Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002408

Physical Location & Seq

Genomic Coordinates Reverse (-)

9921222 .. 9921939

Gene Structure 718 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0060000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGTGGAAGTTCATAGTTCAAATTGCTACCCAGTTGAGCTGGTTATTCAACTATTTGCTTTTCTGTTCGTTTGCCAAACCCTACTATGAGTTTGAATTACCTGCAAAAGCTATAGAGACTCTTAGTAGTACTGTCCACTACAAAAGCTCCAACCCTGCTGTGAGGTGCTCTGAAGAAGAATGTGCTGTGTGTCTATGCAAAATTGAGGAAGGAGAAGAGATGAGAGAATTGAGATGTGCTCATCTCTTTCATAAAACATGCTTGGACCGTTGGACAGGTCTTAAACATGTCACGTGTCCCCTTTGCCGGAGTTTCCTAGCTCCCCCAGTAAGTTCAAAATCCCGGTTTCAAATTGAAGTGCTTCATTTCAGATTCTGCTCTTTCCAGTCGGATAAAGATCGTGATACATGGTGGTTGCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0022402 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044786 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA_22 Cdc6_C

Protein Analysis

140

Amino Acids

16.57

Weight (kDa)

8.04

Isoelectric Point (pI)

59.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	60 - 103	4.8e-12	Ring finger domain
zf-RING_11	PF17123	60 - 88	5.5e-09	RING-like zinc finger
zf-C3HC4	PF00097	61 - 102	6.8e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002408)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0117421 RchiOBHm_Chr2g0147571
rosa_laevigata	RLG00000009715 RLG00000036789
rosa_multiflora	Rmu_sc0005551.1_g000001 Rmu_sc0005551.1_g000002 Rmu_sc0006255.1_g000001 Rmu_sc0006255.1_g000006 Rmu_sc0006255.1_g000008 Rmu_sc0006368.1_g000001 Rmu_sc0008753.1_g000001 Rmu_sc0010335.1_g000001 Rmu_sc0010420.1_g000002 Rmu_sc0013459.1_g000003 Rmu_sc0029520.1_g000001 Rmu_sc0031364.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029450 Rroxscaffold_1G00029500 Rroxscaffold_1G00029570 Rroxscaffold_1G00029580 Rroxscaffold_1G00029590 Rroxscaffold_5G00379910 Rroxscaffold_7G00209950
rosa_rugosa	Rorug01G0060000 Rorug03G0369200.1 Rorug05G0426400 Rorug05G0426500 Rorug05G0426600
rosa_samantha	Rh1AG147300 Rh1BG061700 Rh1CG138600 Rh2BG280100 Rh2BG537700 Rh2CG258400 Rh2CG272200 Rh2DG275000 Rh2DG290600 Rh2DG294200 Rh2DG294400 Rh5BG473700 Rh7AG238100 Rh7CG254700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	109
AcuI	CTGAAG	1 cut(s)	192
AcvI	CACGTG	1 cut(s)	294
AfaI	GTAC	1 cut(s)	130
AfiI	CCNNNNNNNGG	1 cut(s)	306
AflIII	ACRYGT	2 cut(s)	286, 293
AgsI	TTSAA	6 cut(s)	20, 49, 95, 336, 350, 356
