Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0002408

Physical Location & Seq

Genomic Coordinates Forward (+)

9140668 .. 9142060

Gene Structure 1393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG061700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGCCTTCCATCGCCGACCGGAGCGTCGAACTCGAATCCAACGCCGTCGGATCCGCCGGAGTTTCTACTCCTCTGAAACGGAGGCTGAGATCCAATTCGTCGCCGATGAAGCTGAGTCCGGTGAAATGCAAGCGCGTCGGAATTTCTTCCGTCGCGAAATTTCGCAGCGTTGTGGTCGAATCGGAGAGGAGCGTGGAGGAGGTAGTCGGATCCGGCGGTGATTTGACTCCTCAGAAGCGGAAGTTGAGGTCCGATTCGTCGTCGCCGATGAAGCCGAGACCGGTCTCGTCGCCGATGAAGTGTAAATCGGCTCGCCGGAACCTCAGTGCTTGCAGTAGCACTCCTGCAAATGGAATTGAGAAGTATTTCAGTCAGAAAAAGCCTCAAGCCTTTTGCAAACCACCGGTTGTTGCTAAGCCGAATTGGAATCCCAGAGATAAGGAGCAGATGAGGATAGTGAAGGAGGCATTGCACTTGTCTACGGTACCCTCTACAGTTGCGTGCCGCGACGTGGAGCAGAAGAGGGTTTTGGAGTTCTGCAAGTCATGCATAGAGCAAGAGAAGGCCAGGAGTTTATATGTATGCGGGTGTCCTGGGACCGGAAAGTCCTTGTCCATGGAGAAAGTGAAACAGCTTTTGGTGAATTGGGCAGGAGAGATGTCCTTATCCAATTTTGCCTGCCAGATACTTGGTAAATACCAACCTCAAAAGAAAGCTAATGGCACTACCTCCCTGCAACTTCTTCAGAAATTATATTCTCAAAAGCCTCAGTCAGATGGGACTAAGATGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0022402 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044786 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA_22 Cdc6_C

Protein Analysis

264

Amino Acids

29.01

Weight (kDa)

9.92

Isoelectric Point (pI)

