Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006255.1

Orthogroup ID

OG0002408

Physical Location & Seq

Genomic Coordinates Reverse (-)

732 .. 1868

Gene Structure 1137 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006255.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

atgccttccatcgtcgaccgcagcgtcgaactcgaatccaacgtcgtccgatccgtcggagtttctactcctccgaaacggaggctgagatcgaattcgtcgccgatgaagctgagtccggtaaaatgcaagcgcgtcggaatttcttccgtcgtgaaattacgcagagttgtggtcgaatcggagaggagcgtggaggaggtagtcggatccgacggtgatttgactcctcaaaagcggaagttgaagtccgattcgtcgtcgccgatgaagccgagaccggtctcgtcgccgatgaagtgtaaatcggctcgccggaaccatttggattggataggaattgagaagtgtttcagtcagaaaaagcctcaagccttttgcaaaccaccggttgttgctaagccgaattggaatcccagaggcaagccttgtttaaacaaactgggattaaattttgggagaaaatgtatgtccttatccaattttgcctgccagatacttggtaaataccaacctcaaaagaaagctaatggcaccacctccctgcaacttcttcagaaattatattctcaaaagcctcagtcagatgggactaagatgatgttgataatagttgatgagttggattacttaatgttagcaaagcaaggatggaggttaatttctaatccatcatcttatggcgacccggagaccggattaccacagcgccgcctccccaaggaaccctacacccgcgacactcggagtaagtgttttgggcctagaattcctcaaagagacaaggcctttaggttggaaagcaagaaatctataagctcgaaattcttgggcttgtatagtgggcttggctcgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0022402 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044786 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA_22 Cdc6_C

Protein Analysis

285

Amino Acids

31.94

Weight (kDa)

10.24

Isoelectric Point (pI)