AluBI	AGCT	4 cut(s)	39, 110, 147, 320
AluI	AGCT	4 cut(s)	39, 110, 147, 320
Alw21I	GWGCWC	2 cut(s)	170, 241
Alw26I	GTCTC	1 cut(s)	110
AlwNI	CAGNNNCTG	1 cut(s)	375
Asp700I	GAANNNNTTC	1 cut(s)	360
AspLEI	GCGC	1 cut(s)	420
AspS9I	GGNCC	1 cut(s)	265
AsuC2I	CCSGG	1 cut(s)	343
AvaII	GGWCC	1 cut(s)	265
BbrPI	CACGTG	1 cut(s)	294
Bbv12I	GWGCWC	2 cut(s)	170, 241
BcnI	CCSGG	1 cut(s)	343
BcoDI	GTCTC	1 cut(s)	110
BfaI	CTAG	1 cut(s)	317
BfmI	CTRYAG	1 cut(s)	111
BfuAI	ACCTGC	1 cut(s)	109
BmcAI	AGTACT	1 cut(s)	130
Bme1390I	CCNGG	1 cut(s)	343
Bme18I	GGWCC	1 cut(s)	265
BmgT120I	GGNCC	1 cut(s)	265
BmrFI	CCNGG	1 cut(s)	343
BmrI	ACTGGG	2 cut(s)	25, 320
BmuI	ACTGGG	2 cut(s)	25, 320
BplI	GAGNNNNNCTC	2 cut(s)	223, 255
BpuMI	CCSGG	1 cut(s)	343
BsaAI	YACGTR	1 cut(s)	294
BsaBI	GATNNNNATC	1 cut(s)	396
BsaXI	ACNNNNNCTCC	2 cut(s)	131, 161
Bsc4I	CCNNNNNNNGG	1 cut(s)	306
Bse1I	ACTGG	3 cut(s)	31, 326, 385
Bse8I	GATNNNNATC	1 cut(s)	396
BseJI	GATNNNNATC	1 cut(s)	396
BseLI	CCNNNNNNNGG	1 cut(s)	306
BseNI	ACTGG	3 cut(s)	31, 326, 385
BsiHKAI	GWGCWC	2 cut(s)	170, 241
BsiSI	CCGG	2 cut(s)	307, 343
BslFI	GGGAC	1 cut(s)	282
BslI	CCNNNNNNNGG	1 cut(s)	306
BsmAI	GTCTC	1 cut(s)	110
BsmFI	GGGAC	1 cut(s)	282
Bsp1286I	GDGCHC	2 cut(s)	170, 241
Bsp143I	GATC	1 cut(s)	397
BspMI	ACCTGC	1 cut(s)	109
BsrI	ACTGG	3 cut(s)	31, 326, 385
BssMI	GATC	1 cut(s)	397
Bst4CI	ACNGT	2 cut(s)	133, 269
Bst6I	CTCTTC	1 cut(s)	210
BstBAI	YACGTR	1 cut(s)	294
BstDEI	CTNAG	1 cut(s)	122
BstHHI	GCGC	1 cut(s)	420
BstKTI	GATC	1 cut(s)	400
BstMAI	GTCTC	1 cut(s)	110
BstMBI	GATC	1 cut(s)	397
BstNSI	RCATGY	2 cut(s)	261, 290
BstSCI	CCNGG	1 cut(s)	341
BstSFI	CTRYAG	1 cut(s)	111
BveI	ACCTGC	1 cut(s)	109
CaiI	CAGNNNCTG	1 cut(s)	375
CfoI	GCGC	1 cut(s)	420
Cfr13I	GGNCC	1 cut(s)	265
Csp6I	GTAC	1 cut(s)	129
CviAII	CATG	3 cut(s)	258, 287, 408
CviJI	RGCY	4 cut(s)	39, 110, 147, 320
CviKI_1	RGCY	4 cut(s)	39, 110, 147, 320
CviQI	GTAC	1 cut(s)	129
DdeI	CTNAG	1 cut(s)	122
DpnI	GATC	1 cut(s)	399
DpnII	GATC	1 cut(s)	397
Eam1104I	CTCTTC	1 cut(s)	210
EarI	CTCTTC	1 cut(s)	210
Eco47I	GGWCC	1 cut(s)	265
Eco57I	CTGAAG	1 cut(s)	192
Eco72I	CACGTG	1 cut(s)	294
FaeI	CATG	3 cut(s)	261, 290, 411
FaiI	YATR	8 cut(s)	14, 87, 113, 196, 252, 259, 288, 409
FaqI	GGGAC	1 cut(s)	282
FatI	CATG	3 cut(s)	257, 286, 407
FspBI	CTAG	1 cut(s)	317
GlaI	GCGC	1 cut(s)	419
HapII	CCGG	2 cut(s)	307, 343
HhaI	GCGC	1 cut(s)	420