68.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002408)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0117421 RchiOBHm_Chr2g0147571
rosa_laevigata	RLG00000009715 RLG00000036789
rosa_multiflora	Rmu_sc0005551.1_g000001 Rmu_sc0005551.1_g000002 Rmu_sc0006255.1_g000001 Rmu_sc0006255.1_g000006 Rmu_sc0006255.1_g000008 Rmu_sc0006368.1_g000001 Rmu_sc0008753.1_g000001 Rmu_sc0010335.1_g000001 Rmu_sc0010420.1_g000002 Rmu_sc0013459.1_g000003 Rmu_sc0029520.1_g000001 Rmu_sc0031364.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029450 Rroxscaffold_1G00029500 Rroxscaffold_1G00029570 Rroxscaffold_1G00029580 Rroxscaffold_1G00029590 Rroxscaffold_5G00379910 Rroxscaffold_7G00209950
rosa_rugosa	Rorug01G0060000 Rorug03G0369200.1 Rorug05G0426400 Rorug05G0426500 Rorug05G0426600
rosa_samantha	Rh1AG147300 Rh1BG061700 Rh1CG138600 Rh2BG280100 Rh2BG537700 Rh2CG258400 Rh2CG272200 Rh2DG275000 Rh2DG290600 Rh2DG294200 Rh2DG294400 Rh5BG473700 Rh7AG238100 Rh7CG254700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	23, 604
Acc65I	GGTACC	1 cut(s)	484
AccB1I	GGYRCC	1 cut(s)	484
AccI	GTMKAC	1 cut(s)	479
AccII	CGCG	3 cut(s)	135, 155, 507
AciI	CCGC	5 cut(s)	54, 216, 238, 505, 585
AclWI	GGATC	5 cut(s)	45, 58, 84, 204, 217
AcsI	RAATTY	2 cut(s)	141, 158
AcuI	CTGAAG	1 cut(s)	728
AfaI	GTAC	1 cut(s)	486
AfiI	CCNNNNNNNGG	3 cut(s)	350, 511, 599
AgeI	ACCGGT	2 cut(s)	280, 403
AjiI	CACGTC	1 cut(s)	511
AjnI	CCWGG	2 cut(s)	566, 592
AjuI	GAANNNNNNNTTGG	4 cut(s)	512, 544, 620, 652
AluBI	AGCT	3 cut(s)	112, 634, 716
AluI	AGCT	3 cut(s)	112, 634, 716
Alw26I	GTCTC	2 cut(s)	271, 289
AlwI	GGATC	5 cut(s)	45, 58, 84, 204, 217
AoxI	GGCC	1 cut(s)	564
ApeKI	GCWGC	1 cut(s)	165
ApoI	RAATTY	2 cut(s)	141, 158
AsiGI	ACCGGT	2 cut(s)	280, 403
Asp700I	GAANNNNTTC	2 cut(s)	145, 365
Asp718I	GGTACC	1 cut(s)	484
AspLEI	GCGC	1 cut(s)	135
AspS9I	GGNCC	2 cut(s)	249, 597
AsuHPI	GGTGA	3 cut(s)	133, 230, 652
AvaII	GGWCC	2 cut(s)	249, 597
BamHI	GGATCC	2 cut(s)	50, 209
BanI	GGYRCC	1 cut(s)	484
BbvI	GCAGC	1 cut(s)	177
BccI	CCATC	2 cut(s)	17, 770
BceAI	ACGGC	1 cut(s)	29
BcgI	CGANNNNNNTGC	2 cut(s)	118, 152
BciT130I	CCWGG	2 cut(s)	568, 594
BcoDI	GTCTC	2 cut(s)	271, 289
BfmI	CTRYAG	1 cut(s)	492
BisI	GCNGC	2 cut(s)	166, 505
BlpI	GCTNAGC	1 cut(s)	414
BlsI	GCNGC	2 cut(s)	167, 506
