Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002408

Physical Location & Seq

Genomic Coordinates Forward (+)

38195231 .. 38196257

Gene Structure 1027 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00029590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGAAAATCCTATTCCCGCTAAAAGGCACCAAAATCCCTACACCCTTTTTCAATTTCCACCGAAATCTCCGTCTCCCTCTATATAGCCTTACACCCCTCGGCGCTCTCGTGTTTAAGCAAGCTTCGATTCCCGTCACATCTTCGCTTCTTCTCAAAACCTCCCCCCCCCCATTTGCCGTCGCCCGATTCACAATGCCTTCCATCGCCGACCGCAAGCGTCGAACACGAATCCAACGCCGTTGGATCCGCCGGAGTTTCTACTTCTCCCGAAACGGAGGCCGAGATCCATTCGTCGCCGATGAAGCCGAGTCCGGTGAAATGCAAGCGTGTCGGAATTTCTTCCGTCGCGAAATTACGCAGCGTTATGGTCGAATCGGAGGGAGTGTGGAGGAGGTAGTCGGATCCGGCGGTGATTTGACTCCTCGAAGCGGAAATAAGGAGCAGATGAGGATAGTGAAGGAGGCATTGCACTTGTCTACGGTTCCCTCTACGATTGCATGCCGCGACGTGGAGCAGAAGAGGGTTTTAGAGTTCTGCAAGTCATGCATAGAGCAAGAGAAGGCCGGGAGTTTATATGTGTGCGGGTGTCCCGGGTCCGGAAAGTCCTTGTCCATGGAGAAAGTGAAACAGCTTTTGGTGAATTGGGGGGAGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0022402 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044786 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA_22 Cdc6_C

Protein Analysis

218

Amino Acids

24.65

Weight (kDa)

10.2

Isoelectric Point (pI)

