Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0031364.1

Orthogroup ID

OG0002408

Physical Location & Seq

Genomic Coordinates Forward (+)

700 .. 2071

Gene Structure 1372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0031364.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

atgccttccatcaccgaccgcagcgtcgaactcgaatccaacgccgtcggatcagccggagtttctactcctccgaaacggaggctgagatccaattcgtcgccgatgaagctgagtccggtgaaatgcaagcacgtcggaatttcttccgtctcgaaattacgcagtgttgtggtcgaatcggagaggggcgtggaggaggtagtcggatcacacggtgatttgactcctcaaaagcggaagttgaggtccgattcgtcgtcgccgatgaagccaagaccggtctcgtcgccgatgaagtgtaaatcggctcgctggaacctcagtgcttgcagcagcactcctgcaaatgtgagatttggattggatacaaattgtgttgaacttgtaaataaggagcagatgaggatagtgaaggaggcattgcactcttctacggttccctctacagttgtgtaccgcgacgtggagcagaagggggttttggagttctgcaagtcatgcatagagcaagagaaggccgagagtttatatgtatgctggtgtcctgggaccggaatgtccttgtccatggagaaagtgaaacagcttttggtgaattgggcaggagagctagatatcatccaaacacttctttttgggaagctgacttgggggatgccccttccttcttctggaggagcattttacatggaagaccagttttgcattgatgttgcttttgggaagcgaccaatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0022402 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044786 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA_22 Cdc6_C

Protein Analysis

246

Amino Acids

26.98

Weight (kDa)

9.05

Isoelectric Point (pI)