61.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002408)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0117421 RchiOBHm_Chr2g0147571
rosa_laevigata	RLG00000009715 RLG00000036789
rosa_multiflora	Rmu_sc0005551.1_g000001 Rmu_sc0005551.1_g000002 Rmu_sc0006255.1_g000001 Rmu_sc0006255.1_g000006 Rmu_sc0006255.1_g000008 Rmu_sc0006368.1_g000001 Rmu_sc0008753.1_g000001 Rmu_sc0010335.1_g000001 Rmu_sc0010420.1_g000002 Rmu_sc0013459.1_g000003 Rmu_sc0029520.1_g000001 Rmu_sc0031364.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029450 Rroxscaffold_1G00029500 Rroxscaffold_1G00029570 Rroxscaffold_1G00029580 Rroxscaffold_1G00029590 Rroxscaffold_5G00379910 Rroxscaffold_7G00209950
rosa_rugosa	Rorug01G0060000 Rorug03G0369200.1 Rorug05G0426400 Rorug05G0426500 Rorug05G0426600
rosa_samantha	Rh1AG147300 Rh1BG061700 Rh1CG138600 Rh2BG280100 Rh2BG537700 Rh2CG258400 Rh2CG272200 Rh2DG275000 Rh2DG290600 Rh2DG294200 Rh2DG294400 Rh5BG473700 Rh7AG238100 Rh7CG254700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	23
AccB1I	GGYRCC	1 cut(s)	533
AccI	GTMKAC	1 cut(s)	15
AccII	CGCG	2 cut(s)	135, 738
AciI	CCGC	4 cut(s)	19, 238, 712, 736
AclWI	GGATC	3 cut(s)	45, 204, 217
AcsI	RAATTY	5 cut(s)	94, 141, 451, 768, 824
AcuI	CTGAAG	1 cut(s)	539
AfiI	CCNNNNNNNGG	2 cut(s)	695, 721
AgeI	ACCGGT	2 cut(s)	280, 388
AgsI	TTSAA	1 cut(s)	247
AluBI	AGCT	3 cut(s)	112, 527, 819
AluI	AGCT	3 cut(s)	112, 527, 819
Alw26I	GTCTC	4 cut(s)	271, 289, 686, 774
AlwI	GGATC	3 cut(s)	45, 204, 217
AoxI	GGCC	2 cut(s)	761, 786
ApeKI	GCWGC	1 cut(s)	21
ApoI	RAATTY	5 cut(s)	94, 141, 451, 768, 824
ArsI	GACNNNNNNTTYG	2 cut(s)	27, 59
AsiGI	ACCGGT	2 cut(s)	280, 388
Asp700I	GAANNNNTTC	2 cut(s)	145, 350
AspLEI	GCGC	2 cut(s)	135, 711
AspS9I	GGNCC	1 cut(s)	761
AsuC2I	CCSGG	1 cut(s)	689
AsuHPI	GGTGA	1 cut(s)	230
BamHI	GGATCC	1 cut(s)	209
BanI	GGYRCC	1 cut(s)	533
BbvI	GCAGC	1 cut(s)	33
BccI	CCATC	4 cut(s)	17, 581, 645, 679
BcgI	CGANNNNNNTGC	2 cut(s)	118, 152
BcnI	CCSGG	1 cut(s)	689
BcoDI	GTCTC	4 cut(s)	271, 289, 686, 774
BfaI	CTAG	1 cut(s)	765
BfoI	RGCGCY	1 cut(s)	712
BisI	GCNGC	2 cut(s)	22, 712
BlpI	GCTNAGC	1 cut(s)	399
BlsI	GCNGC	2 cut(s)	23, 713
Bme1390I	CCNGG	1 cut(s)	689
BmgT120I	GGNCC	1 cut(s)	761
BmiI	GGNNCC	4 cut(s)	211, 320, 535, 726
BmrFI	CCNGG	1 cut(s)	689
BmrI	ACTGGG	1 cut(s)	452
BmuI	ACTGGG	1 cut(s)	452
Bpu1102I	GCTNAGC	1 cut(s)	399
BpuEI	CTTGAG	1 cut(s)	354
BpuMI	CCSGG	1 cut(s)	689
BsaI	GGTCTC	3 cut(s)	271, 289, 686
BsaJI	CCNNGG	1 cut(s)	720
BsaWI	WCCGGW	4 cut(s)	118, 280, 388, 695
BsaXI	ACNNNNNCTCC	4 cut(s)	451, 481, 739, 769
Bsc4I	CCNNNNNNNGG	2 cut(s)	695, 721
Bse118I	RCCGGY	2 cut(s)	280, 388
Bse1I	ACTGG	1 cut(s)	447
BseDI	CCNNGG	1 cut(s)	720
BseGI	GGATG	1 cut(s)	656
BseLI	CCNNNNNNNGG	2 cut(s)	695, 721
