Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002408

Physical Location & Seq

Genomic Coordinates Reverse (-)

59236332 .. 59240771

Gene Structure 4440 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0426600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1359 bp

ATGAAGCAGCAGCAGCAACATCATCTGGGTTTTGAAGAACCACCAAGTAGCAGTAAGGCGAGTCTATTGATTCGTCACCTTCCAGAAGCCATTCCTGAAGAGACCCTGTTCCGCTTACTGTCCCACTATGGCGCTTCTTCTGTCCGCTCTTGCTCTCCTACCGGCAGGTTGAGAAATTGTGCTTTTGTGGATTTCCAAAACGAAGGCTTGGCTTACCAAGCACAGCGTCAGTTGAATGGGCTGAGGTTTCTTGGGAAGGTGTTAAAAGTGGAGAGGGCTACTAGCAATAGTGATAAGCCATTGCAGGATGGCAACAAGGATTCGGTTTCTGTGCCTCCCACTTCCACGTCATCTTCGGGGTACAATCCTACCGTCAAAAGGGAGACTCGGGAAACTGAAGTTTCTTCAAGATCAGAGCCTATTGCCCCGAGGCTTGGTGTAGATTACTGCTTTCCTCCTCACCTTGAGTATGCTTACCCACCACCAGATGGAAATATTCTGACCAACGTTGTAAATGCTCTTATTGCTGTTCCTCGCTTTTATACTCAGGTTTTGCACTTGATGAATAAAATGAATATTCCAGCTCCATTTCGCATGGCTCTTCCCTCTCCACCTCTACCACCTGCAGCTCCCGTGCCATTTCCCCCACCTCCCCCTCCTCTAGCTGCAAAGCCTCCCTTAGCAGATATATCAAGTGACGAGTCTGAAATGGAGTCTTCGGATGAGGAGGCCTCTACAGGAGCTTCAAGAGGAAAGAAGCGTGTCAAACGGGAATCTATTCTCGGTCCTGCAGTTGATAAAGGTGTAGCACATGAAAATGTTGGATTGAAACAAGCTATTCTAGTCCCAAAAGAGAAGCCAATGATAAAGAAGAAGAATCCTCTGCTACAGATAACATTTTCCCAGAAAGTTGTTAACATTGAGCACAAAGATGTTAGCACTACCAAAGAAGAAGAGCTTCCAGAAACTGAGAGTTCAGCTATTAACCCTTTTGCAAATCCAGAAGAACTAGAAAGAGGAAAGTTGCCTCCAGAAGAAATATTATCGCTTCCAATGTTTAAGAACTATACTGCCGGGACTCCTGCCCCCGTGTTGTATATAAAGAACTTGGCAAAGGACATTGTTGCTGATGACTTCTACTATATATTTGGGTCATTATTTGGAAGCTTTGATGCGGCCAAATCTGGTCTGAGCGTGAAGCTTATGCAGGAAGGACGAATGAGGGGCCAAGCTTTCGTAACATTTCCTTCAGTTGAACAAAGCCAATATGCTTTGAATCTAGTGAATGGGTATGTGTTCAAAGGCAAACCAATGATCATCCAGTTTGGCCGTAACCCTGCAGCTGTTAAAGCAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0022402 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044786 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA_22 Cdc6_C

Protein Analysis

452

Amino Acids

49.63

Weight (kDa)

8.69

Isoelectric Point (pI)