63.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002408)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0117421 RchiOBHm_Chr2g0147571
rosa_laevigata	RLG00000009715 RLG00000036789
rosa_multiflora	Rmu_sc0005551.1_g000001 Rmu_sc0005551.1_g000002 Rmu_sc0006255.1_g000001 Rmu_sc0006255.1_g000006 Rmu_sc0006255.1_g000008 Rmu_sc0006368.1_g000001 Rmu_sc0008753.1_g000001 Rmu_sc0010335.1_g000001 Rmu_sc0010420.1_g000002 Rmu_sc0013459.1_g000003 Rmu_sc0029520.1_g000001 Rmu_sc0031364.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029450 Rroxscaffold_1G00029500 Rroxscaffold_1G00029570 Rroxscaffold_1G00029580 Rroxscaffold_1G00029590 Rroxscaffold_5G00379910 Rroxscaffold_7G00209950
rosa_rugosa	Rorug01G0060000 Rorug03G0369200.1 Rorug05G0426400 Rorug05G0426500 Rorug05G0426600
rosa_samantha	Rh1AG147300 Rh1BG061700 Rh1CG138600 Rh2BG280100 Rh2BG537700 Rh2CG258400 Rh2CG272200 Rh2DG275000 Rh2DG290600 Rh2DG294200 Rh2DG294400 Rh5BG473700 Rh7AG238100 Rh7CG254700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	23, 559
AccII	CGCG	1 cut(s)	462
AciI	CCGC	3 cut(s)	19, 238, 460
AclWI	GGATC	3 cut(s)	58, 84, 217
AcsI	RAATTY	1 cut(s)	141
AdeI	CACNNNGTG	1 cut(s)	218
AfaI	GTAC	1 cut(s)	458
AfiI	CCNNNNNNNGG	3 cut(s)	466, 554, 674
AgeI	ACCGGT	1 cut(s)	280
AgsI	TTSAA	1 cut(s)	383
AjiI	CACGTC	2 cut(s)	136, 466
AjnI	CCWGG	1 cut(s)	547
AjuI	GAANNNNNNNTTGG	4 cut(s)	467, 499, 575, 607
AluBI	AGCT	4 cut(s)	112, 589, 613, 646
AluI	AGCT	4 cut(s)	112, 589, 613, 646
Alw26I	GTCTC	2 cut(s)	157, 289
AlwI	GGATC	3 cut(s)	58, 84, 217
AoxI	GGCC	1 cut(s)	519
ApeKI	GCWGC	3 cut(s)	21, 333, 336
ApoI	RAATTY	1 cut(s)	141
AsiGI	ACCGGT	1 cut(s)	280
Asp700I	GAANNNNTTC	1 cut(s)	145
AspS9I	GGNCC	2 cut(s)	249, 552
AsuHPI	GGTGA	4 cut(s)	4, 133, 230, 607
AvaII	GGWCC	2 cut(s)	249, 552
BbsI	GAAGAC	1 cut(s)	702
BbvI	GCAGC	3 cut(s)	33, 345, 348
BccI	CCATC	1 cut(s)	17
BceAI	ACGGC	1 cut(s)	29
BcgI	CGANNNNNNTGC	2 cut(s)	118, 152
BciT130I	CCWGG	1 cut(s)	549
BciVI	GTATCC	1 cut(s)	361
BcoDI	GTCTC	2 cut(s)	157, 289
BfaI	CTAG	1 cut(s)	614
BfmI	CTRYAG	1 cut(s)	447
BfuI	GTATCC	1 cut(s)	361
BisI	GCNGC	3 cut(s)	22, 334, 337
BlsI	GCNGC	3 cut(s)	23, 335, 338
Bme1390I	CCNGG	1 cut(s)	549
Bme18I	GGWCC	2 cut(s)	249, 552
BmgBI	CACGTC	2 cut(s)	136, 466
BmgT120I	GGNCC	2 cut(s)	249, 552
BmiI	GGNNCC	3 cut(s)	320, 441, 553
BmrFI	CCNGG	1 cut(s)	549
BmsI	GCATC	1 cut(s)	648
BpiI	GAAGAC	1 cut(s)	702
BpmI	CTGGAG	1 cut(s)	696
BsaI	GGTCTC	1 cut(s)	289
BsaJI	CCNNGG	2 cut(s)	548, 570
BsaWI	WCCGGW	3 cut(s)	118, 280, 554
Bsc4I	CCNNNNNNNGG	3 cut(s)	466, 554, 674
Bse118I	RCCGGY	1 cut(s)	280
Bse1I	ACTGG	1 cut(s)	700
Bse3DI	GCAATG	1 cut(s)	422
BseBI	CCWGG	1 cut(s)	549
BseDI	CCNNGG	2 cut(s)	548, 570
BseGI	GGATG	2 cut(s)	621, 663
BseLI	CCNNNNNNNGG	3 cut(s)	466, 554, 674
BseMI	GCAATG	1 cut(s)	422
BseMII	CTCAG	3 cut(s)	77, 104, 337
BseNI	ACTGG	1 cut(s)	700
BseRI	GAGGAG	4 cut(s)	60, 212, 219, 693
BseXI	GCAGC	3 cut(s)	33, 345, 348
Bsh1236I	CGCG	1 cut(s)	462
Bsh1285I	CGRYCG	1 cut(s)	19
