Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006255.1

Orthogroup ID

OG0002408

Physical Location & Seq

Genomic Coordinates Forward (+)

14120 .. 14500

Gene Structure 381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006255.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

atgccttccatcgccgaccgcagcgtcgaactcgaatccaacgccgtcgaatccgctggagtttctactcctccgaaacggagggtgagatccaattcgtcgccgatgaagctgagtccggtaaaatgcaagcgcgtcggaatttcgtccgtcgtgaaattactcagcgttgtcgtcgaatcggaggggagcgtggaggagctagtcggatccggtggtgatttgattcctcagaagcggaagttgaggtccgattcgtcgtcgccgatgaagccaagaccggtctcgtcgccgatgaagtgtaaatcggttcgccggaacctcagtgcttgcagcatcactcctgcaaatgtgagatttggattggatagtaagaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0022402 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044786 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA_22 Cdc6_C

Protein Analysis

126

Amino Acids

13.45

Weight (kDa)

10.24

Isoelectric Point (pI)

82.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002408)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0117421 RchiOBHm_Chr2g0147571
rosa_laevigata	RLG00000009715 RLG00000036789
rosa_multiflora	Rmu_sc0005551.1_g000001 Rmu_sc0005551.1_g000002 Rmu_sc0006255.1_g000001 Rmu_sc0006255.1_g000006 Rmu_sc0006255.1_g000008 Rmu_sc0006368.1_g000001 Rmu_sc0008753.1_g000001 Rmu_sc0010335.1_g000001 Rmu_sc0010420.1_g000002 Rmu_sc0013459.1_g000003 Rmu_sc0029520.1_g000001 Rmu_sc0031364.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029450 Rroxscaffold_1G00029500 Rroxscaffold_1G00029570 Rroxscaffold_1G00029580 Rroxscaffold_1G00029590 Rroxscaffold_5G00379910 Rroxscaffold_7G00209950
rosa_rugosa	Rorug01G0060000 Rorug03G0369200.1 Rorug05G0426400 Rorug05G0426500 Rorug05G0426600
rosa_samantha	Rh1AG147300 Rh1BG061700 Rh1CG138600 Rh2BG280100 Rh2BG537700 Rh2CG258400 Rh2CG272200 Rh2DG275000 Rh2DG290600 Rh2DG294200 Rh2DG294400 Rh5BG473700 Rh7AG238100 Rh7CG254700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	23
AccII	CGCG	1 cut(s)	135
AciI	CCGC	3 cut(s)	19, 54, 238
AclWI	GGATC	3 cut(s)	84, 204, 217
AcsI	RAATTY	1 cut(s)	141
AgeI	ACCGGT	1 cut(s)	280
AluBI	AGCT	2 cut(s)	112, 202
AluI	AGCT	2 cut(s)	112, 202
Alw26I	GTCTC	1 cut(s)	289