60.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	22 - 89	1.9e-10	RNA recognition motif
RRM_1	PF00076	365 - 437	9.7e-09	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002408)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0117421 RchiOBHm_Chr2g0147571
rosa_laevigata	RLG00000009715 RLG00000036789
rosa_multiflora	Rmu_sc0005551.1_g000001 Rmu_sc0005551.1_g000002 Rmu_sc0006255.1_g000001 Rmu_sc0006255.1_g000006 Rmu_sc0006255.1_g000008 Rmu_sc0006368.1_g000001 Rmu_sc0008753.1_g000001 Rmu_sc0010335.1_g000001 Rmu_sc0010420.1_g000002 Rmu_sc0013459.1_g000003 Rmu_sc0029520.1_g000001 Rmu_sc0031364.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029450 Rroxscaffold_1G00029500 Rroxscaffold_1G00029570 Rroxscaffold_1G00029580 Rroxscaffold_1G00029590 Rroxscaffold_5G00379910 Rroxscaffold_7G00209950
rosa_rugosa	Rorug01G0060000 Rorug03G0369200.1 Rorug05G0426400 Rorug05G0426500 Rorug05G0426600
rosa_samantha	Rh1AG147300 Rh1BG061700 Rh1CG138600 Rh2BG280100 Rh2BG537700 Rh2CG258400 Rh2CG272200 Rh2DG275000 Rh2DG290600 Rh2DG294200 Rh2DG294400 Rh5BG473700 Rh7AG238100 Rh7CG254700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	631
Acc36I	ACCTGC	2 cut(s)	156, 631
AccB7I	CCANNNNNTGG	1 cut(s)	488
AccBSI	CCGCTC	1 cut(s)	147
AciI	CCGC	3 cut(s)	112, 145, 1175
AclI	AACGTT	1 cut(s)	507
AcoI	YGGCCR	2 cut(s)	1176, 1327
AcuI	CTGAAG	3 cut(s)	117, 417, 1233
AfaI	GTAC	1 cut(s)	362
AfiI	CCNNNNNNNGG	3 cut(s)	378, 434, 488
AgsI	TTSAA	8 cut(s)	35, 235, 408, 747, 829, 1256, 1276, 1300
AjiI	CACGTC	1 cut(s)	348
Alw21I	GWGCWC	1 cut(s)	927
Alw26I	GTCTC	2 cut(s)	95, 377
AlwNI	CAGNNNCTG	1 cut(s)	968
Ama87I	CYCGRG	2 cut(s)	387, 427
AoxI	GGCC	4 cut(s)	729, 1176, 1225, 1327
ApeKI	GCWGC	7 cut(s)	7, 10, 13, 626, 665, 1340, 1352
Asp700I	GAANNNNTTC	3 cut(s)	90, 777, 957
AspLEI	GCGC	1 cut(s)	134
AspS9I	GGNCC	2 cut(s)	785, 1225
AsuC2I	CCSGG	1 cut(s)	1075
AsuHPI	GGTGA	2 cut(s)	68, 452
AvaI	CYCGRG	2 cut(s)	387, 427
AvaII	GGWCC	1 cut(s)	785
BbsI	GAAGAC	1 cut(s)	708
Bbv12I	GWGCWC	1 cut(s)	927
BbvCI	CCTCAGC	1 cut(s)	242
BbvI	GCAGC	6 cut(s)	19, 22, 25, 638, 652, 1352
BccI	CCATC	2 cut(s)	302, 482
BceAI	ACGGC	1 cut(s)	1314
BclI	TGATCA	1 cut(s)	1314
BcnI	CCSGG	1 cut(s)	1075
BcoDI	GTCTC	2 cut(s)	95, 377
BfaI	CTAG	5 cut(s)	282, 662, 842, 1010, 1280
BfmI	CTRYAG	5 cut(s)	624, 735, 789, 887, 1338
BfoI	RGCGCY	1 cut(s)	135
BfuAI	ACCTGC	2 cut(s)	156, 631
BisI	GCNGC	8 cut(s)	8, 11, 14, 627, 666, 1176, 1341, 1353