Bme1390I	CCNGG	2 cut(s)	568, 594
Bme18I	GGWCC	2 cut(s)	249, 597
BmgBI	CACGTC	1 cut(s)	511
BmgT120I	GGNCC	2 cut(s)	249, 597
BmiI	GGNNCC	5 cut(s)	52, 211, 320, 486, 598
BmrFI	CCNGG	2 cut(s)	568, 594
Bpu1102I	GCTNAGC	1 cut(s)	414
BpuEI	CTTGAG	1 cut(s)	369
BsaI	GGTCTC	2 cut(s)	271, 289
BsaJI	CCNNGG	2 cut(s)	593, 615
BsaWI	WCCGGW	5 cut(s)	18, 118, 280, 403, 599
Bsc4I	CCNNNNNNNGG	3 cut(s)	350, 511, 599
Bse118I	RCCGGY	2 cut(s)	280, 403
Bse3DI	GCAATG	1 cut(s)	467
BseBI	CCWGG	2 cut(s)	568, 594
BseDI	CCNNGG	2 cut(s)	593, 615
BseLI	CCNNNNNNNGG	3 cut(s)	350, 511, 599
BseMI	GCAATG	1 cut(s)	467
BseMII	CTCAG	5 cut(s)	77, 104, 245, 337, 782
BseRI	GAGGAG	4 cut(s)	60, 202, 212, 219
BseXI	GCAGC	1 cut(s)	177
Bsh1236I	CGCG	3 cut(s)	135, 155, 507
Bsh1285I	CGRYCG	1 cut(s)	19
BshFI	GGCC	1 cut(s)	566
BshNI	GGYRCC	1 cut(s)	484
BshTI	ACCGGT	2 cut(s)	280, 403
BsiEI	CGRYCG	1 cut(s)	19
BsiSI	CCGG	8 cut(s)	19, 57, 119, 213, 281, 316, 404, 600
BslFI	GGGAC	1 cut(s)	610
BslI	CCNNNNNNNGG	3 cut(s)	350, 511, 599
BsmAI	GTCTC	2 cut(s)	271, 289
BsmFI	GGGAC	1 cut(s)	610
BsnI	GGCC	1 cut(s)	566
Bso31I	GGTCTC	2 cut(s)	271, 289
Bsp143I	GATC	3 cut(s)	50, 89, 209
Bsp1720I	GCTNAGC	1 cut(s)	414
Bsp19I	CCATGG	1 cut(s)	615
Bsp68I	TCGCGA	1 cut(s)	155
BspACI	CCGC	5 cut(s)	54, 216, 238, 505, 585
BspANI	GGCC	1 cut(s)	566
BspCNI	CTCAG	5 cut(s)	78, 105, 244, 336, 781
BspFNI	CGCG	3 cut(s)	135, 155, 507
BspLI	GGNNCC	5 cut(s)	52, 211, 320, 486, 598
BspPI	GGATC	5 cut(s)	45, 58, 84, 204, 217
BspT107I	GGYRCC	1 cut(s)	484
BspTNI	GGTCTC	2 cut(s)	271, 289
BsrDI	GCAATG	1 cut(s)	467
BsrFI	RCCGGY	2 cut(s)	280, 403
BssAI	RCCGGY	2 cut(s)	280, 403
BssECI	CCNNGG	2 cut(s)	593, 615
BssMI	GATC	3 cut(s)	50, 89, 209
BssT1I	CCWWGG	1 cut(s)	615
Bst2UI	CCWGG	2 cut(s)	568, 594
Bst4CI	ACNGT	2 cut(s)	484, 496
Bst6I	CTCTTC	1 cut(s)	515
BstAPI	GCANNNNNTGC	1 cut(s)	546
BstC8I	GCNNGC	5 cut(s)	131, 313, 331, 502, 679
BstDEI	CTNAG	7 cut(s)	86, 113, 231, 323, 414, 768, 783
BstDSI	CCRYGG	1 cut(s)	615
BstFNI	CGCG	3 cut(s)	135, 155, 507
BstHHI	GCGC	1 cut(s)	135
BstKTI	GATC	3 cut(s)	53, 92, 212
BstMAI	GTCTC	2 cut(s)	271, 289
BstMBI	GATC	3 cut(s)	50, 89, 209
BstMCI	CGRYCG	1 cut(s)	19
BstMWI	GCNNNNNNNGC	3 cut(s)	109, 271, 546
BstNI	CCWGG	2 cut(s)	568, 594
BstSCI	CCNGG	2 cut(s)	566, 592
BstSFI	CTRYAG	1 cut(s)	492
