Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002408

Physical Location & Seq

Genomic Coordinates Reverse (-)

60116036 .. 60117118

Gene Structure 1083 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00379910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGCACTCGCGACCGACCGGAACTTCCACGTTCGGCCACCCCACGACGGCGCTCGACCACCAATGTCTTCGTCTCCTCGTCGCCATCACGCTTGCGGTCTCGGACCACTCATGCACCCGACGAGGAGGGAGAAACGACAGAGAGAAGCCCGAACCTTCGGAAGCAAGCCATGCAATTTCCGGCGACTCCGCCACCGATCGGGCCTCATGTGAAATACAAAAGGAGGGGCAGCGTGCACGCGCTGCTGGGGAGCGTGGATGTGAAATGCCCGAACAAGATCCTGCTAATGTACGCCGCCACGGCAGCAACGAGAAACATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

107

Amino Acids

11.66

Weight (kDa)

6.65

Isoelectric Point (pI)

61.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002408)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0117421 RchiOBHm_Chr2g0147571
rosa_laevigata	RLG00000009715 RLG00000036789
rosa_multiflora	Rmu_sc0005551.1_g000001 Rmu_sc0005551.1_g000002 Rmu_sc0006255.1_g000001 Rmu_sc0006255.1_g000006 Rmu_sc0006255.1_g000008 Rmu_sc0006368.1_g000001 Rmu_sc0008753.1_g000001 Rmu_sc0010335.1_g000001 Rmu_sc0010420.1_g000002 Rmu_sc0013459.1_g000003 Rmu_sc0029520.1_g000001 Rmu_sc0031364.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029450 Rroxscaffold_1G00029500 Rroxscaffold_1G00029570 Rroxscaffold_1G00029580 Rroxscaffold_1G00029590 Rroxscaffold_5G00379910 Rroxscaffold_7G00209950
rosa_rugosa	Rorug01G0060000 Rorug03G0369200.1 Rorug05G0426400 Rorug05G0426500 Rorug05G0426600
rosa_samantha	Rh1AG147300 Rh1BG061700 Rh1CG138600 Rh2BG280100 Rh2BG537700 Rh2CG258400 Rh2CG272200 Rh2DG275000 Rh2DG290600 Rh2DG294200 Rh2DG294400 Rh5BG473700 Rh7AG238100 Rh7CG254700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	10, 240
AciI	CCGC	3 cut(s)	95, 189, 295
AclWI	GGATC	1 cut(s)	272
AcoI	YGGCCR	1 cut(s)	34
AfaI	GTAC	1 cut(s)	291
AfiI	CCNNNNNNNGG	2 cut(s)	46, 198
Alw21I	GWGCWC	1 cut(s)	238
Alw26I	GTCTC	2 cut(s)	77, 103
Alw44I	GTGCAC	1 cut(s)	234
AlwI	GGATC	1 cut(s)	272
AoxI	GGCC	2 cut(s)	34, 201
ApaLI	GTGCAC	1 cut(s)	234
ApeKI	GCWGC	3 cut(s)	229, 242, 303
AspLEI	GCGC	2 cut(s)	52, 242
AspS9I	GGNCC	2 cut(s)	103, 201
AvaII	GGWCC	1 cut(s)	103
BaeGI	GKGCMC	1 cut(s)	238
BbsI	GAAGAC	1 cut(s)	59
Bbv12I	GWGCWC	1 cut(s)	238
BbvI	GCAGC	3 cut(s)	229, 241, 315
BccI	CCATC	1 cut(s)	92
BceAI	ACGGC	2 cut(s)	63, 316