BlsI	GCNGC	8 cut(s)	9, 12, 15, 628, 667, 1177, 1342, 1354
Bme1390I	CCNGG	1 cut(s)	1075
Bme18I	GGWCC	1 cut(s)	785
BmeT110I	CYCGRG	2 cut(s)	387, 427
BmgBI	CACGTC	1 cut(s)	348
BmgT120I	GGNCC	2 cut(s)	785, 1225
BmiI	GGNNCC	1 cut(s)	1226
BmrFI	CCNGG	1 cut(s)	1075
BmsI	GCATC	1 cut(s)	1162
BpiI	GAAGAC	1 cut(s)	708
BplI	GAGNNNNNCTC	2 cut(s)	716, 748
BpmI	CTGGAG	1 cut(s)	1014
Bpu10I	CCTNAGC	2 cut(s)	242, 679
BpuEI	CTTGAG	1 cut(s)	485
BpuMI	CCSGG	1 cut(s)	1075
BsaI	GGTCTC	1 cut(s)	95
BsaJI	CCNNGG	1 cut(s)	428
Bsc4I	CCNNNNNNNGG	3 cut(s)	378, 434, 488
Bse118I	RCCGGY	1 cut(s)	161
Bse1I	ACTGG	1 cut(s)	1321
Bse3DI	GCAATG	1 cut(s)	299
BseDI	CCNNGG	1 cut(s)	428
BseGI	GGATG	3 cut(s)	313, 727, 1317
BseLI	CCNNNNNNNGG	3 cut(s)	378, 434, 488
BseMI	GCAATG	1 cut(s)	299
BseMII	CTCAG	4 cut(s)	233, 560, 960, 1181
BseNI	ACTGG	1 cut(s)	1321
BseRI	GAGGAG	3 cut(s)	447, 648, 740
BseXI	GCAGC	6 cut(s)	19, 22, 25, 638, 652, 1352
BshFI	GGCC	4 cut(s)	731, 1178, 1227, 1329
BsiHKAI	GWGCWC	1 cut(s)	927
BsiHKCI	CYCGRG	2 cut(s)	387, 427
BsiSI	CCGG	2 cut(s)	162, 1074
BslFI	GGGAC	3 cut(s)	106, 830, 1090
BslI	CCNNNNNNNGG	3 cut(s)	378, 434, 488
BsmAI	GTCTC	2 cut(s)	95, 377
BsmFI	GGGAC	3 cut(s)	106, 830, 1090
BsnI	GGCC	4 cut(s)	731, 1178, 1227, 1329
Bso31I	GGTCTC	1 cut(s)	95
BsoBI	CYCGRG	2 cut(s)	387, 427
Bsp1286I	GDGCHC	1 cut(s)	927
Bsp143I	GATC	2 cut(s)	410, 1314
BspACI	CCGC	3 cut(s)	112, 145, 1175
BspANI	GGCC	4 cut(s)	731, 1178, 1227, 1329
BspCNI	CTCAG	4 cut(s)	234, 559, 961, 1182
BspLI	GGNNCC	1 cut(s)	1226
BspMAI	CTGCAG	3 cut(s)	628, 793, 1342
BspMI	ACCTGC	2 cut(s)	156, 631
BspQI	GCTCTTC	2 cut(s)	606, 948
BspTNI	GGTCTC	1 cut(s)	95
BsrBI	CCGCTC	1 cut(s)	147
BsrDI	GCAATG	1 cut(s)	299
BsrFI	RCCGGY	1 cut(s)	161
BsrI	ACTGG	1 cut(s)	1321
BssAI	RCCGGY	1 cut(s)	161
BssECI	CCNNGG	1 cut(s)	428
BssMI	GATC	2 cut(s)	410, 1314
Bst4CI	ACNGT	2 cut(s)	120, 373
Bst6I	CTCTTC	3 cut(s)	93, 606, 948
BstDEI	CTNAG	5 cut(s)	242, 546, 679, 969, 1190
BstF5I	GGATG	3 cut(s)	313, 727, 1317
BstH2I	RGCGCY	1 cut(s)	135
BstHHI	GCGC	1 cut(s)	134
BstKTI	GATC	2 cut(s)	413, 1317
BstMAI	GTCTC	2 cut(s)	95, 377
BstMBI	GATC	2 cut(s)	410, 1314
BstMWI	GCNNNNNNNGC	4 cut(s)	13, 218, 524, 1349
BstSCI	CCNGG	1 cut(s)	1073
BstSFI	CTRYAG	5 cut(s)	624, 735, 789, 887, 1338
BstV1I	GCAGC	6 cut(s)	19, 22, 25, 638, 652, 1352
BstV2I	GAAGAC	1 cut(s)	708
BsuRI	GGCC	4 cut(s)	731, 1178, 1227, 1329
BtrI	CACGTC	1 cut(s)	348
BtsCI	GGATG	3 cut(s)	313, 727, 1317
BveI	ACCTGC	2 cut(s)	156, 631
