Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005551.1

Orthogroup ID

OG0002408

Physical Location & Seq

Genomic Coordinates Forward (+)

2034 .. 2414

Gene Structure 381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005551.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

atgccatccatcgccaaccgcagcgtcgaactcgaatccaacgccgtcggatccgccggagttgctactcctccgaaacggaggctgagatccaattcgtcgccgatgaagctgagtccggtgaaatgcaagcgcgtcagaatttcttccgttgcgaaattacgcagcgttgtggtcgaatcggagaggagcatggaggaggtaggcggatccagcggtgatttgactactcagaagcggaagttgaggtccgattcgtcgtcgccgatgaagccgagaccggtctcgtcgtcgatgaagtttaaatctgctcgccggaacctcagtgcttgcagcagcactcctgcaaatgtgagatttggattggatagtaagaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0022402 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044786 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA_22 Cdc6_C

Protein Analysis

126

Amino Acids

13.57

Weight (kDa)

11.34

Isoelectric Point (pI)

92.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002408)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0117421 RchiOBHm_Chr2g0147571
rosa_laevigata	RLG00000009715 RLG00000036789
rosa_multiflora	Rmu_sc0005551.1_g000001 Rmu_sc0005551.1_g000002 Rmu_sc0006255.1_g000001 Rmu_sc0006255.1_g000006 Rmu_sc0006255.1_g000008 Rmu_sc0006368.1_g000001 Rmu_sc0008753.1_g000001 Rmu_sc0010335.1_g000001 Rmu_sc0010420.1_g000002 Rmu_sc0013459.1_g000003 Rmu_sc0029520.1_g000001 Rmu_sc0031364.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029450 Rroxscaffold_1G00029500 Rroxscaffold_1G00029570 Rroxscaffold_1G00029580 Rroxscaffold_1G00029590 Rroxscaffold_5G00379910 Rroxscaffold_7G00209950
rosa_rugosa	Rorug01G0060000 Rorug03G0369200.1 Rorug05G0426400 Rorug05G0426500 Rorug05G0426600
rosa_samantha	Rh1AG147300 Rh1BG061700 Rh1CG138600 Rh2BG280100 Rh2BG537700 Rh2CG258400 Rh2CG272200 Rh2DG275000 Rh2DG290600 Rh2DG294200 Rh2DG294400 Rh5BG473700 Rh7AG238100 Rh7CG254700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	135
AciI	CCGC	5 cut(s)	19, 54, 207, 216, 238
AclWI	GGATC	5 cut(s)	45, 58, 84, 204, 217
AcsI	RAATTY	1 cut(s)	141
AgeI	ACCGGT	1 cut(s)	280
AluBI	AGCT	1 cut(s)	112
AluI	AGCT	1 cut(s)	112
Alw26I	GTCTC	2 cut(s)	271, 289
AlwI	GGATC	5 cut(s)	45, 58, 84, 204, 217
ApeKI	GCWGC	4 cut(s)	21, 165, 333, 336
ApoI	RAATTY	1 cut(s)	141
AsiGI	ACCGGT	1 cut(s)	280