BcoDI	GTCTC	2 cut(s)	77, 103
BfoI	RGCGCY	1 cut(s)	53
BglI	GCCNNNNNGGC	1 cut(s)	300
BisI	GCNGC	4 cut(s)	230, 243, 295, 304
BlsI	GCNGC	4 cut(s)	231, 244, 296, 305
Bme18I	GGWCC	1 cut(s)	103
BmgT120I	GGNCC	2 cut(s)	103, 201
BpiI	GAAGAC	1 cut(s)	59
BsaI	GGTCTC	1 cut(s)	103
BsaJI	CCNNGG	1 cut(s)	298
BsaWI	WCCGGW	1 cut(s)	17
Bsc4I	CCNNNNNNNGG	2 cut(s)	46, 198
BseDI	CCNNGG	1 cut(s)	298
BseGI	GGATG	1 cut(s)	263
BseLI	CCNNNNNNNGG	2 cut(s)	46, 198
BseRI	GAGGAG	2 cut(s)	65, 138
BseSI	GKGCMC	1 cut(s)	238
BseXI	GCAGC	3 cut(s)	229, 241, 315
BseYI	CCCAGC	1 cut(s)	245
Bsh1236I	CGCG	2 cut(s)	10, 240
Bsh1285I	CGRYCG	3 cut(s)	14, 18, 199
BshFI	GGCC	2 cut(s)	36, 203
BsiEI	CGRYCG	3 cut(s)	14, 18, 199
BsiHKAI	GWGCWC	1 cut(s)	238
BsiSI	CCGG	2 cut(s)	18, 180
BslI	CCNNNNNNNGG	2 cut(s)	46, 198
BsmAI	GTCTC	2 cut(s)	77, 103
BsmBI	CGTCTC	1 cut(s)	77
BsnI	GGCC	2 cut(s)	36, 203
Bso31I	GGTCTC	1 cut(s)	103
Bsp1286I	GDGCHC	1 cut(s)	238
Bsp143I	GATC	2 cut(s)	196, 277
Bsp68I	TCGCGA	1 cut(s)	10
BspACI	CCGC	3 cut(s)	95, 189, 295
BspANI	GGCC	2 cut(s)	36, 203
BspFNI	CGCG	2 cut(s)	10, 240
BspPI	GGATC	1 cut(s)	272
BspTNI	GGTCTC	1 cut(s)	103
BssECI	CCNNGG	1 cut(s)	298
BssMI	GATC	2 cut(s)	196, 277
BstAPI	GCANNNNNTGC	2 cut(s)	170, 242
BstC8I	GCNNGC	4 cut(s)	93, 166, 234, 238
BstDSI	CCRYGG	1 cut(s)	298
BstF5I	GGATG	1 cut(s)	263
BstFNI	CGCG	2 cut(s)	10, 240
BstH2I	RGCGCY	1 cut(s)	53
BstHHI	GCGC	2 cut(s)	52, 242
BstKTI	GATC	2 cut(s)	199, 280
BstMAI	GTCTC	2 cut(s)	77, 103
BstMBI	GATC	2 cut(s)	196, 277
BstMCI	CGRYCG	3 cut(s)	14, 18, 199
BstMWI	GCNNNNNNNGC	4 cut(s)	170, 242, 300, 303
BstSLI	GKGCMC	1 cut(s)	238
BstUI	CGCG	2 cut(s)	10, 240
BstV1I	GCAGC	3 cut(s)	229, 241, 315
BstV2I	GAAGAC	1 cut(s)	59
BstX2I	RGATCY	1 cut(s)	277
BstYI	RGATCY	1 cut(s)	277
BsuRI	GGCC	2 cut(s)	36, 203
BtgI	CCRYGG	1 cut(s)	298
BtsCI	GGATG	1 cut(s)	263
BtuMI	TCGCGA	1 cut(s)	10
Cac8I	GCNNGC	4 cut(s)	93, 166, 234, 238
CfoI	GCGC	2 cut(s)	52, 242
Cfr13I	GGNCC	2 cut(s)	103, 201
Csp6I	GTAC	1 cut(s)	290
CviAII	CATG	4 cut(s)	111, 170, 207, 317
CviJI	RGCY	4 cut(s)	36, 148, 168, 203
CviKI_1	RGCY	4 cut(s)	36, 148, 168, 203
CviQI	GTAC	1 cut(s)	290
DpnI	GATC	2 cut(s)	198, 279
DpnII	GATC	2 cut(s)	196, 277
EaeI	YGGCCR	1 cut(s)	34
EciI	GGCGGA	1 cut(s)	178
Eco31I	GGTCTC	1 cut(s)	103
Eco47I	GGWCC	1 cut(s)	103
Esp3I	CGTCTC	1 cut(s)	77
FaeI	CATG	4 cut(s)	114, 173, 210, 320