CaiI	CAGNNNCTG	1 cut(s)	968
CfoI	GCGC	1 cut(s)	134
Cfr10I	RCCGGY	1 cut(s)	161
Cfr13I	GGNCC	2 cut(s)	785, 1225
CseI	GACGC	1 cut(s)	215
Csp6I	GTAC	1 cut(s)	361
CviAII	CATG	2 cut(s)	595, 812
CviQI	GTAC	1 cut(s)	361
DdeI	CTNAG	5 cut(s)	242, 546, 679, 969, 1190
DpnI	GATC	2 cut(s)	412, 1316
DpnII	GATC	2 cut(s)	410, 1314
EaeI	YGGCCR	2 cut(s)	1176, 1327
Eam1104I	CTCTTC	3 cut(s)	93, 606, 948
EarI	CTCTTC	3 cut(s)	93, 606, 948
Eco147I	AGGCCT	1 cut(s)	731
Eco31I	GGTCTC	1 cut(s)	95
Eco47I	GGWCC	1 cut(s)	785
Eco57I	CTGAAG	3 cut(s)	117, 417, 1233
Eco88I	CYCGRG	2 cut(s)	387, 427
FaeI	CATG	2 cut(s)	598, 815
FalI	AAGNNNNNCTT	4 cut(s)	662, 694, 942, 974
FaqI	GGGAC	3 cut(s)	106, 830, 1090
FatI	CATG	2 cut(s)	594, 811
FbaI	TGATCA	1 cut(s)	1314
Fnu4HI	GCNGC	8 cut(s)	8, 11, 14, 627, 666, 1176, 1341, 1353
FokI	GGATG	3 cut(s)	320, 734, 1304
Fsp4HI	GCNGC	8 cut(s)	8, 11, 14, 627, 666, 1176, 1341, 1353
FspBI	CTAG	5 cut(s)	282, 662, 842, 1010, 1280
GlaI	GCGC	1 cut(s)	133
GluI	GCNGC	8 cut(s)	8, 11, 14, 627, 666, 1176, 1341, 1353
GsuI	CTGGAG	1 cut(s)	1014
HaeII	RGCGCY	1 cut(s)	135
HaeIII	GGCC	4 cut(s)	731, 1178, 1227, 1329
HapII	CCGG	2 cut(s)	162, 1074
HgaI	GACGC	1 cut(s)	215
HhaI	GCGC	1 cut(s)	134
Hin1II	CATG	2 cut(s)	598, 815
Hin6I	GCGC	1 cut(s)	132
HinP1I	GCGC	1 cut(s)	132
HincII	GTYRAC	1 cut(s)	916
HindII	GTYRAC	1 cut(s)	916
HindIII	AAGCTT	3 cut(s)	1165, 1199, 1230
HpaI	GTTAAC	1 cut(s)	916
HpaII	CCGG	2 cut(s)	162, 1074
HphI	GGTGA	2 cut(s)	68, 452
Hpy166II	GTNNAC	1 cut(s)	916
Hpy188I	TCNGA	5 cut(s)	415, 501, 706, 721, 1191
Hpy188III	TCNNGA	8 cut(s)	83, 95, 389, 408, 747, 962, 1001, 1031
Hpy8I	GTNNAC	1 cut(s)	916
HpyAV	CCTTC	5 cut(s)	89, 197, 250, 1205, 1257
HpyCH4III	ACNGT	2 cut(s)	120, 373
HpyCH4IV	ACGT	2 cut(s)	347, 507
HpyCH4V	TGCA	8 cut(s)	304, 556, 626, 668, 791, 995, 1207, 1340
HpyF10VI	GCNNNNNNNGC	4 cut(s)	13, 218, 524, 1349
HpyF3I	CTNAG	5 cut(s)	242, 546, 679, 969, 1190
HpySE526I	ACGT	2 cut(s)	347, 507
Hsp92II	CATG	2 cut(s)	598, 815
HspAI	GCGC	1 cut(s)	132
Ksp22I	TGATCA	1 cut(s)	1314
KspAI	GTTAAC	1 cut(s)	916
Kzo9I	GATC	2 cut(s)	410, 1314
LguI	GCTCTTC	2 cut(s)	606, 948
LmnI	GCTCC	3 cut(s)	589, 634, 740
Lsp1109I	GCAGC	6 cut(s)	19, 22, 25, 638, 652, 1352
LweI	GCATC	1 cut(s)	1162
MaeI	CTAG	5 cut(s)	282, 662, 842, 1010, 1280
MaeII	ACGT	2 cut(s)	347, 507
MaeIII	GTNAC	4 cut(s)	74, 695, 1237, 1331
MalI	GATC	2 cut(s)	412, 1316
MbiI	CCGCTC	1 cut(s)	147
MboI	GATC	2 cut(s)	410, 1314
MhlI	GDGCHC	1 cut(s)	927