BshFI	GGCC	1 cut(s)	521
BshTI	ACCGGT	1 cut(s)	280
BsiEI	CGRYCG	1 cut(s)	19
BsiSI	CCGG	4 cut(s)	57, 119, 281, 555
BslFI	GGGAC	1 cut(s)	565
BslI	CCNNNNNNNGG	3 cut(s)	466, 554, 674
BsmAI	GTCTC	2 cut(s)	157, 289
BsmBI	CGTCTC	1 cut(s)	157
BsmFI	GGGAC	1 cut(s)	565
BsnI	GGCC	1 cut(s)	521
Bso31I	GGTCTC	1 cut(s)	289
Bsp143I	GATC	3 cut(s)	50, 89, 209
Bsp19I	CCATGG	1 cut(s)	570
BspACI	CCGC	3 cut(s)	19, 238, 460
BspANI	GGCC	1 cut(s)	521
BspCNI	CTCAG	3 cut(s)	78, 105, 336
BspFNI	CGCG	1 cut(s)	462
BspLI	GGNNCC	3 cut(s)	320, 441, 553
BspPI	GGATC	3 cut(s)	58, 84, 217
BspTNI	GGTCTC	1 cut(s)	289
BsrDI	GCAATG	1 cut(s)	422
BsrFI	RCCGGY	1 cut(s)	280
BsrI	ACTGG	1 cut(s)	700
BssAI	RCCGGY	1 cut(s)	280
BssECI	CCNNGG	2 cut(s)	548, 570
BssMI	GATC	3 cut(s)	50, 89, 209
BssT1I	CCWWGG	1 cut(s)	570
Bst2UI	CCWGG	1 cut(s)	549
Bst4CI	ACNGT	3 cut(s)	218, 439, 451
Bst6I	CTCTTC	1 cut(s)	436
BstAPI	GCANNNNNTGC	1 cut(s)	501
BstC8I	GCNNGC	3 cut(s)	131, 313, 331
BstDEI	CTNAG	3 cut(s)	86, 113, 323
BstDSI	CCRYGG	1 cut(s)	570
BstF5I	GGATG	2 cut(s)	621, 663
BstFNI	CGCG	1 cut(s)	462
BstKTI	GATC	3 cut(s)	53, 92, 212
BstMAI	GTCTC	2 cut(s)	157, 289
BstMBI	GATC	3 cut(s)	50, 89, 209
BstMCI	CGRYCG	1 cut(s)	19
BstMWI	GCNNNNNNNGC	3 cut(s)	109, 271, 501
BstNI	CCWGG	1 cut(s)	549
BstSCI	CCNGG	1 cut(s)	547
BstSFI	CTRYAG	1 cut(s)	447
BstUI	CGCG	1 cut(s)	462
BstV1I	GCAGC	3 cut(s)	33, 345, 348
BstV2I	GAAGAC	1 cut(s)	702
BstX2I	RGATCY	1 cut(s)	89
BstYI	RGATCY	1 cut(s)	89
BsuI	GTATCC	1 cut(s)	361
BsuRI	GGCC	1 cut(s)	521
BtgI	CCRYGG	1 cut(s)	570
BtrI	CACGTC	2 cut(s)	136, 466
BtsCI	GGATG	2 cut(s)	621, 663
BtsI	GCAGTG	1 cut(s)	172
BtsIMutI	CAGTG	2 cut(s)	172, 331
Cac8I	GCNNGC	3 cut(s)	131, 313, 331
Cfr10I	RCCGGY	1 cut(s)	280
Cfr13I	GGNCC	2 cut(s)	249, 552
CseI	GACGC	1 cut(s)	13
Csp6I	GTAC	1 cut(s)	457
CspAI	ACCGGT	1 cut(s)	280
CviAII	CATG	3 cut(s)	501, 571, 691
CviJI	RGCY	9 cut(s)	56, 85, 112, 274, 311, 521, 589, 613, 646
CviKI_1	RGCY	9 cut(s)	56, 85, 112, 274, 311, 521, 589, 613, 646
CviQI	GTAC	1 cut(s)	457
DdeI	CTNAG	3 cut(s)	86, 113, 323
DpnI	GATC	3 cut(s)	52, 91, 211
DpnII	GATC	3 cut(s)	50, 89, 209
DraIII	CACNNNGTG	1 cut(s)	218
DrdI	GACNNNNNNGTC	2 cut(s)	23, 559
DseDI	GACNNNNNNGTC	2 cut(s)	23, 559
Eam1104I	CTCTTC	1 cut(s)	436
EarI	CTCTTC	1 cut(s)	436
Eco130I	CCWWGG	1 cut(s)	570
Eco31I	GGTCTC	1 cut(s)	289
Eco32I	GATATC	1 cut(s)	619
Eco47I	GGWCC	2 cut(s)	249, 552
EcoRII	CCWGG	1 cut(s)	547
EcoRV	GATATC	1 cut(s)	619
EcoT14I	CCWWGG	1 cut(s)	570
EcoT22I	ATGCAT	1 cut(s)	506
ErhI	CCWWGG	1 cut(s)	570
Esp3I	CGTCTC	1 cut(s)	157
FaeI	CATG	3 cut(s)	504, 574, 694
FaiI	YATR	7 cut(s)	502, 506, 532, 534, 538, 572, 692
FaqI	GGGAC	1 cut(s)	565
FatI	CATG	3 cut(s)	500, 570, 690
Fnu4HI	GCNGC	3 cut(s)	22, 334, 337
FokI	GGATG	2 cut(s)	608, 670
Fsp4HI	GCNGC	3 cut(s)	22, 334, 337
FspBI	CTAG	1 cut(s)	614
GluI	GCNGC	3 cut(s)	22, 334, 337
GsuI	CTGGAG	1 cut(s)	696
HaeIII	GGCC	1 cut(s)	521
HapII	CCGG	4 cut(s)	57, 119, 281, 555
HgaI	GACGC	1 cut(s)	13
Hin1II	CATG	3 cut(s)	504, 574, 694
