Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010335.1

Orthogroup ID

OG0002408

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1147

Gene Structure 1147 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010335.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

atgaagctgagtccggtgaaatgcaagcgcgtcggaatttcttccgtcgtgaaattactcagcgttatggtcgaatgggggaggagcgtggaggaggtagtcggatccggcggttatttgactcctcataagcggaagttgaggtttgattcgttgtcgccgatgaagccgtggccggtctcgtcgccgatgaagtataaggagatgatgaggatagtgaaggaggcattgcacttgtctacggttccctctacagttgcgtaccgcgacgtggagcaaaagagggttttggagttctgcaagtcatgcatagagcaagagaaggccgggagtttatatgtatgcgggtgtcctgggaccggaaagtccttgtccatggagaaagtgaaacaacttttggtgaattgggcaggagagggtggatttcaggaaccggatgtgttggaattgaactgtacatcgctaacaaaaacttctgatattttcaccaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0022402 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044786 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA_22 Cdc6_C

Protein Analysis

164

Amino Acids

18.28

Weight (kDa)

9.23

Isoelectric Point (pI)

42.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002408)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0117421 RchiOBHm_Chr2g0147571
rosa_laevigata	RLG00000009715 RLG00000036789
rosa_multiflora	Rmu_sc0005551.1_g000001 Rmu_sc0005551.1_g000002 Rmu_sc0006255.1_g000001 Rmu_sc0006255.1_g000006 Rmu_sc0006255.1_g000008 Rmu_sc0006368.1_g000001 Rmu_sc0008753.1_g000001 Rmu_sc0010335.1_g000001 Rmu_sc0010420.1_g000002 Rmu_sc0013459.1_g000003 Rmu_sc0029520.1_g000001 Rmu_sc0031364.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029450 Rroxscaffold_1G00029500 Rroxscaffold_1G00029570 Rroxscaffold_1G00029580 Rroxscaffold_1G00029590 Rroxscaffold_5G00379910 Rroxscaffold_7G00209950
rosa_rugosa	Rorug01G0060000 Rorug03G0369200.1 Rorug05G0426400 Rorug05G0426500 Rorug05G0426600
rosa_samantha	Rh1AG147300 Rh1BG061700 Rh1CG138600 Rh2BG280100 Rh2BG537700 Rh2CG258400 Rh2CG272200 Rh2DG275000 Rh2DG290600 Rh2DG294200 Rh2DG294400 Rh5BG473700 Rh7AG238100 Rh7CG254700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	364
AccI	GTMKAC	1 cut(s)	239
AccII	CGCG	2 cut(s)	30, 267
AciI	CCGC	4 cut(s)	111, 133, 265, 345
AclWI	GGATC	2 cut(s)	99, 112
AcoI	YGGCCR	1 cut(s)	173
AcsI	RAATTY	1 cut(s)	36
AfaI	GTAC	2 cut(s)	263, 457
AfiI	CCNNNNNNNGG	2 cut(s)	271, 359
AgsI	TTSAA	1 cut(s)	451
AjiI	CACGTC	1 cut(s)	271
AjnI	CCWGG	1 cut(s)	352
AjuI	GAANNNNNNNTTGG	2 cut(s)	380, 412
AluBI	AGCT	1 cut(s)	7
AluI	AGCT	1 cut(s)	7
Alw26I	GTCTC	1 cut(s)	184
AlwI	GGATC	2 cut(s)	99, 112
AoxI	GGCC	2 cut(s)	173, 324
ApoI	RAATTY	1 cut(s)	36
Asp700I	GAANNNNTTC	1 cut(s)	40
AspLEI	GCGC	1 cut(s)	30
AspS9I	GGNCC	1 cut(s)	357
AsuC2I	CCSGG	1 cut(s)	328
AsuHPI	GGTGA	3 cut(s)	28, 412, 478
AvaII	GGWCC	1 cut(s)	357
BamHI	GGATCC	1 cut(s)	104
BceAI	ACGGC	1 cut(s)	154