AlwI	GGATC	3 cut(s)	84, 204, 217
ApeKI	GCWGC	2 cut(s)	21, 333
ApoI	RAATTY	1 cut(s)	141
AsiGI	ACCGGT	1 cut(s)	280
AspLEI	GCGC	1 cut(s)	135
AspS9I	GGNCC	1 cut(s)	249
AsuHPI	GGTGA	2 cut(s)	97, 230
AvaII	GGWCC	1 cut(s)	249
BamHI	GGATCC	1 cut(s)	209
BbvI	GCAGC	2 cut(s)	33, 345
BccI	CCATC	1 cut(s)	17
BceAI	ACGGC	1 cut(s)	29
BcgI	CGANNNNNNTGC	2 cut(s)	118, 152
BcoDI	GTCTC	1 cut(s)	289
BfaI	CTAG	1 cut(s)	203
BisI	GCNGC	2 cut(s)	22, 334
BlsI	GCNGC	2 cut(s)	23, 335
Bme18I	GGWCC	1 cut(s)	249
BmgT120I	GGNCC	1 cut(s)	249
BmiI	GGNNCC	2 cut(s)	211, 320
BmsI	GCATC	1 cut(s)	345
BpmI	CTGGAG	1 cut(s)	78
BsaI	GGTCTC	1 cut(s)	289
BsaWI	WCCGGW	3 cut(s)	118, 212, 280
Bse118I	RCCGGY	1 cut(s)	280
BseMII	CTCAG	4 cut(s)	104, 178, 245, 337
BseRI	GAGGAG	2 cut(s)	60, 212
BseXI	GCAGC	2 cut(s)	33, 345
Bsh1236I	CGCG	1 cut(s)	135
Bsh1285I	CGRYCG	1 cut(s)	19
BshTI	ACCGGT	1 cut(s)	280
BsiEI	CGRYCG	1 cut(s)	19
BsiSI	CCGG	4 cut(s)	119, 213, 281, 316
BsmAI	GTCTC	1 cut(s)	289
Bso31I	GGTCTC	1 cut(s)	289
Bsp143I	GATC	2 cut(s)	89, 209
BspACI	CCGC	3 cut(s)	19, 54, 238
BspCNI	CTCAG	4 cut(s)	105, 177, 244, 336
BspFNI	CGCG	1 cut(s)	135
BspLI	GGNNCC	2 cut(s)	211, 320
BspPI	GGATC	3 cut(s)	84, 204, 217
BspTNI	GGTCTC	1 cut(s)	289
BsrFI	RCCGGY	1 cut(s)	280
BssAI	RCCGGY	1 cut(s)	280
BssMI	GATC	2 cut(s)	89, 209
BstC8I	GCNNGC	2 cut(s)	131, 331
BstDEI	CTNAG	4 cut(s)	113, 164, 231, 323
BstFNI	CGCG	1 cut(s)	135
BstHHI	GCGC	1 cut(s)	135
BstKTI	GATC	2 cut(s)	92, 212
BstMAI	GTCTC	1 cut(s)	289
BstMBI	GATC	2 cut(s)	89, 209
BstMCI	CGRYCG	1 cut(s)	19
BstMWI	GCNNNNNNNGC	2 cut(s)	109, 271
BstUI	CGCG	1 cut(s)	135
BstV1I	GCAGC	2 cut(s)	33, 345
BstX2I	RGATCY	2 cut(s)	89, 209
BstYI	RGATCY	2 cut(s)	89, 209
BtsIMutI	CAGTG	1 cut(s)	331
Cac8I	GCNNGC	2 cut(s)	131, 331
CfoI	GCGC	1 cut(s)	135
Cfr10I	RCCGGY	1 cut(s)	280
Cfr13I	GGNCC	1 cut(s)	249
CseI	GACGC	2 cut(s)	13, 124
CspAI	ACCGGT	1 cut(s)	280
CviJI	RGCY	3 cut(s)	112, 202, 274
CviKI_1	RGCY	3 cut(s)	112, 202, 274
DdeI	CTNAG	4 cut(s)	113, 164, 231, 323
DpnI	GATC	2 cut(s)	91, 211
DpnII	GATC	2 cut(s)	89, 209
DrdI	GACNNNNNNGTC	1 cut(s)	23
DseDI	GACNNNNNNGTC	1 cut(s)	23
Eco31I	GGTCTC	1 cut(s)	289
Eco47I	GGWCC	1 cut(s)	249
Fnu4HI	GCNGC	2 cut(s)	22, 334
Fsp4HI	GCNGC	2 cut(s)	22, 334