57.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002408)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0117421 RchiOBHm_Chr2g0147571
rosa_laevigata	RLG00000009715 RLG00000036789
rosa_multiflora	Rmu_sc0005551.1_g000001 Rmu_sc0005551.1_g000002 Rmu_sc0006255.1_g000001 Rmu_sc0006255.1_g000006 Rmu_sc0006255.1_g000008 Rmu_sc0006368.1_g000001 Rmu_sc0008753.1_g000001 Rmu_sc0010335.1_g000001 Rmu_sc0010420.1_g000002 Rmu_sc0013459.1_g000003 Rmu_sc0029520.1_g000001 Rmu_sc0031364.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029450 Rroxscaffold_1G00029500 Rroxscaffold_1G00029570 Rroxscaffold_1G00029580 Rroxscaffold_1G00029590 Rroxscaffold_5G00379910 Rroxscaffold_7G00209950
rosa_rugosa	Rorug01G0060000 Rorug03G0369200.1 Rorug05G0426400 Rorug05G0426500 Rorug05G0426600
rosa_samantha	Rh1AG147300 Rh1BG061700 Rh1CG138600 Rh2BG280100 Rh2BG537700 Rh2CG258400 Rh2CG272200 Rh2DG275000 Rh2DG290600 Rh2DG294200 Rh2DG294400 Rh5BG473700 Rh7AG238100 Rh7CG254700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	26
AccI	GTMKAC	1 cut(s)	476
AccII	CGCG	2 cut(s)	348, 504
AccIII	TCCGGA	1 cut(s)	596
AciI	CCGC	7 cut(s)	17, 211, 247, 408, 429, 502, 582
AclWI	GGATC	5 cut(s)	238, 251, 278, 396, 409
AcsI	RAATTY	1 cut(s)	334
AfiI	CCNNNNNNNGG	4 cut(s)	23, 428, 508, 596
AgsI	TTSAA	1 cut(s)	52
AjiI	CACGTC	1 cut(s)	508
AjuI	GAANNNNNNNTTGG	2 cut(s)	617, 649
AluBI	AGCT	2 cut(s)	122, 631
AluI	AGCT	2 cut(s)	122, 631
Alw26I	GTCTC	1 cut(s)	77
AlwI	GGATC	5 cut(s)	238, 251, 278, 396, 409
Ama87I	CYCGRG	1 cut(s)	590
Aor13HI	TCCGGA	1 cut(s)	596
AoxI	GGCC	2 cut(s)	277, 561
ApeKI	GCWGC	1 cut(s)	358
ApoI	RAATTY	1 cut(s)	334
ArsI	GACNNNNNNTTYG	2 cut(s)	55, 87
Asp700I	GAANNNNTTC	1 cut(s)	338
AspLEI	GCGC	1 cut(s)	104
AspS9I	GGNCC	1 cut(s)	594
AsuC2I	CCSGG	3 cut(s)	565, 591, 592
AsuHPI	GGTGA	3 cut(s)	326, 422, 649
AvaI	CYCGRG	1 cut(s)	590
AvaII	GGWCC	1 cut(s)	594
BamHI	GGATCC	2 cut(s)	243, 401
BanI	GGYRCC	1 cut(s)	26
BauI	CACGAG	1 cut(s)	107
BbvI	GCAGC	1 cut(s)	370
BccI	CCATC	1 cut(s)	209
BceAI	ACGGC	2 cut(s)	161, 222
BcgI	CGANNNNNNTGC	2 cut(s)	311, 345
BcnI	CCSGG	3 cut(s)	565, 591, 592
BcoDI	GTCTC	1 cut(s)	77
BfoI	RGCGCY	1 cut(s)	105
BisI	GCNGC	2 cut(s)	359, 502
BlsI	GCNGC	2 cut(s)	360, 503
Bme1390I	CCNGG	3 cut(s)	565, 591, 592
Bme18I	GGWCC	1 cut(s)	594
BmeT110I	CYCGRG	1 cut(s)	590
BmgBI	CACGTC	1 cut(s)	508
BmgT120I	GGNCC	1 cut(s)	594
BmiI	GGNNCC	5 cut(s)	28, 245, 403, 483, 595
BmrFI	CCNGG	3 cut(s)	565, 591, 592
BpuMI	CCSGG	3 cut(s)	565, 591, 592
BsaJI	CCNNGG	3 cut(s)	97, 590, 612
BsaWI	WCCGGW	2 cut(s)	311, 596
BsaXI	ACNNNNNCTCC	2 cut(s)	369, 399
Bsc4I	CCNNNNNNNGG	4 cut(s)	23, 428, 508, 596
Bse3DI	GCAATG	1 cut(s)	464
BseAI	TCCGGA	1 cut(s)	596
BseDI	CCNNGG	3 cut(s)	97, 590, 612
BseLI	CCNNNNNNNGG	4 cut(s)	23, 428, 508, 596
BseMI	GCAATG	1 cut(s)	464
BseRI	GAGGAG	2 cut(s)	404, 411
BseXI	GCAGC	1 cut(s)	370
Bsh1236I	CGCG	2 cut(s)	348, 504
Bsh1285I	CGRYCG	1 cut(s)	211
BshFI	GGCC	2 cut(s)	279, 563