FaiI	YATR	4 cut(s)	112, 171, 208, 318
FatI	CATG	4 cut(s)	110, 169, 206, 316
Fnu4HI	GCNGC	4 cut(s)	230, 243, 295, 304
FokI	GGATG	1 cut(s)	270
Fsp4HI	GCNGC	4 cut(s)	230, 243, 295, 304
GlaI	GCGC	2 cut(s)	51, 241
GluI	GCNGC	4 cut(s)	230, 243, 295, 304
GsaI	CCCAGC	1 cut(s)	249
HaeII	RGCGCY	1 cut(s)	53
HaeIII	GGCC	2 cut(s)	36, 203
HapII	CCGG	2 cut(s)	18, 180
HhaI	GCGC	2 cut(s)	52, 242
Hin1II	CATG	4 cut(s)	114, 173, 210, 320
Hin6I	GCGC	2 cut(s)	50, 240
HinP1I	GCGC	2 cut(s)	50, 240
HinfI	GANTC	1 cut(s)	185
HpaII	CCGG	2 cut(s)	18, 180
Hpy166II	GTNNAC	1 cut(s)	236
Hpy188I	TCNGA	2 cut(s)	103, 160
Hpy188III	TCNNGA	1 cut(s)	9
Hpy8I	GTNNAC	1 cut(s)	236
Hpy99I	CGWCG	3 cut(s)	49, 83, 123
HpyAV	CCTTC	1 cut(s)	165
HpyCH4IV	ACGT	1 cut(s)	29
HpyCH4V	TGCA	4 cut(s)	4, 114, 173, 236
HpyF10VI	GCNNNNNNNGC	4 cut(s)	170, 242, 300, 303
HpySE526I	ACGT	1 cut(s)	29
Hsp92II	CATG	4 cut(s)	114, 173, 210, 320
HspAI	GCGC	2 cut(s)	50, 240
Kzo9I	GATC	2 cut(s)	196, 277
LmnI	GCTCC	1 cut(s)	250
LpnPI	CCDG	4 cut(s)	31, 193, 231, 294
Lsp1109I	GCAGC	3 cut(s)	229, 241, 315
MaeII	ACGT	1 cut(s)	29
MalI	GATC	2 cut(s)	198, 279
MboI	GATC	2 cut(s)	196, 277
MboII	GAAGA	1 cut(s)	59
MflI	RGATCY	1 cut(s)	277
MhlI	GDGCHC	1 cut(s)	238
MluCI	AATT	1 cut(s)	174
MlyI	GAGTC	1 cut(s)	179
MnlI	CCTC	5 cut(s)	86, 116, 119, 214, 217
MspI	CCGG	2 cut(s)	18, 180
MvnI	CGCG	2 cut(s)	10, 240
MwoI	GCNNNNNNNGC	4 cut(s)	170, 242, 300, 303
NdeII	GATC	2 cut(s)	196, 277
NlaIII	CATG	4 cut(s)	114, 173, 210, 320
NruI	TCGCGA	1 cut(s)	10
PcsI	WCGNNNNNNNCGW	1 cut(s)	306
PkrI	GCNGC	4 cut(s)	231, 244, 296, 305
Ple19I	CGATCG	1 cut(s)	199
PleI	GAGTC	1 cut(s)	179
PpsI	GAGTC	1 cut(s)	179
PspFI	CCCAGC	1 cut(s)	245
PspPI	GGNCC	2 cut(s)	103, 201
PsuI	RGATCY	1 cut(s)	277
PvuI	CGATCG	1 cut(s)	199
RruI	TCGCGA	1 cut(s)	10
RsaI	GTAC	1 cut(s)	291
RsaNI	GTAC	1 cut(s)	290
SatI	GCNGC	4 cut(s)	230, 243, 295, 304
Sau3AI	GATC	2 cut(s)	196, 277
Sau96I	GGNCC	2 cut(s)	103, 201
SchI	GAGTC	1 cut(s)	179
SduI	GDGCHC	1 cut(s)	238
SetI	ASST	2 cut(s)	32, 157
SinI	GGWCC	1 cut(s)	103
Sse9I	AATT	1 cut(s)	174
SsiI	CCGC	3 cut(s)	95, 189, 295
TaiI	ACGT	1 cut(s)	32
TaqI	TCGA	1 cut(s)	54
TaqII	GACCGA	1 cut(s)	28
TasI	AATT	1 cut(s)	174
TauI	GCSGC	1 cut(s)	297
TseI	GCWGC	3 cut(s)	229, 242, 303
VneI	GTGCAC	1 cut(s)	234
VpaK11BI	GGWCC	1 cut(s)	103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.