BcgI	CGANNNNNNTGC	2 cut(s)	13, 47
BciT130I	CCWGG	1 cut(s)	354
BcnI	CCSGG	1 cut(s)	328
BcoDI	GTCTC	1 cut(s)	184
BfmI	CTRYAG	1 cut(s)	252
Bme1390I	CCNGG	2 cut(s)	328, 354
Bme18I	GGWCC	1 cut(s)	357
BmgBI	CACGTC	1 cut(s)	271
BmgT120I	GGNCC	1 cut(s)	357
BmiI	GGNNCC	4 cut(s)	106, 246, 358, 432
BmrFI	CCNGG	2 cut(s)	328, 354
BpuMI	CCSGG	1 cut(s)	328
BsaI	GGTCTC	1 cut(s)	184
BsaJI	CCNNGG	3 cut(s)	170, 353, 375
BsaWI	WCCGGW	3 cut(s)	13, 359, 433
Bsc4I	CCNNNNNNNGG	2 cut(s)	271, 359
Bse118I	RCCGGY	1 cut(s)	175
Bse3DI	GCAATG	1 cut(s)	227
BseBI	CCWGG	1 cut(s)	354
BseDI	CCNNGG	3 cut(s)	170, 353, 375
BseGI	GGATG	1 cut(s)	442
BseLI	CCNNNNNNNGG	2 cut(s)	271, 359
BseMI	GCAATG	1 cut(s)	227
BseMII	CTCAG	1 cut(s)	73
BseRI	GAGGAG	3 cut(s)	97, 107, 114
Bsh1236I	CGCG	2 cut(s)	30, 267
BshFI	GGCC	2 cut(s)	175, 326
BsiSI	CCGG	6 cut(s)	14, 108, 176, 327, 360, 434
BslFI	GGGAC	1 cut(s)	370
BslI	CCNNNNNNNGG	2 cut(s)	271, 359
BsmAI	GTCTC	1 cut(s)	184
BsmFI	GGGAC	1 cut(s)	370
BsnI	GGCC	2 cut(s)	175, 326
Bso31I	GGTCTC	1 cut(s)	184
Bsp1407I	TGTACA	1 cut(s)	455
Bsp143I	GATC	1 cut(s)	104
Bsp19I	CCATGG	1 cut(s)	375
BspACI	CCGC	4 cut(s)	111, 133, 265, 345
BspANI	GGCC	2 cut(s)	175, 326
BspCNI	CTCAG	1 cut(s)	72
BspFNI	CGCG	2 cut(s)	30, 267
BspLI	GGNNCC	4 cut(s)	106, 246, 358, 432
BspPI	GGATC	2 cut(s)	99, 112
BspTNI	GGTCTC	1 cut(s)	184
BsrDI	GCAATG	1 cut(s)	227
BsrFI	RCCGGY	1 cut(s)	175
BsrGI	TGTACA	1 cut(s)	455
BssAI	RCCGGY	1 cut(s)	175
BssECI	CCNNGG	3 cut(s)	170, 353, 375
BssMI	GATC	1 cut(s)	104
BssT1I	CCWWGG	1 cut(s)	375
Bst2UI	CCWGG	1 cut(s)	354
Bst4CI	ACNGT	3 cut(s)	244, 256, 455
BstAPI	GCANNNNNTGC	1 cut(s)	306
BstAUI	TGTACA	1 cut(s)	455
BstC8I	GCNNGC	1 cut(s)	26
BstDEI	CTNAG	2 cut(s)	8, 59
BstDSI	CCRYGG	2 cut(s)	170, 375
BstF5I	GGATG	1 cut(s)	442
BstFNI	CGCG	2 cut(s)	30, 267
BstHHI	GCGC	1 cut(s)	30
BstKTI	GATC	1 cut(s)	107
BstMAI	GTCTC	1 cut(s)	184
BstMBI	GATC	1 cut(s)	104
BstMWI	GCNNNNNNNGC	2 cut(s)	166, 306
BstNI	CCWGG	1 cut(s)	354
BstSCI	CCNGG	2 cut(s)	326, 352
BstSFI	CTRYAG	1 cut(s)	252
BstUI	CGCG	2 cut(s)	30, 267
BstX2I	RGATCY	1 cut(s)	104
BstYI	RGATCY	1 cut(s)	104
BsuRI	GGCC	2 cut(s)	175, 326
BtgI	CCRYGG	2 cut(s)	170, 375
BtgZI	GCGATG	1 cut(s)	444
BtrI	CACGTC	1 cut(s)	271
BtsCI	GGATG	1 cut(s)	442
Cac8I	GCNNGC	1 cut(s)	26
CfoI	GCGC	1 cut(s)	30
Cfr10I	RCCGGY	1 cut(s)	175
Cfr13I	GGNCC	1 cut(s)	357
CseI	GACGC	1 cut(s)	19
Csp6I	GTAC	2 cut(s)	262, 456
CviAII	CATG	2 cut(s)	306, 376
CviJI	RGCY	4 cut(s)	7, 169, 175, 326
CviKI_1	RGCY	4 cut(s)	7, 169, 175, 326
CviQI	GTAC	2 cut(s)	262, 456
DdeI	CTNAG	2 cut(s)	8, 59
DpnI	GATC	1 cut(s)	106
DpnII	GATC	1 cut(s)	104
DrdI	GACNNNNNNGTC	1 cut(s)	364
DseDI	GACNNNNNNGTC	1 cut(s)	364
EaeI	YGGCCR	1 cut(s)	173
Eco130I	CCWWGG	1 cut(s)	375
Eco31I	GGTCTC	1 cut(s)	184
Eco47I	GGWCC	1 cut(s)	357
EcoRII	CCWGG	1 cut(s)	352
EcoT14I	CCWWGG	1 cut(s)	375