MluCI	AATT	1 cut(s)	175
MlyI	GAGTC	5 cut(s)	70, 379, 710, 722, 1072
MmeI	TCCRAC	1 cut(s)	802
MroXI	GAANNNNTTC	3 cut(s)	90, 777, 957
MseI	TTAA	6 cut(s)	263, 915, 984, 1059, 1347, 1357
MslI	CAYNNNNRTG	2 cut(s)	816, 930
MspA1I	CMGCKG	1 cut(s)	1343
MspI	CCGG	2 cut(s)	162, 1074
MspR9I	CCNGG	1 cut(s)	1075
MwoI	GCNNNNNNNGC	4 cut(s)	13, 218, 524, 1349
NciI	CCSGG	1 cut(s)	1075
NdeII	GATC	2 cut(s)	410, 1314
NlaIII	CATG	2 cut(s)	598, 815
NlaIV	GGNNCC	1 cut(s)	1226
NmuCI	GTSAC	2 cut(s)	74, 695
PaqCI	CACCTGC	1 cut(s)	631
PceI	AGGCCT	1 cut(s)	731
PciSI	GCTCTTC	2 cut(s)	606, 948
PdmI	GAANNNNTTC	3 cut(s)	90, 777, 957
PfeI	GAWTC	5 cut(s)	70, 320, 773, 877, 1276
PflMI	CCANNNNNTGG	1 cut(s)	488
PkrI	GCNGC	8 cut(s)	9, 12, 15, 628, 667, 1177, 1342, 1354
PleI	GAGTC	5 cut(s)	69, 379, 709, 721, 1072
PpsI	GAGTC	5 cut(s)	69, 379, 709, 721, 1072
Psp1406I	AACGTT	1 cut(s)	507
PspN4I	GGNNCC	1 cut(s)	1226
PspPI	GGNCC	2 cut(s)	785, 1225
PstI	CTGCAG	3 cut(s)	628, 793, 1342
PstNI	CAGNNNCTG	1 cut(s)	968
PvuII	CAGCTG	1 cut(s)	1343
RsaI	GTAC	1 cut(s)	362
RsaNI	GTAC	1 cut(s)	361
RseI	CAYNNNNRTG	2 cut(s)	816, 930
SapI	GCTCTTC	2 cut(s)	606, 948
SaqAI	TTAA	6 cut(s)	263, 915, 984, 1059, 1347, 1357
SatI	GCNGC	8 cut(s)	8, 11, 14, 627, 666, 1176, 1341, 1353
Sau3AI	GATC	2 cut(s)	410, 1314
Sau96I	GGNCC	2 cut(s)	785, 1225
SchI	GAGTC	5 cut(s)	70, 379, 710, 722, 1072
ScrFI	CCNGG	1 cut(s)	1075
SduI	GDGCHC	1 cut(s)	927
SfaNI	GCATC	1 cut(s)	1162
SfcI	CTRYAG	5 cut(s)	624, 735, 789, 887, 1338
SinI	GGWCC	1 cut(s)	785
SmiMI	CAYNNNNRTG	2 cut(s)	816, 930
SmlI	CTYRAG	1 cut(s)	464
SmoI	CTYRAG	1 cut(s)	464
Sse9I	AATT	1 cut(s)	175
SseBI	AGGCCT	1 cut(s)	731
SsiI	CCGC	3 cut(s)	112, 145, 1175
SspI	AATATT	3 cut(s)	496, 577, 1041
SspMI	CTAG	5 cut(s)	282, 662, 842, 1010, 1280
StuI	AGGCCT	1 cut(s)	731
StyD4I	CCNGG	1 cut(s)	1073
TaaI	ACNGT	2 cut(s)	120, 373
TaiI	ACGT	2 cut(s)	350, 510
TaqII	GACCGA	1 cut(s)	773
TasI	AATT	1 cut(s)	175
TauI	GCSGC	1 cut(s)	1178
TfiI	GAWTC	5 cut(s)	70, 320, 773, 877, 1276
Tru1I	TTAA	6 cut(s)	263, 915, 984, 1059, 1347, 1357
Tru9I	TTAA	6 cut(s)	263, 915, 984, 1059, 1347, 1357
TseFI	GTSAC	2 cut(s)	74, 695
TseI	GCWGC	7 cut(s)	7, 10, 13, 626, 665, 1340, 1352
Tsp45I	GTSAC	2 cut(s)	74, 695
TspDTI	ATGAA	4 cut(s)	17, 578, 587, 828
Van91I	CCANNNNNTGG	1 cut(s)	488
VpaK11BI	GGWCC	1 cut(s)	785
XmnI	GAANNNNTTC	3 cut(s)	90, 777, 957
XspI	CTAG	5 cut(s)	282, 662, 842, 1010, 1280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.