Asp700I	GAANNNNTTC	1 cut(s)	145
AspLEI	GCGC	1 cut(s)	135
AspS9I	GGNCC	1 cut(s)	249
AsuHPI	GGTGA	2 cut(s)	133, 230
AvaII	GGWCC	1 cut(s)	249
BamHI	GGATCC	2 cut(s)	50, 209
BbvI	GCAGC	4 cut(s)	33, 177, 345, 348
BccI	CCATC	2 cut(s)	13, 17
BceAI	ACGGC	1 cut(s)	29
BcoDI	GTCTC	2 cut(s)	271, 289
BisI	GCNGC	4 cut(s)	22, 166, 334, 337
BlsI	GCNGC	4 cut(s)	23, 167, 335, 338
Bme18I	GGWCC	1 cut(s)	249
BmgT120I	GGNCC	1 cut(s)	249
BmiI	GGNNCC	3 cut(s)	52, 211, 320
BsaI	GGTCTC	2 cut(s)	271, 289
BsaWI	WCCGGW	2 cut(s)	118, 280
Bse118I	RCCGGY	1 cut(s)	280
BseGI	GGATG	1 cut(s)	5
BseMII	CTCAG	4 cut(s)	77, 104, 245, 337
BseRI	GAGGAG	3 cut(s)	60, 202, 212
BseXI	GCAGC	4 cut(s)	33, 177, 345, 348
Bsh1236I	CGCG	1 cut(s)	135
BshTI	ACCGGT	1 cut(s)	280
BsiSI	CCGG	4 cut(s)	57, 119, 281, 316
BsmAI	GTCTC	2 cut(s)	271, 289
Bso31I	GGTCTC	2 cut(s)	271, 289
Bsp143I	GATC	3 cut(s)	50, 89, 209
BspACI	CCGC	5 cut(s)	19, 54, 207, 216, 238
BspCNI	CTCAG	4 cut(s)	78, 105, 244, 336
BspFNI	CGCG	1 cut(s)	135
BspLI	GGNNCC	3 cut(s)	52, 211, 320
BspPI	GGATC	5 cut(s)	45, 58, 84, 204, 217
BspTNI	GGTCTC	2 cut(s)	271, 289
BsrFI	RCCGGY	1 cut(s)	280
BssAI	RCCGGY	1 cut(s)	280
BssMI	GATC	3 cut(s)	50, 89, 209
BstC8I	GCNNGC	3 cut(s)	131, 313, 331
BstDEI	CTNAG	4 cut(s)	86, 113, 231, 323
BstF5I	GGATG	1 cut(s)	5
BstFNI	CGCG	1 cut(s)	135
BstHHI	GCGC	1 cut(s)	135
BstKTI	GATC	3 cut(s)	53, 92, 212
BstMAI	GTCTC	2 cut(s)	271, 289
BstMBI	GATC	3 cut(s)	50, 89, 209
BstMWI	GCNNNNNNNGC	4 cut(s)	62, 109, 213, 271
BstUI	CGCG	1 cut(s)	135
BstV1I	GCAGC	4 cut(s)	33, 177, 345, 348
BstX2I	RGATCY	3 cut(s)	50, 89, 209
BstYI	RGATCY	3 cut(s)	50, 89, 209
BtsCI	GGATG	1 cut(s)	5
BtsIMutI	CAGTG	1 cut(s)	331
Cac8I	GCNNGC	3 cut(s)	131, 313, 331
CfoI	GCGC	1 cut(s)	135
Cfr10I	RCCGGY	1 cut(s)	280
Cfr13I	GGNCC	1 cut(s)	249
CseI	GACGC	2 cut(s)	13, 124
CspAI	ACCGGT	1 cut(s)	280
CviAII	CATG	1 cut(s)	193
CviJI	RGCY	3 cut(s)	85, 112, 274
CviKI_1	RGCY	3 cut(s)	85, 112, 274
DdeI	CTNAG	4 cut(s)	86, 113, 231, 323
DpnI	GATC	3 cut(s)	52, 91, 211
DpnII	GATC	3 cut(s)	50, 89, 209
DraI	TTTAAA	1 cut(s)	304
EciI	GGCGGA	2 cut(s)	43, 222
Eco31I	GGTCTC	2 cut(s)	271, 289
Eco47I	GGWCC	1 cut(s)	249
FaeI	CATG	1 cut(s)	196
FaiI	YATR	1 cut(s)	194
FatI	CATG	1 cut(s)	192
Fnu4HI	GCNGC	4 cut(s)	22, 166, 334, 337
Fsp4HI	GCNGC	4 cut(s)	22, 166, 334, 337
GlaI	GCGC	1 cut(s)	134
