgtcgaaatttcttccgtcgcgaaattacgcagcgttgtggtcgaatcggaggtagtcggatcgggcggtgatttgactcctcagaagcggaagttgaggtccgattcgtcgtccccgatgaagccgagaccggtctcgtcgccgatgaagtgtaatcggctcgccggaacctcagtgcttgcagcagcactcctgcaaatggaattgagaagtatttcagtccgaaaaagcctcaagccttttgcaaaccaccggttgttgctaagccgaattggaatcccagaggcaagccttgtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0022402 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044786 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA_22 Cdc6_C

Protein Analysis

144

Amino Acids

15.44

Weight (kDa)

11.15

Isoelectric Point (pI)

73.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002408)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0117421 RchiOBHm_Chr2g0147571
rosa_laevigata	RLG00000009715 RLG00000036789
rosa_multiflora	Rmu_sc0005551.1_g000001 Rmu_sc0005551.1_g000002 Rmu_sc0006255.1_g000001 Rmu_sc0006255.1_g000006 Rmu_sc0006255.1_g000008 Rmu_sc0006368.1_g000001 Rmu_sc0008753.1_g000001 Rmu_sc0010335.1_g000001 Rmu_sc0010420.1_g000002 Rmu_sc0013459.1_g000003 Rmu_sc0029520.1_g000001 Rmu_sc0031364.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029450 Rroxscaffold_1G00029500 Rroxscaffold_1G00029570 Rroxscaffold_1G00029580 Rroxscaffold_1G00029590 Rroxscaffold_5G00379910 Rroxscaffold_7G00209950
rosa_rugosa	Rorug01G0060000 Rorug03G0369200.1 Rorug05G0426400 Rorug05G0426500 Rorug05G0426600
rosa_samantha	Rh1AG147300 Rh1BG061700 Rh1CG138600 Rh2BG280100 Rh2BG537700 Rh2CG258400 Rh2CG272200 Rh2DG275000 Rh2DG290600 Rh2DG294200 Rh2DG294400 Rh5BG473700 Rh7AG238100 Rh7CG254700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	23
AccII	CGCG	2 cut(s)	135, 155
AciI	CCGC	4 cut(s)	19, 54, 201, 223
AclWI	GGATC	4 cut(s)	45, 58, 84, 202
AcsI	RAATTY	1 cut(s)	141
AfiI	CCNNNNNNNGG	1 cut(s)	334
AgeI	ACCGGT	2 cut(s)	265, 387
AluBI	AGCT	1 cut(s)	112
AluI	AGCT	1 cut(s)	112
Alw26I	GTCTC	2 cut(s)	256, 274
AlwI	GGATC	4 cut(s)	45, 58, 84, 202
ApeKI	GCWGC	4 cut(s)	21, 165, 317, 320
ApoI	RAATTY	1 cut(s)	141
AsiGI	ACCGGT	2 cut(s)	265, 387
Asp700I	GAANNNNTTC	1 cut(s)	349
AspLEI	GCGC	1 cut(s)	135
AspS9I	GGNCC	1 cut(s)	234
AsuHPI	GGTGA	2 cut(s)	133, 215
AvaII	GGWCC	1 cut(s)	234
BamHI	GGATCC	1 cut(s)	50
BbvI	GCAGC	4 cut(s)	33, 177, 329, 332
BccI	CCATC	1 cut(s)	17
BceAI	ACGGC	1 cut(s)	29
BcgI	CGANNNNNNTGC	2 cut(s)	118, 152
BcoDI	GTCTC	2 cut(s)	256, 274
BisI	GCNGC	4 cut(s)	22, 166, 318, 321
BlpI	GCTNAGC	1 cut(s)	398
