Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002408

Physical Location & Seq

Genomic Coordinates Forward (+)

38188021 .. 38188717

Gene Structure 697 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00029570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGCCTTCCATCGCCGACCGCAGCGTCGAACTCGAATCCAACGCCGTCGGATCCGCCGGAGTTTCTATTCCTTCGAAACGGAGGCCGAGATCCAATTCGTCGGCGATGAAGCCGAGTCCGGTGAAATGCAAGCGCGTCGGAATTTCTTCCGTCGTGAAATTACGCAGCGTTGTGGTCGAATCGGAGAGGAGCGTTGAGGAGGTAGTCGGATCCGGCGGTGATTTGACTCCTCGAAGCGGAAGTCGAGATAAGGAGCATATGAGGATAGTGAAGGAGGCATTGCACTTGTCTACGGTTCCTTCTGATTGCGTGCCGCGACGTGGAGCAAGAAGAGGGTTTTGGGGTTCTGCAAGTCATGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0022402 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044786 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA_22 Cdc6_C

Protein Analysis

120

Amino Acids

12.81

Weight (kDa)

10.58

Isoelectric Point (pI)

68.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002408)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0117421 RchiOBHm_Chr2g0147571
rosa_laevigata	RLG00000009715 RLG00000036789
rosa_multiflora	Rmu_sc0005551.1_g000001 Rmu_sc0005551.1_g000002 Rmu_sc0006255.1_g000001 Rmu_sc0006255.1_g000006 Rmu_sc0006255.1_g000008 Rmu_sc0006368.1_g000001 Rmu_sc0008753.1_g000001 Rmu_sc0010335.1_g000001 Rmu_sc0010420.1_g000002 Rmu_sc0013459.1_g000003 Rmu_sc0029520.1_g000001 Rmu_sc0031364.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029450 Rroxscaffold_1G00029500 Rroxscaffold_1G00029570 Rroxscaffold_1G00029580 Rroxscaffold_1G00029590 Rroxscaffold_5G00379910 Rroxscaffold_7G00209950
rosa_rugosa	Rorug01G0060000 Rorug03G0369200.1 Rorug05G0426400 Rorug05G0426500 Rorug05G0426600
rosa_samantha	Rh1AG147300 Rh1BG061700 Rh1CG138600 Rh2BG280100 Rh2BG537700 Rh2CG258400 Rh2CG272200 Rh2DG275000 Rh2DG290600 Rh2DG294200 Rh2DG294400 Rh5BG473700 Rh7AG238100 Rh7CG254700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	23
AccI	GTMKAC	1 cut(s)	290
AccII	CGCG	2 cut(s)	135, 316
AciI	CCGC	5 cut(s)	19, 54, 216, 237, 314
AclWI	GGATC	5 cut(s)	45, 58, 84, 204, 217
AcsI	RAATTY	1 cut(s)	141
AfiI	CCNNNNNNNGG	2 cut(s)	236, 320
AjiI	CACGTC	1 cut(s)	320
AjuI	GAANNNNNNNTTGG	2 cut(s)	322, 354
AlwI	GGATC	5 cut(s)	45, 58, 84, 204, 217
AoxI	GGCC	1 cut(s)	83
ApeKI	GCWGC	2 cut(s)	21, 165
ApoI	RAATTY	1 cut(s)	141
ArsI	GACNNNNNNTTYG	2 cut(s)	226, 258