BstUI	CGCG	3 cut(s)	135, 155, 507
BstV1I	GCAGC	1 cut(s)	177
BstX2I	RGATCY	3 cut(s)	50, 89, 209
BstXI	CCANNNNNNTGG	1 cut(s)	689
BstYI	RGATCY	3 cut(s)	50, 89, 209
BsuRI	GGCC	1 cut(s)	566
BtgI	CCRYGG	1 cut(s)	615
BtrI	CACGTC	1 cut(s)	511
BtsIMutI	CAGTG	1 cut(s)	331
BtuMI	TCGCGA	1 cut(s)	155
Cac8I	GCNNGC	5 cut(s)	131, 313, 331, 502, 679
CfoI	GCGC	1 cut(s)	135
Cfr10I	RCCGGY	2 cut(s)	280, 403
Cfr13I	GGNCC	2 cut(s)	249, 597
CseI	GACGC	2 cut(s)	13, 124
Csp6I	GTAC	1 cut(s)	485
CspAI	ACCGGT	2 cut(s)	280, 403
CviAII	CATG	2 cut(s)	546, 616
CviQI	GTAC	1 cut(s)	485
DdeI	CTNAG	7 cut(s)	86, 113, 231, 323, 414, 768, 783
DpnI	GATC	3 cut(s)	52, 91, 211
DpnII	GATC	3 cut(s)	50, 89, 209
DrdI	GACNNNNNNGTC	2 cut(s)	23, 604
DseDI	GACNNNNNNGTC	2 cut(s)	23, 604
Eam1104I	CTCTTC	1 cut(s)	515
EarI	CTCTTC	1 cut(s)	515
EciI	GGCGGA	1 cut(s)	43
Eco130I	CCWWGG	1 cut(s)	615
Eco31I	GGTCTC	2 cut(s)	271, 289
Eco47I	GGWCC	2 cut(s)	249, 597
Eco57I	CTGAAG	1 cut(s)	728
EcoRII	CCWGG	2 cut(s)	566, 592
EcoT14I	CCWWGG	1 cut(s)	615
EcoT22I	ATGCAT	1 cut(s)	551
ErhI	CCWWGG	1 cut(s)	615
FaeI	CATG	2 cut(s)	549, 619
FaiI	YATR	7 cut(s)	547, 551, 577, 579, 583, 617, 754
FaqI	GGGAC	1 cut(s)	610
FatI	CATG	2 cut(s)	545, 615
FauI	CCCGC	1 cut(s)	578
FblI	GTMKAC	1 cut(s)	479
Fnu4HI	GCNGC	2 cut(s)	166, 505
Fsp4HI	GCNGC	2 cut(s)	166, 505
GlaI	GCGC	1 cut(s)	134
GluI	GCNGC	2 cut(s)	166, 505
HaeIII	GGCC	1 cut(s)	566
HapII	CCGG	8 cut(s)	19, 57, 119, 213, 281, 316, 404, 600
HgaI	GACGC	2 cut(s)	13, 124
HhaI	GCGC	1 cut(s)	135
Hin1II	CATG	2 cut(s)	549, 619
Hin6I	GCGC	1 cut(s)	133
HinP1I	GCGC	1 cut(s)	133
HinfI	GANTC	6 cut(s)	35, 115, 179, 226, 254, 427
HpaII	CCGG	8 cut(s)	19, 57, 119, 213, 281, 316, 404, 600
HphI	GGTGA	3 cut(s)	133, 230, 652
Hpy166II	GTNNAC	1 cut(s)	480
Hpy188III	TCNNGA	1 cut(s)	154
Hpy8I	GTNNAC	1 cut(s)	480
Hpy99I	CGWCG	9 cut(s)	29, 50, 103, 140, 155, 262, 265, 292, 512
HpyAV	CCTTC	3 cut(s)	15, 454, 556
HpyCH4III	ACNGT	2 cut(s)	484, 496
HpyCH4IV	ACGT	1 cut(s)	510
HpyCH4V	TGCA	8 cut(s)	129, 333, 347, 396, 472, 540, 549, 736
HpyF10VI	GCNNNNNNNGC	3 cut(s)	109, 271, 546
HpyF3I	CTNAG	7 cut(s)	86, 113, 231, 323, 414, 768, 783
HpySE526I	ACGT	1 cut(s)	510
Hsp92II	CATG	2 cut(s)	549, 619
HspAI	GCGC	1 cut(s)	133
KpnI	GGTACC	1 cut(s)	488
Kzo9I	GATC	3 cut(s)	50, 89, 209
LmnI	GCTCC	4 cut(s)	21, 189, 442, 514