BlsI	GCNGC	4 cut(s)	23, 167, 319, 322
Bme18I	GGWCC	1 cut(s)	234
BmgT120I	GGNCC	1 cut(s)	234
BmiI	GGNNCC	2 cut(s)	52, 304
Bpu1102I	GCTNAGC	1 cut(s)	398
BpuEI	CTTGAG	1 cut(s)	353
BsaI	GGTCTC	2 cut(s)	256, 274
BsaWI	WCCGGW	3 cut(s)	118, 265, 387
Bsc4I	CCNNNNNNNGG	1 cut(s)	334
Bse118I	RCCGGY	2 cut(s)	265, 387
BseLI	CCNNNNNNNGG	1 cut(s)	334
BseMII	CTCAG	4 cut(s)	77, 104, 230, 321
BseRI	GAGGAG	2 cut(s)	60, 204
BseXI	GCAGC	4 cut(s)	33, 177, 329, 332
Bsh1236I	CGCG	2 cut(s)	135, 155
Bsh1285I	CGRYCG	1 cut(s)	19
BshTI	ACCGGT	2 cut(s)	265, 387
BsiEI	CGRYCG	1 cut(s)	19
BsiSI	CCGG	5 cut(s)	57, 119, 266, 300, 388
BslFI	GGGAC	1 cut(s)	232
BslI	CCNNNNNNNGG	1 cut(s)	334
BsmAI	GTCTC	2 cut(s)	256, 274
BsmFI	GGGAC	1 cut(s)	232
Bso31I	GGTCTC	2 cut(s)	256, 274
Bsp143I	GATC	3 cut(s)	50, 89, 194
Bsp1720I	GCTNAGC	1 cut(s)	398
Bsp68I	TCGCGA	1 cut(s)	155
BspACI	CCGC	4 cut(s)	19, 54, 201, 223
BspCNI	CTCAG	4 cut(s)	78, 105, 229, 320
BspFNI	CGCG	2 cut(s)	135, 155
BspLI	GGNNCC	2 cut(s)	52, 304
BspPI	GGATC	4 cut(s)	45, 58, 84, 202
BspTNI	GGTCTC	2 cut(s)	256, 274
BsrFI	RCCGGY	2 cut(s)	265, 387
BssAI	RCCGGY	2 cut(s)	265, 387
BssMI	GATC	3 cut(s)	50, 89, 194
BstC8I	GCNNGC	4 cut(s)	131, 297, 315, 424
BstDEI	CTNAG	5 cut(s)	86, 113, 216, 307, 398
BstFNI	CGCG	2 cut(s)	135, 155
BstHHI	GCGC	1 cut(s)	135
BstKTI	GATC	3 cut(s)	53, 92, 197
BstMAI	GTCTC	2 cut(s)	256, 274
BstMBI	GATC	3 cut(s)	50, 89, 194
BstMCI	CGRYCG	1 cut(s)	19
BstMWI	GCNNNNNNNGC	1 cut(s)	109
BstUI	CGCG	2 cut(s)	135, 155
BstV1I	GCAGC	4 cut(s)	33, 177, 329, 332
BstX2I	RGATCY	2 cut(s)	50, 89
BstYI	RGATCY	2 cut(s)	50, 89
BtsIMutI	CAGTG	1 cut(s)	315
BtuMI	TCGCGA	1 cut(s)	155
Cac8I	GCNNGC	4 cut(s)	131, 297, 315, 424
CfoI	GCGC	1 cut(s)	135
Cfr10I	RCCGGY	2 cut(s)	265, 387
Cfr13I	GGNCC	1 cut(s)	234
CseI	GACGC	2 cut(s)	13, 124
CspAI	ACCGGT	2 cut(s)	265, 387
CviJI	RGCY	8 cut(s)	85, 112, 259, 295, 366, 373, 402, 426
CviKI_1	RGCY	8 cut(s)	85, 112, 259, 295, 366, 373, 402, 426
DdeI	CTNAG	5 cut(s)	86, 113, 216, 307, 398
DpnI	GATC	3 cut(s)	52, 91, 196
DpnII	GATC	3 cut(s)	50, 89, 194
DrdI	GACNNNNNNGTC	1 cut(s)	23
DseDI	GACNNNNNNGTC	1 cut(s)	23
EciI	GGCGGA	1 cut(s)	43
Eco31I	GGTCTC	2 cut(s)	256, 274
Eco47I	GGWCC	1 cut(s)	234
FaqI	GGGAC	1 cut(s)	232
Fnu4HI	GCNGC	4 cut(s)	22, 166, 318, 321
Fsp4HI	GCNGC	4 cut(s)	22, 166, 318, 321
GlaI	GCGC	1 cut(s)	134
GluI	GCNGC	4 cut(s)	22, 166, 318, 321
