Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013459.1

Orthogroup ID

OG0002408

Physical Location & Seq

Genomic Coordinates Forward (+)

16800 .. 18956

Gene Structure 2157 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013459.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

atgaatggcggttgcaccaatactcctcagaagtggaagttgaggtcggattcgttgtcgttgatgaagtcgagaccagtctcattgccaatgaagtgtaaattggcttgccggaacctcagtgcttgcaccaatattcctgcaaatggaattgagaagtatttcagtcagaaaaagcctcaagcctatcgcaaaccaccggttgttgttaagccgaactggaatcccagaggcaagccttataaggagcatatgaggatagtgaaggaggcattgcacttgtctacggttccctctagtgttgcgtgccgcgacgtggagcagaagaggtctttcgggtctggacgcccagccctagccggaagttggcgagaaaccaccggagttggcaggagactcgtcggagttggccggaggtcggtaggagacctcgctggagaggagagagaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0022402 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044786 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA_22 Cdc6_C

Protein Analysis

150

Amino Acids

16.65

Weight (kDa)

10.36

Isoelectric Point (pI)

57.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002408)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0117421 RchiOBHm_Chr2g0147571
rosa_laevigata	RLG00000009715 RLG00000036789
rosa_multiflora	Rmu_sc0005551.1_g000001 Rmu_sc0005551.1_g000002 Rmu_sc0006255.1_g000001 Rmu_sc0006255.1_g000006 Rmu_sc0006255.1_g000008 Rmu_sc0006368.1_g000001 Rmu_sc0008753.1_g000001 Rmu_sc0010335.1_g000001 Rmu_sc0010420.1_g000002 Rmu_sc0013459.1_g000003 Rmu_sc0029520.1_g000001 Rmu_sc0031364.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029450 Rroxscaffold_1G00029500 Rroxscaffold_1G00029570 Rroxscaffold_1G00029580 Rroxscaffold_1G00029590 Rroxscaffold_5G00379910 Rroxscaffold_7G00209950
rosa_rugosa	Rorug01G0060000 Rorug03G0369200.1 Rorug05G0426400 Rorug05G0426500 Rorug05G0426600
rosa_samantha	Rh1AG147300 Rh1BG061700 Rh1CG138600 Rh2BG280100 Rh2BG537700 Rh2CG258400 Rh2CG272200 Rh2DG275000 Rh2DG290600 Rh2DG294200 Rh2DG294400 Rh5BG473700 Rh7AG238100 Rh7CG254700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	243
AccI	GTMKAC	1 cut(s)	284
AccII	CGCG	1 cut(s)	312
AciI	CCGC	2 cut(s)	9, 310
AcoI	YGGCCR	1 cut(s)	409
AcyI	GRCGYC	1 cut(s)	346
AfiI	CCNNNNNNNGG	4 cut(s)	146, 316, 366, 418
AgeI	ACCGGT	1 cut(s)	199
AjiI	CACGTC	1 cut(s)	316
AjuI	GAANNNNNNNTTGG	2 cut(s)	86, 118
Alw26I	GTCTC	4 cut(s)	67, 85, 388, 420
AoxI	GGCC	1 cut(s)	409
AsiGI	ACCGGT	1 cut(s)	199
Asp700I	GAANNNNTTC	1 cut(s)	161
BcgI	CGANNNNNNTGC	2 cut(s)	379, 413
BcoDI	GTCTC	4 cut(s)	67, 85, 388, 420
BfaI	CTAG	2 cut(s)	297, 356
BisI	GCNGC	1 cut(s)	310
BlsI	GCNGC	1 cut(s)	311
BmgBI	CACGTC	1 cut(s)	316
BmiI	GGNNCC	2 cut(s)	116, 291
BpuEI	CTTGAG	1 cut(s)	165
BsaHI	GRCGYC	1 cut(s)	346
BsaI	GGTCTC	2 cut(s)	67, 420
BsaWI	WCCGGW	2 cut(s)	199, 380
BsaXI	ACNNNNNCTCC	2 cut(s)	7, 37
Bsc4I	CCNNNNNNNGG	4 cut(s)	146, 316, 366, 418
Bse118I	RCCGGY	1 cut(s)	199
Bse1I	ACTGG	2 cut(s)	77, 224
Bse3DI	GCAATG	2 cut(s)	83, 272
BseLI	CCNNNNNNNGG	4 cut(s)	146, 316, 366, 418
BseMI	GCAATG	2 cut(s)	83, 272
BseMII	CTCAG	2 cut(s)	41, 133
BseNI	ACTGG	2 cut(s)	77, 224
BseRI	GAGGAG	1 cut(s)	15
BseYI	CCCAGC	1 cut(s)	349
Bsh1236I	CGCG	1 cut(s)	312
BshFI	GGCC	1 cut(s)	411
BshTI	ACCGGT	1 cut(s)	199
BsiSI	CCGG	5 cut(s)	112, 200, 360, 381, 412