FspBI	CTAG	1 cut(s)	203
GlaI	GCGC	1 cut(s)	134
GluI	GCNGC	2 cut(s)	22, 334
GsuI	CTGGAG	1 cut(s)	78
HapII	CCGG	4 cut(s)	119, 213, 281, 316
HgaI	GACGC	2 cut(s)	13, 124
HhaI	GCGC	1 cut(s)	135
Hin6I	GCGC	1 cut(s)	133
HinP1I	GCGC	1 cut(s)	133
HinfI	GANTC	6 cut(s)	35, 50, 115, 179, 226, 254
HpaII	CCGG	4 cut(s)	119, 213, 281, 316
HphI	GGTGA	2 cut(s)	97, 230
Hpy188I	TCNGA	6 cut(s)	75, 140, 184, 209, 234, 253
Hpy188III	TCNNGA	1 cut(s)	154
Hpy99I	CGWCG	9 cut(s)	29, 50, 103, 140, 155, 179, 262, 265, 292
HpyAV	CCTTC	1 cut(s)	15
HpyCH4V	TGCA	3 cut(s)	129, 333, 347
HpyF10VI	GCNNNNNNNGC	2 cut(s)	109, 271
HpyF3I	CTNAG	4 cut(s)	113, 164, 231, 323
HspAI	GCGC	1 cut(s)	133
Kzo9I	GATC	2 cut(s)	89, 209
LmnI	GCTCC	2 cut(s)	189, 199
LpnPI	CCDG	6 cut(s)	42, 132, 226, 294, 329, 357
Lsp1109I	GCAGC	2 cut(s)	33, 345
LweI	GCATC	1 cut(s)	345
MaeI	CTAG	1 cut(s)	203
MalI	GATC	2 cut(s)	91, 211
MboI	GATC	2 cut(s)	89, 209
MflI	RGATCY	2 cut(s)	89, 209
MluCI	AATT	4 cut(s)	94, 141, 158, 376
MlyI	GAGTC	1 cut(s)	124
MmeI	TCCRAC	3 cut(s)	63, 118, 187
MnlI	CCTC	7 cut(s)	75, 81, 178, 190, 240, 240, 332
MspA1I	CMGCKG	1 cut(s)	56
MspI	CCGG	4 cut(s)	119, 213, 281, 316
MvnI	CGCG	1 cut(s)	135
MwoI	GCNNNNNNNGC	2 cut(s)	109, 271
NdeII	GATC	2 cut(s)	89, 209
NlaIV	GGNNCC	2 cut(s)	211, 320
PcsI	WCGNNNNNNNCGW	1 cut(s)	263
PfeI	GAWTC	5 cut(s)	35, 50, 179, 226, 254
PinAI	ACCGGT	1 cut(s)	280
PkrI	GCNGC	2 cut(s)	23, 335
PleI	GAGTC	1 cut(s)	123
PpsI	GAGTC	1 cut(s)	123
PspN4I	GGNNCC	2 cut(s)	211, 320
PspPI	GGNCC	1 cut(s)	249
PsuI	RGATCY	2 cut(s)	89, 209
SatI	GCNGC	2 cut(s)	22, 334
Sau3AI	GATC	2 cut(s)	89, 209
Sau96I	GGNCC	1 cut(s)	249
SchI	GAGTC	1 cut(s)	124
SetI	ASST	4 cut(s)	114, 204, 251, 324
SfaNI	GCATC	1 cut(s)	345
SinI	GGWCC	1 cut(s)	249
Sse9I	AATT	4 cut(s)	94, 141, 158, 376
SsiI	CCGC	3 cut(s)	19, 54, 238
SspMI	CTAG	1 cut(s)	203
TaqI	TCGA	4 cut(s)	27, 33, 48, 177
TasI	AATT	4 cut(s)	94, 141, 158, 376
TfiI	GAWTC	5 cut(s)	35, 50, 179, 226, 254
TscAI	CASTG	1 cut(s)	331
TseI	GCWGC	2 cut(s)	21, 333
TspDTI	ATGAA	3 cut(s)	122, 284, 311
TspGWI	ACGGA	2 cut(s)	94, 139
TspRI	CASTG	1 cut(s)	331
VpaK11BI	GGWCC	1 cut(s)	249
XapI	RAATTY	1 cut(s)	141
XspI	CTAG	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.