HapII	CCGG	5 cut(s)	57, 119, 266, 300, 388
HgaI	GACGC	2 cut(s)	13, 124
HhaI	GCGC	1 cut(s)	135
Hin6I	GCGC	1 cut(s)	133
HinP1I	GCGC	1 cut(s)	133
HinfI	GANTC	6 cut(s)	35, 115, 179, 211, 239, 411
HpaII	CCGG	5 cut(s)	57, 119, 266, 300, 388
HphI	GGTGA	2 cut(s)	133, 215
Hpy188I	TCNGA	7 cut(s)	50, 75, 184, 194, 219, 238, 359
Hpy188III	TCNNGA	1 cut(s)	154
Hpy99I	CGWCG	7 cut(s)	29, 50, 103, 140, 155, 247, 277
HpyAV	CCTTC	1 cut(s)	15
HpyCH4V	TGCA	4 cut(s)	129, 317, 331, 380
HpyF10VI	GCNNNNNNNGC	1 cut(s)	109
HpyF3I	CTNAG	5 cut(s)	86, 113, 216, 307, 398
HspAI	GCGC	1 cut(s)	133
Kzo9I	GATC	3 cut(s)	50, 89, 194
LpnPI	CCDG	7 cut(s)	70, 132, 279, 313, 341, 401, 429
Lsp1109I	GCAGC	4 cut(s)	33, 177, 329, 332
MalI	GATC	3 cut(s)	52, 91, 196
MboI	GATC	3 cut(s)	50, 89, 194
MboII	GAAGA	1 cut(s)	138
MflI	RGATCY	2 cut(s)	50, 89
MluCI	AATT	5 cut(s)	94, 141, 158, 338, 405
MlyI	GAGTC	2 cut(s)	124, 205
MmeI	TCCRAC	3 cut(s)	28, 63, 172
MnlI	CCTC	8 cut(s)	75, 81, 178, 225, 225, 316, 377, 412
MroXI	GAANNNNTTC	1 cut(s)	349
MseI	TTAA	1 cut(s)	433
MspI	CCGG	5 cut(s)	57, 119, 266, 300, 388
MvnI	CGCG	2 cut(s)	135, 155
MwoI	GCNNNNNNNGC	1 cut(s)	109
NdeII	GATC	3 cut(s)	50, 89, 194
NlaIV	GGNNCC	2 cut(s)	52, 304
NmeAIII	GCCGAG	1 cut(s)	285
NruI	TCGCGA	1 cut(s)	155
PcsI	WCGNNNNNNNCGW	1 cut(s)	248
PdmI	GAANNNNTTC	1 cut(s)	349
PfeI	GAWTC	4 cut(s)	35, 179, 239, 411
PinAI	ACCGGT	2 cut(s)	265, 387
PkrI	GCNGC	4 cut(s)	23, 167, 319, 322
PleI	GAGTC	2 cut(s)	123, 205
PpsI	GAGTC	2 cut(s)	123, 205
PspN4I	GGNNCC	2 cut(s)	52, 304
PspPI	GGNCC	1 cut(s)	234
PsuI	RGATCY	2 cut(s)	50, 89
RruI	TCGCGA	1 cut(s)	155
SaqAI	TTAA	1 cut(s)	433
SatI	GCNGC	4 cut(s)	22, 166, 318, 321
Sau3AI	GATC	3 cut(s)	50, 89, 194
Sau96I	GGNCC	1 cut(s)	234
SchI	GAGTC	2 cut(s)	124, 205
SetI	ASST	4 cut(s)	114, 189, 236, 308
SinI	GGWCC	1 cut(s)	234
SmlI	CTYRAG	1 cut(s)	368
SmoI	CTYRAG	1 cut(s)	368
Sse9I	AATT	5 cut(s)	94, 141, 158, 338, 405
SsiI	CCGC	4 cut(s)	19, 54, 201, 223
TaqI	TCGA	4 cut(s)	27, 33, 138, 177
TasI	AATT	5 cut(s)	94, 141, 158, 338, 405
TfiI	GAWTC	4 cut(s)	35, 179, 239, 411
Tru1I	TTAA	1 cut(s)	433
Tru9I	TTAA	1 cut(s)	433
TscAI	CASTG	1 cut(s)	315
TseI	GCWGC	4 cut(s)	21, 165, 317, 320
TspDTI	ATGAA	3 cut(s)	122, 269, 296
TspGWI	ACGGA	2 cut(s)	94, 139
TspRI	CASTG	1 cut(s)	315
VpaK11BI	GGWCC	1 cut(s)	234
XapI	RAATTY	1 cut(s)	141
XmnI	GAANNNNTTC	1 cut(s)	349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.