BslI	CCNNNNNNNGG	4 cut(s)	146, 316, 366, 418
BsmAI	GTCTC	4 cut(s)	67, 85, 388, 420
BsnI	GGCC	1 cut(s)	411
Bso31I	GGTCTC	2 cut(s)	67, 420
BspACI	CCGC	2 cut(s)	9, 310
BspANI	GGCC	1 cut(s)	411
BspCNI	CTCAG	2 cut(s)	40, 132
BspFNI	CGCG	1 cut(s)	312
BspLI	GGNNCC	2 cut(s)	116, 291
BspTNI	GGTCTC	2 cut(s)	67, 420
BsrDI	GCAATG	2 cut(s)	83, 272
BsrFI	RCCGGY	1 cut(s)	199
BsrI	ACTGG	2 cut(s)	77, 224
BssAI	RCCGGY	1 cut(s)	199
BssNI	GRCGYC	1 cut(s)	346
Bst4CI	ACNGT	1 cut(s)	289
Bst6I	CTCTTC	1 cut(s)	320
BstACI	GRCGYC	1 cut(s)	346
BstC8I	GCNNGC	4 cut(s)	109, 127, 236, 307
BstDEI	CTNAG	2 cut(s)	27, 119
BstFNI	CGCG	1 cut(s)	312
BstMAI	GTCTC	4 cut(s)	67, 85, 388, 420
BstUI	CGCG	1 cut(s)	312
BsuRI	GGCC	1 cut(s)	411
BtrI	CACGTC	1 cut(s)	316
BtsIMutI	CAGTG	1 cut(s)	127
Cac8I	GCNNGC	4 cut(s)	109, 127, 236, 307
Cfr10I	RCCGGY	1 cut(s)	199
CseI	GACGC	1 cut(s)	354
CspAI	ACCGGT	1 cut(s)	199
CspCI	CAANNNNNGTGG	2 cut(s)	367, 402
CviJI	RGCY	8 cut(s)	107, 178, 185, 214, 238, 353, 359, 411
CviKI_1	RGCY	8 cut(s)	107, 178, 185, 214, 238, 353, 359, 411
DdeI	CTNAG	2 cut(s)	27, 119
EaeI	YGGCCR	1 cut(s)	409
Eam1104I	CTCTTC	1 cut(s)	320
EarI	CTCTTC	1 cut(s)	320
Eco31I	GGTCTC	2 cut(s)	67, 420
FaiI	YATR	3 cut(s)	243, 252, 254
FauNDI	CATATG	1 cut(s)	252
FblI	GTMKAC	1 cut(s)	284
Fnu4HI	GCNGC	1 cut(s)	310
Fsp4HI	GCNGC	1 cut(s)	310
FspBI	CTAG	2 cut(s)	297, 356
GluI	GCNGC	1 cut(s)	310
GsaI	CCCAGC	1 cut(s)	353
HaeIII	GGCC	1 cut(s)	411
HapII	CCGG	5 cut(s)	112, 200, 360, 381, 412
HgaI	GACGC	1 cut(s)	354
Hin1I	GRCGYC	1 cut(s)	346
HinfI	GANTC	3 cut(s)	50, 223, 396
HpaII	CCGG	5 cut(s)	112, 200, 360, 381, 412
Hpy166II	GTNNAC	1 cut(s)	285
Hpy188I	TCNGA	4 cut(s)	30, 49, 171, 404
Hpy188III	TCNNGA	2 cut(s)	72, 342
Hpy8I	GTNNAC	1 cut(s)	285
Hpy99I	CGWCG	2 cut(s)	317, 404
HpyAV	CCTTC	1 cut(s)	259
HpyCH4III	ACNGT	1 cut(s)	289
HpyCH4IV	ACGT	1 cut(s)	315
HpyCH4V	TGCA	4 cut(s)	15, 129, 143, 277
HpyF3I	CTNAG	2 cut(s)	27, 119
HpySE526I	ACGT	1 cut(s)	315
Hsp92I	GRCGYC	1 cut(s)	346
LmnI	GCTCC	2 cut(s)	247, 319
MaeI	CTAG	2 cut(s)	297, 356
MaeII	ACGT	1 cut(s)	315
MboII	GAAGA	1 cut(s)	337
MluCI	AATT	2 cut(s)	101, 150
MlyI	GAGTC	1 cut(s)	390
MmeI	TCCRAC	2 cut(s)	27, 382
MroXI	GAANNNNTTC	1 cut(s)	161
MseI	TTAA	1 cut(s)	210
MspI	CCGG	5 cut(s)	112, 200, 360, 381, 412
MvnI	CGCG	1 cut(s)	312
NdeI	CATATG	1 cut(s)	252
NlaIV	GGNNCC	2 cut(s)	116, 291
PdmI	GAANNNNTTC	1 cut(s)	161
PfeI	GAWTC	2 cut(s)	50, 223
PinAI	ACCGGT	1 cut(s)	199
PkrI	GCNGC	1 cut(s)	311
PleI	GAGTC	1 cut(s)	390
PpsI	GAGTC	1 cut(s)	390
PsiI	TTATAA	1 cut(s)	243
PspFI	CCCAGC	1 cut(s)	349
PspN4I	GGNNCC	2 cut(s)	116, 291
SaqAI	TTAA	1 cut(s)	210
SatI	GCNGC	1 cut(s)	310
SchI	GAGTC	1 cut(s)	390
SetI	ASST	6 cut(s)	47, 120, 318, 332, 419, 432
SmlI	CTYRAG	1 cut(s)	180
SmoI	CTYRAG	1 cut(s)	180
Sse9I	AATT	2 cut(s)	101, 150
SsiI	CCGC	2 cut(s)	9, 310
SspI	AATATT	1 cut(s)	136
SspMI	CTAG	2 cut(s)	297, 356
TaaI	ACNGT	1 cut(s)	289
TaiI	ACGT	1 cut(s)	318
TaqI	TCGA	1 cut(s)	71
TasI	AATT	2 cut(s)	101, 150
TauI	GCSGC	1 cut(s)	312
TfiI	GAWTC	2 cut(s)	50, 223
Tru1I	TTAA	1 cut(s)	210
Tru9I	TTAA	1 cut(s)	210
TscAI	CASTG	1 cut(s)	127
TspDTI	ATGAA	3 cut(s)	17, 80, 107
TspRI	CASTG	1 cut(s)	127
XmiI	GTMKAC	1 cut(s)	284
XmnI	GAANNNNTTC	1 cut(s)	161
XspI	CTAG	2 cut(s)	297, 356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.