Asp700I	GAANNNNTTC	1 cut(s)	145
AspLEI	GCGC	1 cut(s)	135
AsuHPI	GGTGA	2 cut(s)	133, 230
AsuII	TTCGAA	1 cut(s)	74
BamHI	GGATCC	2 cut(s)	50, 209
BbvI	GCAGC	2 cut(s)	33, 177
BccI	CCATC	1 cut(s)	17
BceAI	ACGGC	1 cut(s)	29
BcgI	CGANNNNNNTGC	2 cut(s)	118, 152
BisI	GCNGC	3 cut(s)	22, 166, 314
BlsI	GCNGC	3 cut(s)	23, 167, 315
BmgBI	CACGTC	1 cut(s)	320
BmiI	GGNNCC	3 cut(s)	52, 211, 297
Bpu14I	TTCGAA	1 cut(s)	74
BsaWI	WCCGGW	1 cut(s)	118
Bsc4I	CCNNNNNNNGG	2 cut(s)	236, 320
Bse3DI	GCAATG	1 cut(s)	278
BseLI	CCNNNNNNNGG	2 cut(s)	236, 320
BseMI	GCAATG	1 cut(s)	278
BseRI	GAGGAG	3 cut(s)	202, 212, 219
BseXI	GCAGC	2 cut(s)	33, 177
Bsh1236I	CGCG	2 cut(s)	135, 316
Bsh1285I	CGRYCG	1 cut(s)	19
BshFI	GGCC	1 cut(s)	85
BsiEI	CGRYCG	1 cut(s)	19
BsiSI	CCGG	3 cut(s)	57, 119, 213
BslI	CCNNNNNNNGG	2 cut(s)	236, 320
BsnI	GGCC	1 cut(s)	85
Bsp119I	TTCGAA	1 cut(s)	74
Bsp143I	GATC	3 cut(s)	50, 89, 209
BspACI	CCGC	5 cut(s)	19, 54, 216, 237, 314
BspANI	GGCC	1 cut(s)	85
BspFNI	CGCG	2 cut(s)	135, 316
BspLI	GGNNCC	3 cut(s)	52, 211, 297
BspPI	GGATC	5 cut(s)	45, 58, 84, 204, 217
BspT104I	TTCGAA	1 cut(s)	74
BsrDI	GCAATG	1 cut(s)	278
BssMI	GATC	3 cut(s)	50, 89, 209
Bst4CI	ACNGT	1 cut(s)	295
Bst6I	CTCTTC	1 cut(s)	325
BstAPI	GCANNNNNTGC	1 cut(s)	356
BstBI	TTCGAA	1 cut(s)	74
BstC8I	GCNNGC	2 cut(s)	131, 311
BstFNI	CGCG	2 cut(s)	135, 316
BstHHI	GCGC	1 cut(s)	135
BstKTI	GATC	3 cut(s)	53, 92, 212
BstMBI	GATC	3 cut(s)	50, 89, 209
BstMCI	CGRYCG	1 cut(s)	19
BstMWI	GCNNNNNNNGC	1 cut(s)	356
BstUI	CGCG	2 cut(s)	135, 316
BstV1I	GCAGC	2 cut(s)	33, 177
BstX2I	RGATCY	3 cut(s)	50, 89, 209
BstYI	RGATCY	3 cut(s)	50, 89, 209
BsuRI	GGCC	1 cut(s)	85
BtgZI	GCGATG	1 cut(s)	119
BtrI	CACGTC	1 cut(s)	320
Cac8I	GCNNGC	2 cut(s)	131, 311
CfoI	GCGC	1 cut(s)	135
CseI	GACGC	2 cut(s)	13, 124
CviAII	CATG	1 cut(s)	356
CviJI	RGCY	2 cut(s)	85, 112
CviKI_1	RGCY	2 cut(s)	85, 112
DpnI	GATC	3 cut(s)	52, 91, 211
DpnII	GATC	3 cut(s)	50, 89, 209
DrdI	GACNNNNNNGTC	1 cut(s)	23
DseDI	GACNNNNNNGTC	1 cut(s)	23
Eam1104I	CTCTTC	1 cut(s)	325
EarI	CTCTTC	1 cut(s)	325
EciI	GGCGGA	1 cut(s)	43
EcoT22I	ATGCAT	1 cut(s)	361
FaeI	CATG	1 cut(s)	359
FaiI	YATR	4 cut(s)	258, 260, 357, 361
FatI	CATG	1 cut(s)	355
FauNDI	CATATG	1 cut(s)	258
FblI	GTMKAC	1 cut(s)	290
Fnu4HI	GCNGC	3 cut(s)	22, 166, 314
Fsp4HI	GCNGC	3 cut(s)	22, 166, 314
GlaI	GCGC	1 cut(s)	134
GluI	GCNGC	3 cut(s)	22, 166, 314
HaeIII	GGCC	1 cut(s)	85