GluI	GCNGC	4 cut(s)	22, 166, 334, 337
HapII	CCGG	4 cut(s)	57, 119, 281, 316
HgaI	GACGC	2 cut(s)	13, 124
HhaI	GCGC	1 cut(s)	135
Hin1II	CATG	1 cut(s)	196
Hin6I	GCGC	1 cut(s)	133
HinP1I	GCGC	1 cut(s)	133
HinfI	GANTC	4 cut(s)	35, 115, 179, 254
HpaII	CCGG	4 cut(s)	57, 119, 281, 316
HphI	GGTGA	2 cut(s)	133, 230
Hpy188I	TCNGA	6 cut(s)	50, 75, 140, 184, 234, 253
Hpy99I	CGWCG	7 cut(s)	29, 50, 103, 262, 265, 292, 295
HpyCH4V	TGCA	3 cut(s)	129, 333, 347
HpyF10VI	GCNNNNNNNGC	4 cut(s)	62, 109, 213, 271
HpyF3I	CTNAG	4 cut(s)	86, 113, 231, 323
Hsp92II	CATG	1 cut(s)	196
HspAI	GCGC	1 cut(s)	133
Kzo9I	GATC	3 cut(s)	50, 89, 209
LmnI	GCTCC	1 cut(s)	189
LpnPI	CCDG	6 cut(s)	70, 132, 226, 294, 329, 357
Lsp1109I	GCAGC	4 cut(s)	33, 177, 345, 348
MalI	GATC	3 cut(s)	52, 91, 211
MboI	GATC	3 cut(s)	50, 89, 209
MboII	GAAGA	1 cut(s)	138
MflI	RGATCY	3 cut(s)	50, 89, 209
MluCI	AATT	4 cut(s)	94, 141, 158, 376
MlyI	GAGTC	1 cut(s)	124
MmeI	TCCRAC	2 cut(s)	28, 63
MnlI	CCTC	7 cut(s)	75, 81, 180, 190, 193, 240, 332
MroXI	GAANNNNTTC	1 cut(s)	145
MseI	TTAA	1 cut(s)	303
MspA1I	CMGCKG	1 cut(s)	216
MspI	CCGG	4 cut(s)	57, 119, 281, 316
MvnI	CGCG	1 cut(s)	135
MwoI	GCNNNNNNNGC	4 cut(s)	62, 109, 213, 271
NdeII	GATC	3 cut(s)	50, 89, 209
NlaIII	CATG	1 cut(s)	196
NlaIV	GGNNCC	3 cut(s)	52, 211, 320
NmeAIII	GCCGAG	1 cut(s)	300
PcsI	WCGNNNNNNNCGW	1 cut(s)	263
PdmI	GAANNNNTTC	1 cut(s)	145
PfeI	GAWTC	3 cut(s)	35, 179, 254
PinAI	ACCGGT	1 cut(s)	280
PkrI	GCNGC	4 cut(s)	23, 167, 335, 338
PleI	GAGTC	1 cut(s)	123
PpsI	GAGTC	1 cut(s)	123
PspN4I	GGNNCC	3 cut(s)	52, 211, 320
PspPI	GGNCC	1 cut(s)	249
PsuI	RGATCY	3 cut(s)	50, 89, 209
SaqAI	TTAA	1 cut(s)	303
SatI	GCNGC	4 cut(s)	22, 166, 334, 337
Sau3AI	GATC	3 cut(s)	50, 89, 209
Sau96I	GGNCC	1 cut(s)	249
SchI	GAGTC	1 cut(s)	124
SetI	ASST	4 cut(s)	114, 204, 251, 324
SinI	GGWCC	1 cut(s)	249
Sse9I	AATT	4 cut(s)	94, 141, 158, 376
SsiI	CCGC	5 cut(s)	19, 54, 207, 216, 238
TaqI	TCGA	4 cut(s)	27, 33, 177, 293
TasI	AATT	4 cut(s)	94, 141, 158, 376
TfiI	GAWTC	3 cut(s)	35, 179, 254
Tru1I	TTAA	1 cut(s)	303
Tru9I	TTAA	1 cut(s)	303
TscAI	CASTG	1 cut(s)	331
TseI	GCWGC	4 cut(s)	21, 165, 333, 336
TspDTI	ATGAA	3 cut(s)	122, 284, 311
TspGWI	ACGGA	2 cut(s)	94, 139
TspRI	CASTG	1 cut(s)	331
VpaK11BI	GGWCC	1 cut(s)	249
XapI	RAATTY	1 cut(s)	141
XmnI	GAANNNNTTC	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.