BseMII	CTCAG	3 cut(s)	77, 104, 593
BseNI	ACTGG	1 cut(s)	447
BseRI	GAGGAG	4 cut(s)	60, 202, 212, 219
BseXI	GCAGC	1 cut(s)	33
Bsh1236I	CGCG	2 cut(s)	135, 738
Bsh1285I	CGRYCG	1 cut(s)	19
BshFI	GGCC	2 cut(s)	763, 788
BshNI	GGYRCC	1 cut(s)	533
BshTI	ACCGGT	2 cut(s)	280, 388
BsiEI	CGRYCG	1 cut(s)	19
BsiSI	CCGG	6 cut(s)	119, 281, 316, 389, 689, 696
BslFI	GGGAC	1 cut(s)	604
BslI	CCNNNNNNNGG	2 cut(s)	695, 721
BsmAI	GTCTC	4 cut(s)	271, 289, 686, 774
BsmFI	GGGAC	1 cut(s)	604
BsnI	GGCC	2 cut(s)	763, 788
Bso31I	GGTCTC	3 cut(s)	271, 289, 686
Bsp143I	GATC	3 cut(s)	50, 89, 209
Bsp1720I	GCTNAGC	1 cut(s)	399
BspACI	CCGC	4 cut(s)	19, 238, 712, 736
BspANI	GGCC	2 cut(s)	763, 788
BspCNI	CTCAG	3 cut(s)	78, 105, 592
BspFNI	CGCG	2 cut(s)	135, 738
BspLI	GGNNCC	4 cut(s)	211, 320, 535, 726
BspPI	GGATC	3 cut(s)	45, 204, 217
BspT107I	GGYRCC	1 cut(s)	533
BspTNI	GGTCTC	3 cut(s)	271, 289, 686
BsrFI	RCCGGY	2 cut(s)	280, 388
BsrI	ACTGG	1 cut(s)	447
BssAI	RCCGGY	2 cut(s)	280, 388
BssECI	CCNNGG	1 cut(s)	720
BssMI	GATC	3 cut(s)	50, 89, 209
BssT1I	CCWWGG	1 cut(s)	720
Bst4CI	ACNGT	1 cut(s)	218
BstC8I	GCNNGC	4 cut(s)	131, 313, 425, 490
BstDEI	CTNAG	5 cut(s)	86, 113, 399, 579, 594
BstENI	CCTNNNNNAGG	1 cut(s)	719
BstF5I	GGATG	1 cut(s)	656
BstFNI	CGCG	2 cut(s)	135, 738
BstH2I	RGCGCY	1 cut(s)	712
BstHHI	GCGC	2 cut(s)	135, 711
BstKTI	GATC	3 cut(s)	53, 92, 212
BstMAI	GTCTC	4 cut(s)	271, 289, 686, 774
BstMBI	GATC	3 cut(s)	50, 89, 209
BstMCI	CGRYCG	1 cut(s)	19
BstMWI	GCNNNNNNNGC	2 cut(s)	109, 271
BstSCI	CCNGG	1 cut(s)	687
BstUI	CGCG	2 cut(s)	135, 738
BstV1I	GCAGC	1 cut(s)	33
BstX2I	RGATCY	1 cut(s)	209
BstXI	CCANNNNNNTGG	1 cut(s)	500
BstYI	RGATCY	1 cut(s)	209
BsuRI	GGCC	2 cut(s)	763, 788
BtsCI	GGATG	1 cut(s)	656
Cac8I	GCNNGC	4 cut(s)	131, 313, 425, 490
CfoI	GCGC	2 cut(s)	135, 711
Cfr10I	RCCGGY	2 cut(s)	280, 388
Cfr13I	GGNCC	1 cut(s)	761
CseI	GACGC	2 cut(s)	13, 124
CspAI	ACCGGT	2 cut(s)	280, 388
DdeI	CTNAG	5 cut(s)	86, 113, 399, 579, 594
DpnI	GATC	3 cut(s)	52, 91, 211
DpnII	GATC	3 cut(s)	50, 89, 209
DraI	TTTAAA	1 cut(s)	435
DrdI	GACNNNNNNGTC	1 cut(s)	23
DseDI	GACNNNNNNGTC	1 cut(s)	23
Eco130I	CCWWGG	1 cut(s)	720
Eco147I	AGGCCT	1 cut(s)	788
Eco31I	GGTCTC	3 cut(s)	271, 289, 686
Eco57I	CTGAAG	1 cut(s)	539
EcoNI	CCTNNNNNAGG	1 cut(s)	719
EcoRI	GAATTC	2 cut(s)	94, 768
EcoT14I	CCWWGG	1 cut(s)	720
ErhI	CCWWGG	1 cut(s)	720
FaiI	YATR	5 cut(s)	470, 565, 681, 815, 840
FaqI	GGGAC	1 cut(s)	604
FauI	CCCGC	1 cut(s)	743
FblI	GTMKAC	1 cut(s)	15
Fnu4HI	GCNGC	2 cut(s)	22, 712
FokI	GGATG	1 cut(s)	663
Fsp4HI	GCNGC	2 cut(s)	22, 712
FspBI	CTAG	1 cut(s)	765
GlaI	GCGC	2 cut(s)	134, 710
GluI	GCNGC	2 cut(s)	22, 712
HaeII	RGCGCY	1 cut(s)	712
HaeIII	GGCC	2 cut(s)	763, 788
HapII	CCGG	6 cut(s)	119, 281, 316, 389, 689, 696