EcoT22I	ATGCAT	1 cut(s)	311
ErhI	CCWWGG	1 cut(s)	375
FaeI	CATG	2 cut(s)	309, 379
FaiI	YATR	9 cut(s)	68, 129, 198, 307, 311, 337, 339, 343, 377
FaqI	GGGAC	1 cut(s)	370
FatI	CATG	2 cut(s)	305, 375
FauI	CCCGC	1 cut(s)	338
FblI	GTMKAC	1 cut(s)	239
FokI	GGATG	1 cut(s)	449
GlaI	GCGC	1 cut(s)	29
HaeIII	GGCC	2 cut(s)	175, 326
HapII	CCGG	6 cut(s)	14, 108, 176, 327, 360, 434
HgaI	GACGC	1 cut(s)	19
HhaI	GCGC	1 cut(s)	30
Hin1II	CATG	2 cut(s)	309, 379
Hin6I	GCGC	1 cut(s)	28
HinP1I	GCGC	1 cut(s)	28
HinfI	GANTC	3 cut(s)	10, 121, 149
HpaII	CCGG	6 cut(s)	14, 108, 176, 327, 360, 434
HphI	GGTGA	3 cut(s)	28, 412, 478
Hpy166II	GTNNAC	1 cut(s)	240
Hpy188I	TCNGA	3 cut(s)	35, 104, 478
Hpy188III	TCNNGA	2 cut(s)	49, 428
Hpy8I	GTNNAC	1 cut(s)	240
Hpy99I	CGWCG	4 cut(s)	35, 50, 187, 272
HpyAV	CCTTC	2 cut(s)	214, 316
HpyCH4III	ACNGT	3 cut(s)	244, 256, 455
HpyCH4IV	ACGT	1 cut(s)	270
HpyCH4V	TGCA	4 cut(s)	24, 232, 300, 309
HpyF10VI	GCNNNNNNNGC	2 cut(s)	166, 306
HpyF3I	CTNAG	2 cut(s)	8, 59
HpySE526I	ACGT	1 cut(s)	270
Hsp92II	CATG	2 cut(s)	309, 379
HspAI	GCGC	1 cut(s)	28
Kzo9I	GATC	1 cut(s)	104
LmnI	GCTCC	2 cut(s)	84, 274
MaeII	ACGT	1 cut(s)	270
MalI	GATC	1 cut(s)	106
MboI	GATC	1 cut(s)	104
MboII	GAAGA	1 cut(s)	33
MflI	RGATCY	1 cut(s)	104
MluCI	AATT	4 cut(s)	36, 53, 403, 446
MlyI	GAGTC	2 cut(s)	19, 115
MmeI	TCCRAC	3 cut(s)	13, 82, 423
Mph1103I	ATGCAT	1 cut(s)	311
MroXI	GAANNNNTTC	1 cut(s)	40
MspI	CCGG	6 cut(s)	14, 108, 176, 327, 360, 434
MspR9I	CCNGG	2 cut(s)	328, 354
MvaI	CCWGG	1 cut(s)	354
MvnI	CGCG	2 cut(s)	30, 267
MwoI	GCNNNNNNNGC	2 cut(s)	166, 306
NciI	CCSGG	1 cut(s)	328
NcoI	CCATGG	1 cut(s)	375
NdeII	GATC	1 cut(s)	104
NlaIII	CATG	2 cut(s)	309, 379
NlaIV	GGNNCC	4 cut(s)	106, 246, 358, 432
NsiI	ATGCAT	1 cut(s)	311
PcsI	WCGNNNNNNNCGW	1 cut(s)	158
PdmI	GAANNNNTTC	1 cut(s)	40
PfeI	GAWTC	1 cut(s)	149
PleI	GAGTC	2 cut(s)	18, 115
PpsI	GAGTC	2 cut(s)	18, 115
Psp6I	CCWGG	1 cut(s)	352
PspGI	CCWGG	1 cut(s)	352
PspN4I	GGNNCC	4 cut(s)	106, 246, 358, 432
PspPI	GGNCC	1 cut(s)	357
PsuI	RGATCY	1 cut(s)	104
RsaI	GTAC	2 cut(s)	263, 457
RsaNI	GTAC	2 cut(s)	262, 456
Sau3AI	GATC	1 cut(s)	104
Sau96I	GGNCC	1 cut(s)	357
SchI	GAGTC	2 cut(s)	19, 115
ScrFI	CCNGG	2 cut(s)	328, 354
SetI	ASST	4 cut(s)	9, 99, 146, 273
SfcI	CTRYAG	1 cut(s)	252
SinI	GGWCC	1 cut(s)	357
Sse9I	AATT	4 cut(s)	36, 53, 403, 446
SsiI	CCGC	4 cut(s)	111, 133, 265, 345
StyD4I	CCNGG	2 cut(s)	326, 352
StyI	CCWWGG	1 cut(s)	375
TaaI	ACNGT	3 cut(s)	244, 256, 455
TaiI	ACGT	1 cut(s)	273
TaqI	TCGA	1 cut(s)	72
TasI	AATT	4 cut(s)	36, 53, 403, 446
TatI	WGTACW	1 cut(s)	455
TfiI	GAWTC	1 cut(s)	149
TspDTI	ATGAA	3 cut(s)	17, 179, 206
TspGWI	ACGGA	1 cut(s)	34
VpaK11BI	GGWCC	1 cut(s)	357
XapI	RAATTY	1 cut(s)	36
XmiI	GTMKAC	1 cut(s)	239
XmnI	GAANNNNTTC	1 cut(s)	40
Zsp2I	ATGCAT	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.