HapII	CCGG	3 cut(s)	57, 119, 213
HgaI	GACGC	2 cut(s)	13, 124
HhaI	GCGC	1 cut(s)	135
Hin1II	CATG	1 cut(s)	359
Hin6I	GCGC	1 cut(s)	133
HinP1I	GCGC	1 cut(s)	133
HinfI	GANTC	4 cut(s)	35, 115, 179, 226
HpaII	CCGG	3 cut(s)	57, 119, 213
HphI	GGTGA	2 cut(s)	133, 230
Hpy166II	GTNNAC	1 cut(s)	291
Hpy188I	TCNGA	5 cut(s)	50, 140, 184, 209, 304
Hpy188III	TCNNGA	2 cut(s)	154, 245
Hpy8I	GTNNAC	1 cut(s)	291
Hpy99I	CGWCG	6 cut(s)	29, 50, 103, 140, 155, 321
HpyAV	CCTTC	4 cut(s)	15, 81, 265, 309
HpyCH4III	ACNGT	1 cut(s)	295
HpyCH4IV	ACGT	1 cut(s)	319
HpyCH4V	TGCA	4 cut(s)	129, 283, 350, 359
HpyF10VI	GCNNNNNNNGC	1 cut(s)	356
HpySE526I	ACGT	1 cut(s)	319
Hsp92II	CATG	1 cut(s)	359
HspAI	GCGC	1 cut(s)	133
Kzo9I	GATC	3 cut(s)	50, 89, 209
LmnI	GCTCC	3 cut(s)	189, 253, 323
LpnPI	CCDG	3 cut(s)	70, 132, 226
Lsp1109I	GCAGC	2 cut(s)	33, 177
MaeII	ACGT	1 cut(s)	319
MalI	GATC	3 cut(s)	52, 91, 211
MboI	GATC	3 cut(s)	50, 89, 209
MboII	GAAGA	2 cut(s)	138, 342
MflI	RGATCY	3 cut(s)	50, 89, 209
MluCI	AATT	3 cut(s)	94, 141, 158
MlyI	GAGTC	2 cut(s)	124, 220
MmeI	TCCRAC	4 cut(s)	28, 63, 118, 187
MnlI	CCTC	8 cut(s)	75, 180, 190, 193, 240, 255, 268, 326
Mph1103I	ATGCAT	1 cut(s)	361
MroXI	GAANNNNTTC	1 cut(s)	145
MspI	CCGG	3 cut(s)	57, 119, 213
MvnI	CGCG	2 cut(s)	135, 316
MwoI	GCNNNNNNNGC	1 cut(s)	356
NdeI	CATATG	1 cut(s)	258
NdeII	GATC	3 cut(s)	50, 89, 209
NlaIII	CATG	1 cut(s)	359
NlaIV	GGNNCC	3 cut(s)	52, 211, 297
NmeAIII	GCCGAG	2 cut(s)	111, 138
NsiI	ATGCAT	1 cut(s)	361
NspV	TTCGAA	1 cut(s)	74
PdmI	GAANNNNTTC	1 cut(s)	145
PfeI	GAWTC	2 cut(s)	35, 179
PkrI	GCNGC	3 cut(s)	23, 167, 315
PleI	GAGTC	2 cut(s)	123, 220
PpsI	GAGTC	2 cut(s)	123, 220
PspN4I	GGNNCC	3 cut(s)	52, 211, 297
PsuI	RGATCY	3 cut(s)	50, 89, 209
SatI	GCNGC	3 cut(s)	22, 166, 314
Sau3AI	GATC	3 cut(s)	50, 89, 209
SchI	GAGTC	2 cut(s)	124, 220
SetI	ASST	2 cut(s)	204, 322
SfuI	TTCGAA	1 cut(s)	74
Sse9I	AATT	3 cut(s)	94, 141, 158
SsiI	CCGC	5 cut(s)	19, 54, 216, 237, 314
TaaI	ACNGT	1 cut(s)	295
TaiI	ACGT	1 cut(s)	322
TaqI	TCGA	6 cut(s)	27, 33, 74, 177, 232, 244
TasI	AATT	3 cut(s)	94, 141, 158
TauI	GCSGC	1 cut(s)	316
TfiI	GAWTC	2 cut(s)	35, 179
TseI	GCWGC	2 cut(s)	21, 165
TspDTI	ATGAA	1 cut(s)	122
TspGWI	ACGGA	2 cut(s)	94, 139
XapI	RAATTY	1 cut(s)	141
XmiI	GTMKAC	1 cut(s)	290
XmnI	GAANNNNTTC	1 cut(s)	145
Zsp2I	ATGCAT	1 cut(s)	361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.