Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0002408

Physical Location & Seq

Genomic Coordinates Reverse (-)

75365144 .. 75366279

Gene Structure 1136 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG473700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGGTGAATGCGATGCTCCGATCTGGTGCAGTGGCTCTCAATCCTCTGCTCCGCCCAAGCGACCCTTCTCCTTCACCGCCGGCCGCAACCATGCTTCCGAACTGGAATCCCAAAGATAAGGAGCAGATGAGGATAGTGAAGGAGGCATTGCACTTGTCTATGGTTCCCTCTAGTGTTGCGTGCTGCGAAGTGGAGCAGAAGAGGGTTTTGGAGTTCTGCAATTCATGCATAGAGCAAGAGAAGGCTCATGGATACGGCTTACTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0022402 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044786 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA_22 Cdc6_C

Protein Analysis

88

Amino Acids

9.68

Weight (kDa)

6.71

Isoelectric Point (pI)

68.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002408)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0117421 RchiOBHm_Chr2g0147571
rosa_laevigata	RLG00000009715 RLG00000036789
rosa_multiflora	Rmu_sc0005551.1_g000001 Rmu_sc0005551.1_g000002 Rmu_sc0006255.1_g000001 Rmu_sc0006255.1_g000006 Rmu_sc0006255.1_g000008 Rmu_sc0006368.1_g000001 Rmu_sc0008753.1_g000001 Rmu_sc0010335.1_g000001 Rmu_sc0010420.1_g000002 Rmu_sc0013459.1_g000003 Rmu_sc0029520.1_g000001 Rmu_sc0031364.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029450 Rroxscaffold_1G00029500 Rroxscaffold_1G00029570 Rroxscaffold_1G00029580 Rroxscaffold_1G00029590 Rroxscaffold_5G00379910 Rroxscaffold_7G00209950
rosa_rugosa	Rorug01G0060000 Rorug03G0369200.1 Rorug05G0426400 Rorug05G0426500 Rorug05G0426600
rosa_samantha	Rh1AG147300 Rh1BG061700 Rh1CG138600 Rh2BG280100 Rh2BG537700 Rh2CG258400 Rh2CG272200 Rh2DG275000 Rh2DG290600 Rh2DG294200 Rh2DG294400 Rh5BG473700 Rh7AG238100 Rh7CG254700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	52, 77, 84
AcoI	YGGCCR	1 cut(s)	81
AjuI	GAANNNNNNNTTGG	4 cut(s)	49, 81, 191, 223
AoxI	GGCC	1 cut(s)	81
ApeKI	GCWGC	1 cut(s)	183
AsuHPI	GGTGA	2 cut(s)	16, 66
BbvI	GCAGC	1 cut(s)	170
BciVI	GTATCC	1 cut(s)	245
BfaI	CTAG	2 cut(s)	171, 265
BfuI	GTATCC	1 cut(s)	245
BisI	GCNGC	2 cut(s)	84, 184
BlsI	GCNGC	2 cut(s)	85, 185
BmiI	GGNNCC	1 cut(s)	165
BmsI	GCATC	1 cut(s)	3
Bse118I	RCCGGY	1 cut(s)	79
Bse1I	ACTGG	1 cut(s)	107
Bse3DI	GCAATG	1 cut(s)	146
BseMI	GCAATG	1 cut(s)	146
BseNI	ACTGG	1 cut(s)	107
BseX3I	CGGCCG	1 cut(s)	81
BseXI	GCAGC	1 cut(s)	170
BsgI	GTGCAG	1 cut(s)	48
Bsh1285I	CGRYCG	1 cut(s)	84
BshFI	GGCC	1 cut(s)	83
BsiEI	CGRYCG	1 cut(s)	84
BsiSI	CCGG	1 cut(s)	80
BsmI	GAATGC	1 cut(s)	13
BsnI	GGCC	1 cut(s)	83
Bsp143I	GATC	1 cut(s)	20
BspACI	CCGC	3 cut(s)	52, 77, 84
BspANI	GGCC	1 cut(s)	83
BspLI	GGNNCC	1 cut(s)	165
BsrDI	GCAATG	1 cut(s)	146