BshNI	GGYRCC	1 cut(s)	26
BsiEI	CGRYCG	1 cut(s)	211
BsiHKCI	CYCGRG	1 cut(s)	590
BsiSI	CCGG	6 cut(s)	250, 312, 405, 564, 591, 597
BslFI	GGGAC	1 cut(s)	573
BslI	CCNNNNNNNGG	4 cut(s)	23, 428, 508, 596
BsmAI	GTCTC	1 cut(s)	77
BsmBI	CGTCTC	1 cut(s)	77
BsmFI	GGGAC	1 cut(s)	573
BsnI	GGCC	2 cut(s)	279, 563
BsoBI	CYCGRG	1 cut(s)	590
Bsp13I	TCCGGA	1 cut(s)	596
Bsp143I	GATC	3 cut(s)	243, 283, 401
Bsp19I	CCATGG	1 cut(s)	612
Bsp68I	TCGCGA	1 cut(s)	348
BspACI	CCGC	7 cut(s)	17, 211, 247, 408, 429, 502, 582
BspANI	GGCC	2 cut(s)	279, 563
BspEI	TCCGGA	1 cut(s)	596
BspFNI	CGCG	2 cut(s)	348, 504
BspLI	GGNNCC	5 cut(s)	28, 245, 403, 483, 595
BspPI	GGATC	5 cut(s)	238, 251, 278, 396, 409
BspT107I	GGYRCC	1 cut(s)	26
BsrDI	GCAATG	1 cut(s)	464
BssECI	CCNNGG	3 cut(s)	97, 590, 612
BssMI	GATC	3 cut(s)	243, 283, 401
BssSI	CACGAG	1 cut(s)	107
BssT1I	CCWWGG	1 cut(s)	612
Bst2BI	CACGAG	1 cut(s)	107
Bst4CI	ACNGT	1 cut(s)	481
Bst6I	CTCTTC	1 cut(s)	512
BstAPI	GCANNNNNTGC	1 cut(s)	543
BstC8I	GCNNGC	4 cut(s)	120, 215, 324, 499
BstDSI	CCRYGG	1 cut(s)	612
BstFNI	CGCG	2 cut(s)	348, 504
BstH2I	RGCGCY	1 cut(s)	105
BstHHI	GCGC	1 cut(s)	104
BstKTI	GATC	3 cut(s)	246, 286, 404
BstMAI	GTCTC	1 cut(s)	77
BstMBI	GATC	3 cut(s)	243, 283, 401
BstMCI	CGRYCG	1 cut(s)	211
BstMWI	GCNNNNNNNGC	2 cut(s)	302, 543
BstNSI	RCATGY	1 cut(s)	501
BstSCI	CCNGG	3 cut(s)	563, 589, 590
BstUI	CGCG	2 cut(s)	348, 504
BstV1I	GCAGC	1 cut(s)	370
BstX2I	RGATCY	3 cut(s)	243, 283, 401
BstYI	RGATCY	3 cut(s)	243, 283, 401
BsuRI	GGCC	2 cut(s)	279, 563
BtgI	CCRYGG	1 cut(s)	612
BtgZI	GCGATG	1 cut(s)	187
BtrI	CACGTC	1 cut(s)	508
BtuMI	TCGCGA	1 cut(s)	348
Cac8I	GCNNGC	4 cut(s)	120, 215, 324, 499
CfoI	GCGC	1 cut(s)	104
Cfr13I	GGNCC	1 cut(s)	594
Cfr9I	CCCGGG	1 cut(s)	590
CseI	GACGC	1 cut(s)	206
CviAII	CATG	3 cut(s)	498, 543, 613
CviJI	RGCY	6 cut(s)	87, 122, 279, 305, 563, 631
CviKI_1	RGCY	6 cut(s)	87, 122, 279, 305, 563, 631
DpnI	GATC	3 cut(s)	245, 285, 403
DpnII	GATC	3 cut(s)	243, 283, 401
Eam1104I	CTCTTC	1 cut(s)	512
EarI	CTCTTC	1 cut(s)	512
EciI	GGCGGA	1 cut(s)	236
Eco130I	CCWWGG	1 cut(s)	612
Eco47I	GGWCC	1 cut(s)	594
Eco88I	CYCGRG	1 cut(s)	590
EcoT14I	CCWWGG	1 cut(s)	612
EcoT22I	ATGCAT	1 cut(s)	548
ErhI	CCWWGG	1 cut(s)	612
Esp3I	CGTCTC	1 cut(s)	77
FaeI	CATG	3 cut(s)	501, 546, 616
FaiI	YATR	9 cut(s)	82, 84, 366, 499, 544, 548, 574, 576, 614
FaqI	GGGAC	1 cut(s)	573
FatI	CATG	3 cut(s)	497, 542, 612
FauI	CCCGC	2 cut(s)	24, 575
FblI	GTMKAC	1 cut(s)	476
Fnu4HI	GCNGC	2 cut(s)	359, 502
Fsp4HI	GCNGC	2 cut(s)	359, 502
GlaI	GCGC	1 cut(s)	103
GluI	GCNGC	2 cut(s)	359, 502
HaeII	RGCGCY	1 cut(s)	105
HaeIII	GGCC	2 cut(s)	279, 563
HapII	CCGG	6 cut(s)	250, 312, 405, 564, 591, 597
HgaI	GACGC	1 cut(s)	206
HhaI	GCGC	1 cut(s)	104
Hin1II	CATG	3 cut(s)	501, 546, 616
Hin6I	GCGC	1 cut(s)	102
HinP1I	GCGC	1 cut(s)	102
HindIII	AAGCTT	1 cut(s)	120
HinfI	GANTC	6 cut(s)	127, 186, 228, 308, 372, 418
HpaII	CCGG	6 cut(s)	250, 312, 405, 564, 591, 597
HphI	GGTGA	3 cut(s)	326, 422, 649