Lsp1109I	GCAGC	1 cut(s)	177
MaeII	ACGT	1 cut(s)	510
MalI	GATC	3 cut(s)	52, 91, 211
MboI	GATC	3 cut(s)	50, 89, 209
MboII	GAAGA	3 cut(s)	138, 532, 734
MflI	RGATCY	3 cut(s)	50, 89, 209
MluCI	AATT	8 cut(s)	94, 141, 158, 354, 421, 643, 670, 749
MlyI	GAGTC	2 cut(s)	124, 220
MmeI	TCCRAC	4 cut(s)	28, 63, 118, 187
Mph1103I	ATGCAT	1 cut(s)	551
MroXI	GAANNNNTTC	2 cut(s)	145, 365
MspI	CCGG	8 cut(s)	19, 57, 119, 213, 281, 316, 404, 600
MspR9I	CCNGG	2 cut(s)	568, 594
MvaI	CCWGG	2 cut(s)	568, 594
MvnI	CGCG	3 cut(s)	135, 155, 507
MwoI	GCNNNNNNNGC	3 cut(s)	109, 271, 546
NcoI	CCATGG	1 cut(s)	615
NdeII	GATC	3 cut(s)	50, 89, 209
NlaIII	CATG	2 cut(s)	549, 619
NlaIV	GGNNCC	5 cut(s)	52, 211, 320, 486, 598
NmeAIII	GCCGAG	1 cut(s)	300
NruI	TCGCGA	1 cut(s)	155
NsiI	ATGCAT	1 cut(s)	551
PcsI	WCGNNNNNNNCGW	1 cut(s)	263
PdmI	GAANNNNTTC	2 cut(s)	145, 365
PfeI	GAWTC	4 cut(s)	35, 179, 254, 427
PinAI	ACCGGT	2 cut(s)	280, 403
PkrI	GCNGC	2 cut(s)	167, 506
PleI	GAGTC	2 cut(s)	123, 220
PpsI	GAGTC	2 cut(s)	123, 220
Psp6I	CCWGG	2 cut(s)	566, 592
PspGI	CCWGG	2 cut(s)	566, 592
PspN4I	GGNNCC	5 cut(s)	52, 211, 320, 486, 598
PspPI	GGNCC	2 cut(s)	249, 597
PsuI	RGATCY	3 cut(s)	50, 89, 209
RruI	TCGCGA	1 cut(s)	155
RsaI	GTAC	1 cut(s)	486
RsaNI	GTAC	1 cut(s)	485
SatI	GCNGC	2 cut(s)	166, 505
Sau3AI	GATC	3 cut(s)	50, 89, 209
Sau96I	GGNCC	2 cut(s)	249, 597
SchI	GAGTC	2 cut(s)	124, 220
ScrFI	CCNGG	2 cut(s)	568, 594
SetI	ASST	9 cut(s)	114, 204, 251, 324, 513, 636, 706, 718, 731
SfcI	CTRYAG	1 cut(s)	492
SinI	GGWCC	2 cut(s)	249, 597
SmlI	CTYRAG	1 cut(s)	384
SmoI	CTYRAG	1 cut(s)	384
Sse9I	AATT	8 cut(s)	94, 141, 158, 354, 421, 643, 670, 749
SsiI	CCGC	5 cut(s)	54, 216, 238, 505, 585
StyD4I	CCNGG	2 cut(s)	566, 592
StyI	CCWWGG	1 cut(s)	615
TaaI	ACNGT	2 cut(s)	484, 496
TaiI	ACGT	1 cut(s)	513
TaqI	TCGA	3 cut(s)	27, 33, 177
TasI	AATT	8 cut(s)	94, 141, 158, 354, 421, 643, 670, 749
TauI	GCSGC	1 cut(s)	507
TfiI	GAWTC	4 cut(s)	35, 179, 254, 427
TscAI	CASTG	1 cut(s)	331
TseI	GCWGC	1 cut(s)	165
TspDTI	ATGAA	3 cut(s)	122, 284, 311
TspGWI	ACGGA	2 cut(s)	94, 139
TspRI	CASTG	1 cut(s)	331
VpaK11BI	GGWCC	2 cut(s)	249, 597
XapI	RAATTY	2 cut(s)	141, 158
XmiI	GTMKAC	1 cut(s)	479
XmnI	GAANNNNTTC	2 cut(s)	145, 365
Zsp2I	ATGCAT	1 cut(s)	551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.