Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002408

Physical Location & Seq

Genomic Coordinates Forward (+)

38191506 .. 38192147

Gene Structure 642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00029580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGGAGGCCGAGATCCAATTCGTCGCCGATGAAGCCGAGTCCGGTGAAATGCAAGCGCGTTGGAATTTCTTCCGTCACGAAATTACGCAGCGTTGTGGTCGAATCGGAGAGGAGCGTGGAGGAGATAAGGAGCAGATGAGGATAGTGAAGGAGGCATTGCACTTGTCTACGGTTCCTACAGCTTGCGTGCCGCCACGTGGAGCGAAGAGGGTTTTGGAGTTCGCAAGTCATGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0022402 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044786 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA_22 Cdc6_C

Protein Analysis

78

Amino Acids

8.84

Weight (kDa)

5.89

Isoelectric Point (pI)

37.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002408)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0117421 RchiOBHm_Chr2g0147571
rosa_laevigata	RLG00000009715 RLG00000036789
rosa_multiflora	Rmu_sc0005551.1_g000001 Rmu_sc0005551.1_g000002 Rmu_sc0006255.1_g000001 Rmu_sc0006255.1_g000006 Rmu_sc0006255.1_g000008 Rmu_sc0006368.1_g000001 Rmu_sc0008753.1_g000001 Rmu_sc0010335.1_g000001 Rmu_sc0010420.1_g000002 Rmu_sc0013459.1_g000003 Rmu_sc0029520.1_g000001 Rmu_sc0031364.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029450 Rroxscaffold_1G00029500 Rroxscaffold_1G00029570 Rroxscaffold_1G00029580 Rroxscaffold_1G00029590 Rroxscaffold_5G00379910 Rroxscaffold_7G00209950
rosa_rugosa	Rorug01G0060000 Rorug03G0369200.1 Rorug05G0426400 Rorug05G0426500 Rorug05G0426600
rosa_samantha	Rh1AG147300 Rh1BG061700 Rh1CG138600 Rh2BG280100 Rh2BG537700 Rh2CG258400 Rh2CG272200 Rh2DG275000 Rh2DG290600 Rh2DG294200 Rh2DG294400 Rh5BG473700 Rh7AG238100 Rh7CG254700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	167
AccII	CGCG	1 cut(s)	58
AciI	CCGC	1 cut(s)	191
AclWI	GGATC	1 cut(s)	7
AcsI	RAATTY	1 cut(s)	64
AcvI	CACGTG	1 cut(s)	197
AfiI	CCNNNNNNNGG	1 cut(s)	197
AjuI	GAANNNNNNNTTGG	2 cut(s)	197, 229
AluBI	AGCT	1 cut(s)	182
AluI	AGCT	1 cut(s)	182
AlwI	GGATC	1 cut(s)	7
AoxI	GGCC	1 cut(s)	6
ApeKI	GCWGC	1 cut(s)	88
ApoI	RAATTY	1 cut(s)	64
Asp700I	GAANNNNTTC	1 cut(s)	68
AspLEI	GCGC	1 cut(s)	58
AsuHPI	GGTGA	1 cut(s)	56
BbrPI	CACGTG	1 cut(s)	197
BbvI	GCAGC	1 cut(s)	100
BfmI	CTRYAG	1 cut(s)	177
BisI	GCNGC	2 cut(s)	89, 191
BlsI	GCNGC	2 cut(s)	90, 192
BmiI	GGNNCC	1 cut(s)	174
BsaAI	YACGTR	1 cut(s)	197
BsaWI	WCCGGW	1 cut(s)	41
Bsc4I	CCNNNNNNNGG	1 cut(s)	197
Bse3DI	GCAATG	1 cut(s)	155
BseLI	CCNNNNNNNGG	1 cut(s)	197
BseMI	GCAATG	1 cut(s)	155
BseRI	GAGGAG	2 cut(s)	125, 135
BseXI	GCAGC	1 cut(s)	100
Bsh1236I	CGCG	1 cut(s)	58
BshFI	GGCC	1 cut(s)	8
BsiSI	CCGG	1 cut(s)	42
BslI	CCNNNNNNNGG	1 cut(s)	197
BsnI	GGCC	1 cut(s)	8
Bsp143I	GATC	1 cut(s)	12
BspACI	CCGC	1 cut(s)	191
BspANI	GGCC	1 cut(s)	8
BspFNI	CGCG	1 cut(s)	58
BspLI	GGNNCC	1 cut(s)	174
BspPI	GGATC	1 cut(s)	7
BsrDI	GCAATG	1 cut(s)	155
BssMI	GATC	1 cut(s)	12
Bst4CI	ACNGT	1 cut(s)	172
Bst6I	CTCTTC	1 cut(s)	200
BstAPI	GCANNNNNTGC	1 cut(s)	230
BstBAI	YACGTR	1 cut(s)	197