HgaI	GACGC	2 cut(s)	13, 124
HhaI	GCGC	2 cut(s)	135, 711
Hin6I	GCGC	2 cut(s)	133, 709
HinP1I	GCGC	2 cut(s)	133, 709
HincII	GTYRAC	1 cut(s)	16
HindII	GTYRAC	1 cut(s)	16
HinfI	GANTC	6 cut(s)	35, 115, 179, 226, 254, 412
HpaII	CCGG	6 cut(s)	119, 281, 316, 389, 689, 696
HphI	GGTGA	1 cut(s)	230
Hpy166II	GTNNAC	1 cut(s)	16
Hpy188III	TCNNGA	1 cut(s)	154
Hpy8I	GTNNAC	1 cut(s)	16
HpyAV	CCTTC	1 cut(s)	15
HpyCH4III	ACNGT	1 cut(s)	218
HpyCH4IV	ACGT	1 cut(s)	42
HpyCH4V	TGCA	3 cut(s)	129, 381, 547
HpyF10VI	GCNNNNNNNGC	2 cut(s)	109, 271
HpyF3I	CTNAG	5 cut(s)	86, 113, 399, 579, 594
HpySE526I	ACGT	1 cut(s)	42
HspAI	GCGC	2 cut(s)	133, 709
Kzo9I	GATC	3 cut(s)	50, 89, 209
LmnI	GCTCC	1 cut(s)	189
Lsp1109I	GCAGC	1 cut(s)	33
MaeI	CTAG	1 cut(s)	765
MaeII	ACGT	1 cut(s)	42
MalI	GATC	3 cut(s)	52, 91, 211
MboI	GATC	3 cut(s)	50, 89, 209
MboII	GAAGA	2 cut(s)	138, 545
MflI	RGATCY	1 cut(s)	209
MlyI	GAGTC	2 cut(s)	124, 220
MmeI	TCCRAC	7 cut(s)	37, 63, 118, 187, 237, 603, 777
MroXI	GAANNNNTTC	2 cut(s)	145, 350
MseI	TTAA	4 cut(s)	434, 449, 632, 659
MspI	CCGG	6 cut(s)	119, 281, 316, 389, 689, 696
MspR9I	CCNGG	1 cut(s)	689
MssI	GTTTAAAC	1 cut(s)	435
MvnI	CGCG	2 cut(s)	135, 738
MwoI	GCNNNNNNNGC	2 cut(s)	109, 271
NciI	CCSGG	1 cut(s)	689
NdeII	GATC	3 cut(s)	50, 89, 209
NlaIV	GGNNCC	4 cut(s)	211, 320, 535, 726
NmeAIII	GCCGAG	1 cut(s)	300
PceI	AGGCCT	1 cut(s)	788
PcsI	WCGNNNNNNNCGW	4 cut(s)	21, 39, 51, 263
PdmI	GAANNNNTTC	2 cut(s)	145, 350
PfeI	GAWTC	4 cut(s)	35, 179, 254, 412
PinAI	ACCGGT	2 cut(s)	280, 388
PkrI	GCNGC	2 cut(s)	23, 713
PleI	GAGTC	2 cut(s)	123, 220
PmeI	GTTTAAAC	1 cut(s)	435
PpsI	GAGTC	2 cut(s)	123, 220
PspN4I	GGNNCC	4 cut(s)	211, 320, 535, 726
PspPI	GGNCC	1 cut(s)	761
PsuI	RGATCY	1 cut(s)	209
SalI	GTCGAC	1 cut(s)	14
SaqAI	TTAA	4 cut(s)	434, 449, 632, 659
SatI	GCNGC	2 cut(s)	22, 712
Sau3AI	GATC	3 cut(s)	50, 89, 209
Sau96I	GGNCC	1 cut(s)	761
SchI	GAGTC	2 cut(s)	124, 220
ScrFI	CCNGG	1 cut(s)	689
SetI	ASST	9 cut(s)	45, 114, 204, 517, 529, 542, 659, 797, 821
SmlI	CTYRAG	1 cut(s)	369
SmoI	CTYRAG	1 cut(s)	369
SseBI	AGGCCT	1 cut(s)	788
SsiI	CCGC	4 cut(s)	19, 238, 712, 736
SspMI	CTAG	1 cut(s)	765
StuI	AGGCCT	1 cut(s)	788
StyD4I	CCNGG	1 cut(s)	687
StyI	CCWWGG	1 cut(s)	720
TaaI	ACNGT	1 cut(s)	218
TaiI	ACGT	1 cut(s)	45
TaqI	TCGA	6 cut(s)	15, 27, 33, 92, 177, 821
TauI	GCSGC	1 cut(s)	714
TfiI	GAWTC	4 cut(s)	35, 179, 254, 412
Tru1I	TTAA	4 cut(s)	434, 449, 632, 659
Tru9I	TTAA	4 cut(s)	434, 449, 632, 659
TseI	GCWGC	1 cut(s)	21
TspDTI	ATGAA	3 cut(s)	122, 284, 311
TspGWI	ACGGA	3 cut(s)	43, 94, 139
XagI	CCTNNNNNAGG	1 cut(s)	719
XapI	RAATTY	5 cut(s)	94, 141, 451, 768, 824
XmiI	GTMKAC	1 cut(s)	15
XmnI	GAANNNNTTC	2 cut(s)	145, 350
XspI	CTAG	1 cut(s)	765

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.