HinfI	GANTC	5 cut(s)	35, 115, 179, 226, 254
HpaII	CCGG	4 cut(s)	57, 119, 281, 555
HphI	GGTGA	4 cut(s)	4, 133, 230, 607
Hpy166II	GTNNAC	1 cut(s)	457
Hpy188I	TCNGA	6 cut(s)	50, 75, 140, 184, 209, 253
Hpy188III	TCNNGA	2 cut(s)	154, 675
Hpy8I	GTNNAC	1 cut(s)	457
Hpy99I	CGWCG	8 cut(s)	29, 50, 103, 140, 262, 265, 292, 467
HpyAV	CCTTC	6 cut(s)	15, 409, 469, 511, 674, 678
HpyCH4III	ACNGT	3 cut(s)	218, 439, 451
HpyCH4IV	ACGT	2 cut(s)	135, 465
HpyCH4V	TGCA	7 cut(s)	129, 333, 347, 427, 495, 504, 708
HpyF10VI	GCNNNNNNNGC	3 cut(s)	109, 271, 501
HpyF3I	CTNAG	3 cut(s)	86, 113, 323
HpySE526I	ACGT	2 cut(s)	135, 465
Hsp92II	CATG	3 cut(s)	504, 574, 694
Kzo9I	GATC	3 cut(s)	50, 89, 209
LmnI	GCTCC	3 cut(s)	397, 469, 680
Lsp1109I	GCAGC	3 cut(s)	33, 345, 348
LweI	GCATC	1 cut(s)	648
MaeI	CTAG	1 cut(s)	614
MaeII	ACGT	2 cut(s)	135, 465
MalI	GATC	3 cut(s)	52, 91, 211
MboI	GATC	3 cut(s)	50, 89, 209
MboII	GAAGA	4 cut(s)	138, 423, 663, 707
MflI	RGATCY	1 cut(s)	89
MluCI	AATT	6 cut(s)	94, 141, 158, 373, 598, 735
MlyI	GAGTC	2 cut(s)	124, 220
MmeI	TCCRAC	4 cut(s)	28, 63, 118, 187
Mph1103I	ATGCAT	1 cut(s)	506
MroXI	GAANNNNTTC	1 cut(s)	145
MseI	TTAA	1 cut(s)	739
MspI	CCGG	4 cut(s)	57, 119, 281, 555
MspR9I	CCNGG	1 cut(s)	549
MvaI	CCWGG	1 cut(s)	549
MvnI	CGCG	1 cut(s)	462
MwoI	GCNNNNNNNGC	3 cut(s)	109, 271, 501
NcoI	CCATGG	1 cut(s)	570
NdeII	GATC	3 cut(s)	50, 89, 209
NlaIII	CATG	3 cut(s)	504, 574, 694
NlaIV	GGNNCC	3 cut(s)	320, 441, 553
NmeAIII	GCCGAG	1 cut(s)	547
NsiI	ATGCAT	1 cut(s)	506
PcsI	WCGNNNNNNNCGW	1 cut(s)	263
PdmI	GAANNNNTTC	1 cut(s)	145
PfeI	GAWTC	3 cut(s)	35, 179, 254
PinAI	ACCGGT	1 cut(s)	280
PkrI	GCNGC	3 cut(s)	23, 335, 338
PleI	GAGTC	2 cut(s)	123, 220
PpsI	GAGTC	2 cut(s)	123, 220
Psp6I	CCWGG	1 cut(s)	547
PspGI	CCWGG	1 cut(s)	547
PspN4I	GGNNCC	3 cut(s)	320, 441, 553
PspPI	GGNCC	2 cut(s)	249, 552
PsuI	RGATCY	1 cut(s)	89
RsaI	GTAC	1 cut(s)	458
RsaNI	GTAC	1 cut(s)	457
SaqAI	TTAA	1 cut(s)	739
SatI	GCNGC	3 cut(s)	22, 334, 337
Sau3AI	GATC	3 cut(s)	50, 89, 209
Sau96I	GGNCC	2 cut(s)	249, 552
SchI	GAGTC	2 cut(s)	124, 220
ScrFI	CCNGG	1 cut(s)	549
SetI	ASST	9 cut(s)	114, 138, 204, 251, 324, 468, 591, 615, 648
SfaNI	GCATC	1 cut(s)	648
SfcI	CTRYAG	1 cut(s)	447
SinI	GGWCC	2 cut(s)	249, 552
Sse9I	AATT	6 cut(s)	94, 141, 158, 373, 598, 735
SsiI	CCGC	3 cut(s)	19, 238, 460
SspMI	CTAG	1 cut(s)	614
StyD4I	CCNGG	1 cut(s)	547
StyI	CCWWGG	1 cut(s)	570
TaaI	ACNGT	3 cut(s)	218, 439, 451
TaiI	ACGT	2 cut(s)	138, 468
TaqI	TCGA	4 cut(s)	27, 33, 155, 177
TasI	AATT	6 cut(s)	94, 141, 158, 373, 598, 735
TfiI	GAWTC	3 cut(s)	35, 179, 254
Tru1I	TTAA	1 cut(s)	739
Tru9I	TTAA	1 cut(s)	739
TscAI	CASTG	2 cut(s)	172, 331
TseI	GCWGC	3 cut(s)	21, 333, 336
TspDTI	ATGAA	3 cut(s)	122, 284, 311
TspGWI	ACGGA	2 cut(s)	94, 139
TspRI	CASTG	2 cut(s)	172, 331
VpaK11BI	GGWCC	2 cut(s)	249, 552
XapI	RAATTY	1 cut(s)	141
XmnI	GAANNNNTTC	1 cut(s)	145
XspI	CTAG	1 cut(s)	614
Zsp2I	ATGCAT	1 cut(s)	506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.