Hin1II	CATG	3 cut(s)	261, 290, 411
Hin6I	GCGC	1 cut(s)	418
HinP1I	GCGC	1 cut(s)	418
HinfI	GANTC	2 cut(s)	118, 372
HpaII	CCGG	2 cut(s)	307, 343
Hpy166II	GTNNAC	1 cut(s)	136
Hpy188I	TCNGA	3 cut(s)	172, 371, 391
Hpy188III	TCNNGA	1 cut(s)	401
Hpy8I	GTNNAC	1 cut(s)	136
HpyAV	CCTTC	1 cut(s)	203
HpyCH4III	ACNGT	2 cut(s)	133, 269
HpyCH4IV	ACGT	1 cut(s)	293
HpyCH4V	TGCA	2 cut(s)	104, 198
HpyF3I	CTNAG	1 cut(s)	122
HpySE526I	ACGT	1 cut(s)	293
Hsp92II	CATG	3 cut(s)	261, 290, 411
HspAI	GCGC	1 cut(s)	418
Kzo9I	GATC	1 cut(s)	397
LmnI	GCTCC	2 cut(s)	152, 325
LpnPI	CCDG	9 cut(s)	25, 44, 114, 168, 261, 320, 339, 356, 398
MaeI	CTAG	1 cut(s)	317
MaeII	ACGT	1 cut(s)	293
MaeIII	GTNAC	1 cut(s)	289
MalI	GATC	1 cut(s)	399
MboI	GATC	1 cut(s)	397
MboII	GAAGA	3 cut(s)	185, 188, 227
MhlI	GDGCHC	2 cut(s)	170, 241
MluCI	AATT	5 cut(s)	21, 95, 201, 227, 351
MlyI	GAGTC	1 cut(s)	112
MmeI	TCCRAC	3 cut(s)	174, 251, 369
MnlI	CCTC	2 cut(s)	156, 199
MroXI	GAANNNNTTC	1 cut(s)	360
MseI	TTAA	1 cut(s)	282
MspI	CCGG	2 cut(s)	307, 343
MspR9I	CCNGG	1 cut(s)	343
NciI	CCSGG	1 cut(s)	343
NdeII	GATC	1 cut(s)	397
NlaIII	CATG	3 cut(s)	261, 290, 411
NmuCI	GTSAC	1 cut(s)	289
NspI	RCATGY	2 cut(s)	261, 290
PciI	ACATGT	1 cut(s)	286
PdmI	GAANNNNTTC	1 cut(s)	360
PfeI	GAWTC	1 cut(s)	372
PleI	GAGTC	1 cut(s)	112
PmaCI	CACGTG	1 cut(s)	294
PmlI	CACGTG	1 cut(s)	294
PpsI	GAGTC	1 cut(s)	112
Ppu21I	YACGTR	1 cut(s)	294
PscI	ACATGT	1 cut(s)	286
PspCI	CACGTG	1 cut(s)	294
PspPI	GGNCC	1 cut(s)	265
PstNI	CAGNNNCTG	1 cut(s)	375
RsaI	GTAC	1 cut(s)	130
RsaNI	GTAC	1 cut(s)	129
SaqAI	TTAA	1 cut(s)	282
Sau3AI	GATC	1 cut(s)	397
Sau96I	GGNCC	1 cut(s)	265
ScaI	AGTACT	1 cut(s)	130
SchI	GAGTC	1 cut(s)	112
ScrFI	CCNGG	1 cut(s)	343
SduI	GDGCHC	2 cut(s)	170, 241
SetI	ASST	8 cut(s)	41, 103, 112, 149, 167, 280, 296, 322
SfcI	CTRYAG	1 cut(s)	111
SinI	GGWCC	1 cut(s)	265
Sse9I	AATT	5 cut(s)	21, 95, 201, 227, 351
SspMI	CTAG	1 cut(s)	317
StyD4I	CCNGG	1 cut(s)	341
TaaI	ACNGT	2 cut(s)	133, 269
TaiI	ACGT	1 cut(s)	296
TasI	AATT	5 cut(s)	21, 95, 201, 227, 351
TatI	WGTACW	1 cut(s)	128
TfiI	GAWTC	1 cut(s)	372
Tru1I	TTAA	1 cut(s)	282
Tru9I	TTAA	1 cut(s)	282
TseFI	GTSAC	1 cut(s)	289
Tsp45I	GTSAC	1 cut(s)	289
TspDTI	ATGAA	2 cut(s)	239, 353
VpaK11BI	GGWCC	1 cut(s)	265
XceI	RCATGY	2 cut(s)	261, 290
XmnI	GAANNNNTTC	1 cut(s)	360
XspI	CTAG	1 cut(s)	317
ZrmI	AGTACT	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.