Hpy166II	GTNNAC	1 cut(s)	477
Hpy188I	TCNGA	3 cut(s)	333, 377, 401
Hpy188III	TCNNGA	3 cut(s)	267, 347, 597
Hpy8I	GTNNAC	1 cut(s)	477
Hpy99I	CGWCG	5 cut(s)	182, 222, 296, 348, 509
HpyAV	CCTTC	3 cut(s)	207, 451, 553
HpyCH4III	ACNGT	1 cut(s)	481
HpyCH4IV	ACGT	1 cut(s)	507
HpyCH4V	TGCA	5 cut(s)	322, 469, 497, 537, 546
HpyF10VI	GCNNNNNNNGC	2 cut(s)	302, 543
HpySE526I	ACGT	1 cut(s)	507
Hsp92II	CATG	3 cut(s)	501, 546, 616
HspAI	GCGC	1 cut(s)	102
Kpn2I	TCCGGA	1 cut(s)	596
Kzo9I	GATC	3 cut(s)	243, 283, 401
LmnI	GCTCC	2 cut(s)	439, 511
LpnPI	CCDG	6 cut(s)	263, 325, 418, 577, 604, 610
Lsp1109I	GCAGC	1 cut(s)	370
MaeII	ACGT	1 cut(s)	507
MaeIII	GTNAC	1 cut(s)	133
MalI	GATC	3 cut(s)	245, 285, 403
MboI	GATC	3 cut(s)	243, 283, 401
MboII	GAAGA	4 cut(s)	132, 140, 331, 529
MflI	RGATCY	3 cut(s)	243, 283, 401
MluCI	AATT	4 cut(s)	52, 334, 351, 640
MlyI	GAGTC	2 cut(s)	317, 412
MmeI	TCCRAC	4 cut(s)	221, 256, 311, 379
Mph1103I	ATGCAT	1 cut(s)	548
MroI	TCCGGA	1 cut(s)	596
MroXI	GAANNNNTTC	1 cut(s)	338
MseI	TTAA	1 cut(s)	114
MspI	CCGG	6 cut(s)	250, 312, 405, 564, 591, 597
MspR9I	CCNGG	3 cut(s)	565, 591, 592
MvnI	CGCG	2 cut(s)	348, 504
MwoI	GCNNNNNNNGC	2 cut(s)	302, 543
NciI	CCSGG	3 cut(s)	565, 591, 592
NcoI	CCATGG	1 cut(s)	612
NdeII	GATC	3 cut(s)	243, 283, 401
NlaIII	CATG	3 cut(s)	501, 546, 616
NlaIV	GGNNCC	5 cut(s)	28, 245, 403, 483, 595
NmeAIII	GCCGAG	3 cut(s)	78, 305, 331
NmuCI	GTSAC	1 cut(s)	133
NruI	TCGCGA	1 cut(s)	348
NsiI	ATGCAT	1 cut(s)	548
NspI	RCATGY	1 cut(s)	501
PaeI	GCATGC	1 cut(s)	501
PcsI	WCGNNNNNNNCGW	1 cut(s)	105
PdmI	GAANNNNTTC	1 cut(s)	338
PfeI	GAWTC	4 cut(s)	127, 186, 228, 372
PkrI	GCNGC	2 cut(s)	360, 503
PleI	GAGTC	2 cut(s)	316, 412
PpsI	GAGTC	2 cut(s)	316, 412
PspN4I	GGNNCC	5 cut(s)	28, 245, 403, 483, 595
PspPI	GGNCC	1 cut(s)	594
PsuI	RGATCY	3 cut(s)	243, 283, 401
RruI	TCGCGA	1 cut(s)	348
SaqAI	TTAA	1 cut(s)	114
SatI	GCNGC	2 cut(s)	359, 502
Sau3AI	GATC	3 cut(s)	243, 283, 401
Sau96I	GGNCC	1 cut(s)	594
SchI	GAGTC	2 cut(s)	317, 412
ScrFI	CCNGG	3 cut(s)	565, 591, 592
SetI	ASST	6 cut(s)	124, 161, 396, 510, 633, 656
SinI	GGWCC	1 cut(s)	594
SmaI	CCCGGG	1 cut(s)	592
SphI	GCATGC	1 cut(s)	501
Sse9I	AATT	4 cut(s)	52, 334, 351, 640
SsiI	CCGC	7 cut(s)	17, 211, 247, 408, 429, 502, 582
StyD4I	CCNGG	3 cut(s)	563, 589, 590
StyI	CCWWGG	1 cut(s)	612
TaaI	ACNGT	1 cut(s)	481
TaiI	ACGT	1 cut(s)	510
TaqI	TCGA	4 cut(s)	125, 220, 370, 424
TasI	AATT	4 cut(s)	52, 334, 351, 640
TauI	GCSGC	1 cut(s)	504
TfiI	GAWTC	4 cut(s)	127, 186, 228, 372
Tru1I	TTAA	1 cut(s)	114
Tru9I	TTAA	1 cut(s)	114
TseFI	GTSAC	1 cut(s)	133
TseI	GCWGC	1 cut(s)	358
Tsp45I	GTSAC	1 cut(s)	133
TspDTI	ATGAA	2 cut(s)	17, 315
TspGWI	ACGGA	3 cut(s)	59, 288, 332
TspMI	CCCGGG	1 cut(s)	590
VpaK11BI	GGWCC	1 cut(s)	594
XapI	RAATTY	1 cut(s)	334
XceI	RCATGY	1 cut(s)	501
XmaI	CCCGGG	1 cut(s)	590
XmiI	GTMKAC	1 cut(s)	476
XmnI	GAANNNNTTC	1 cut(s)	338
Zsp2I	ATGCAT	1 cut(s)	548

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.