BsrFI	RCCGGY	1 cut(s)	79
BsrI	ACTGG	1 cut(s)	107
BssAI	RCCGGY	1 cut(s)	79
BssMI	GATC	1 cut(s)	20
Bst6I	CTCTTC	1 cut(s)	194
BstAPI	GCANNNNNTGC	1 cut(s)	225
BstC8I	GCNNGC	2 cut(s)	81, 181
BstKTI	GATC	1 cut(s)	23
BstMBI	GATC	1 cut(s)	20
BstMCI	CGRYCG	1 cut(s)	84
BstMWI	GCNNNNNNNGC	1 cut(s)	225
BstV1I	GCAGC	1 cut(s)	170
BstZI	CGGCCG	1 cut(s)	81
BsuI	GTATCC	1 cut(s)	245
BsuRI	GGCC	1 cut(s)	83
BtgZI	GCGATG	1 cut(s)	26
BtsI	GCAGTG	1 cut(s)	36
BtsIMutI	CAGTG	1 cut(s)	36
Cac8I	GCNNGC	2 cut(s)	81, 181
Cfr10I	RCCGGY	1 cut(s)	79
CviAII	CATG	3 cut(s)	91, 225, 248
CviJI	RGCY	4 cut(s)	35, 83, 245, 258
CviKI_1	RGCY	4 cut(s)	35, 83, 245, 258
DpnI	GATC	1 cut(s)	22
DpnII	GATC	1 cut(s)	20
EaeI	YGGCCR	1 cut(s)	81
EagI	CGGCCG	1 cut(s)	81
Eam1104I	CTCTTC	1 cut(s)	194
EarI	CTCTTC	1 cut(s)	194
EciI	GGCGGA	1 cut(s)	41
EclXI	CGGCCG	1 cut(s)	81
Eco52I	CGGCCG	1 cut(s)	81
EcoT22I	ATGCAT	1 cut(s)	230
FaeI	CATG	3 cut(s)	94, 228, 251
FaiI	YATR	5 cut(s)	92, 161, 226, 230, 249
FalI	AAGNNNNNCTT	2 cut(s)	49, 81
FatI	CATG	3 cut(s)	90, 224, 247
Fnu4HI	GCNGC	2 cut(s)	84, 184
Fsp4HI	GCNGC	2 cut(s)	84, 184
FspBI	CTAG	2 cut(s)	171, 265
GluI	GCNGC	2 cut(s)	84, 184
HaeIII	GGCC	1 cut(s)	83
HapII	CCGG	1 cut(s)	80
Hin1II	CATG	3 cut(s)	94, 228, 251
HinfI	GANTC	1 cut(s)	106
HpaII	CCGG	1 cut(s)	80
HphI	GGTGA	2 cut(s)	16, 66
Hpy188I	TCNGA	2 cut(s)	20, 99
HpyAV	CCTTC	4 cut(s)	75, 81, 133, 235
HpyCH4V	TGCA	4 cut(s)	29, 151, 219, 228
HpyF10VI	GCNNNNNNNGC	1 cut(s)	225
Hsp92II	CATG	3 cut(s)	94, 228, 251
KroI	GCCGGC	1 cut(s)	79
KroNI	GCCGGC	1 cut(s)	81
Kzo9I	GATC	1 cut(s)	20
LmnI	GCTCC	4 cut(s)	21, 54, 121, 193
LpnPI	CCDG	3 cut(s)	9, 88, 93
Lsp1109I	GCAGC	1 cut(s)	170
LweI	GCATC	1 cut(s)	3
MaeI	CTAG	2 cut(s)	171, 265
MalI	GATC	1 cut(s)	22
MboI	GATC	1 cut(s)	20
MboII	GAAGA	1 cut(s)	211
MluCI	AATT	1 cut(s)	220
MnlI	CCTC	5 cut(s)	54, 123, 136, 178, 195
Mph1103I	ATGCAT	1 cut(s)	230
MroNI	GCCGGC	1 cut(s)	79
MspI	CCGG	1 cut(s)	80
Mva1269I	GAATGC	1 cut(s)	13
MwoI	GCNNNNNNNGC	1 cut(s)	225
NaeI	GCCGGC	1 cut(s)	81
NdeII	GATC	1 cut(s)	20
NgoMIV	GCCGGC	1 cut(s)	79
NlaIII	CATG	3 cut(s)	94, 228, 251
NlaIV	GGNNCC	1 cut(s)	165
NsiI	ATGCAT	1 cut(s)	230
PctI	GAATGC	1 cut(s)	13
PdiI	GCCGGC	1 cut(s)	81
PfeI	GAWTC	1 cut(s)	106
PkrI	GCNGC	2 cut(s)	85, 185
PspN4I	GGNNCC	1 cut(s)	165
SatI	GCNGC	2 cut(s)	84, 184
Sau3AI	GATC	1 cut(s)	20
SfaNI	GCATC	1 cut(s)	3
Sse9I	AATT	1 cut(s)	220
SsiI	CCGC	3 cut(s)	52, 77, 84
SspMI	CTAG	2 cut(s)	171, 265
TasI	AATT	1 cut(s)	220
TauI	GCSGC	1 cut(s)	86
TfiI	GAWTC	1 cut(s)	106
TscAI	CASTG	1 cut(s)	36
TseI	GCWGC	1 cut(s)	183
TspDTI	ATGAA	1 cut(s)	213
TspRI	CASTG	1 cut(s)	36
XspI	CTAG	2 cut(s)	171, 265
Zsp2I	ATGCAT	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.