BstC8I	GCNNGC	3 cut(s)	54, 184, 188
BstFNI	CGCG	1 cut(s)	58
BstHHI	GCGC	1 cut(s)	58
BstKTI	GATC	1 cut(s)	15
BstMBI	GATC	1 cut(s)	12
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 230
BstSFI	CTRYAG	1 cut(s)	177
BstUI	CGCG	1 cut(s)	58
BstV1I	GCAGC	1 cut(s)	100
BstX2I	RGATCY	1 cut(s)	12
BstYI	RGATCY	1 cut(s)	12
BsuRI	GGCC	1 cut(s)	8
Cac8I	GCNNGC	3 cut(s)	54, 184, 188
CfoI	GCGC	1 cut(s)	58
CviAII	CATG	1 cut(s)	230
CviJI	RGCY	3 cut(s)	8, 35, 182
CviKI_1	RGCY	3 cut(s)	8, 35, 182
DpnI	GATC	1 cut(s)	14
DpnII	GATC	1 cut(s)	12
Eam1104I	CTCTTC	1 cut(s)	200
EarI	CTCTTC	1 cut(s)	200
Eco72I	CACGTG	1 cut(s)	197
EcoT22I	ATGCAT	1 cut(s)	235
FaeI	CATG	1 cut(s)	233
FaiI	YATR	2 cut(s)	231, 235
FatI	CATG	1 cut(s)	229
FblI	GTMKAC	1 cut(s)	167
Fnu4HI	GCNGC	2 cut(s)	89, 191
Fsp4HI	GCNGC	2 cut(s)	89, 191
GlaI	GCGC	1 cut(s)	57
GluI	GCNGC	2 cut(s)	89, 191
HaeIII	GGCC	1 cut(s)	8
HapII	CCGG	1 cut(s)	42
HhaI	GCGC	1 cut(s)	58
Hin1II	CATG	1 cut(s)	233
Hin6I	GCGC	1 cut(s)	56
HinP1I	GCGC	1 cut(s)	56
HinfI	GANTC	2 cut(s)	38, 102
HpaII	CCGG	1 cut(s)	42
HphI	GGTGA	1 cut(s)	56
Hpy166II	GTNNAC	1 cut(s)	168
Hpy188I	TCNGA	1 cut(s)	107
Hpy188III	TCNNGA	1 cut(s)	77
Hpy8I	GTNNAC	1 cut(s)	168
Hpy99I	CGWCG	1 cut(s)	26
HpyAV	CCTTC	1 cut(s)	142
HpyCH4III	ACNGT	1 cut(s)	172
HpyCH4IV	ACGT	1 cut(s)	196
HpyCH4V	TGCA	3 cut(s)	52, 160, 233
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 230
HpySE526I	ACGT	1 cut(s)	196
Hsp92II	CATG	1 cut(s)	233
HspAI	GCGC	1 cut(s)	56
Kzo9I	GATC	1 cut(s)	12
LmnI	GCTCC	3 cut(s)	112, 130, 200
LpnPI	CCDG	1 cut(s)	55
Lsp1109I	GCAGC	1 cut(s)	100
MaeII	ACGT	1 cut(s)	196
MaeIII	GTNAC	1 cut(s)	74
MalI	GATC	1 cut(s)	14
MboI	GATC	1 cut(s)	12
MboII	GAAGA	2 cut(s)	61, 217
MflI	RGATCY	1 cut(s)	12
MluCI	AATT	3 cut(s)	17, 64, 81
MlyI	GAGTC	1 cut(s)	47
MmeI	TCCRAC	1 cut(s)	41
MnlI	CCTC	5 cut(s)	103, 113, 132, 145, 201
Mph1103I	ATGCAT	1 cut(s)	235
MroXI	GAANNNNTTC	1 cut(s)	68
MspI	CCGG	1 cut(s)	42
MvnI	CGCG	1 cut(s)	58
MwoI	GCNNNNNNNGC	2 cut(s)	32, 230
NdeII	GATC	1 cut(s)	12
NlaIII	CATG	1 cut(s)	233
NlaIV	GGNNCC	1 cut(s)	174
NmeAIII	GCCGAG	2 cut(s)	34, 61
NmuCI	GTSAC	1 cut(s)	74
NsiI	ATGCAT	1 cut(s)	235
PdmI	GAANNNNTTC	1 cut(s)	68
PfeI	GAWTC	1 cut(s)	102
PkrI	GCNGC	2 cut(s)	90, 192
PleI	GAGTC	1 cut(s)	46
PmaCI	CACGTG	1 cut(s)	197
PmlI	CACGTG	1 cut(s)	197
PpsI	GAGTC	1 cut(s)	46
Ppu21I	YACGTR	1 cut(s)	197
PspCI	CACGTG	1 cut(s)	197
PspN4I	GGNNCC	1 cut(s)	174
PsuI	RGATCY	1 cut(s)	12
SatI	GCNGC	2 cut(s)	89, 191
Sau3AI	GATC	1 cut(s)	12
SchI	GAGTC	1 cut(s)	47
SetI	ASST	2 cut(s)	184, 199
SfcI	CTRYAG	1 cut(s)	177
Sse9I	AATT	3 cut(s)	17, 64, 81
SsiI	CCGC	1 cut(s)	191
TaaI	ACNGT	1 cut(s)	172
TaiI	ACGT	1 cut(s)	199
TaqI	TCGA	1 cut(s)	100
TasI	AATT	3 cut(s)	17, 64, 81
TauI	GCSGC	1 cut(s)	193
TfiI	GAWTC	1 cut(s)	102
TseFI	GTSAC	1 cut(s)	74
TseI	GCWGC	1 cut(s)	88
Tsp45I	GTSAC	1 cut(s)	74
TspDTI	ATGAA	1 cut(s)	45
TspGWI	ACGGA	1 cut(s)	62
XapI	RAATTY	1 cut(s)	64
XmiI	GTMKAC	1 cut(s)	167
XmnI	GAANNNNTTC	1 cut(s)	68
Zsp2I	ATGCAT	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.