Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002408

Physical Location & Seq

Genomic Coordinates Reverse (-)

38081059 .. 38081519

Gene Structure 461 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00029500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGAAGCCGATACCGGTCTCGTCGCCGATGAAGTGTAAATCGGCTCGCCGGAACCTCGGTGCTTGCAGCACCACTCCCGCAAATGGAATTGAGAAGTATTTCGGTCGAGAAAAAGCCTCAAGCCTTTTGCAAACCACCGGTTATAAGGAGCAGATGAGGATAGTGAAGGAGGCATTGCACTTGTCTACGGTTCCCTCTACGATTGCGTGCCGCGACGTGGAGCAAAGAGGGTTTTGGAGTTCTGCAAGTCATGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0022402 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044786 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA_22 Cdc6_C

Protein Analysis

85

Amino Acids

9.33

Weight (kDa)

9.78

Isoelectric Point (pI)

51.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002408)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0117421 RchiOBHm_Chr2g0147571
rosa_laevigata	RLG00000009715 RLG00000036789
rosa_multiflora	Rmu_sc0005551.1_g000001 Rmu_sc0005551.1_g000002 Rmu_sc0006255.1_g000001 Rmu_sc0006255.1_g000006 Rmu_sc0006255.1_g000008 Rmu_sc0006368.1_g000001 Rmu_sc0008753.1_g000001 Rmu_sc0010335.1_g000001 Rmu_sc0010420.1_g000002 Rmu_sc0013459.1_g000003 Rmu_sc0029520.1_g000001 Rmu_sc0031364.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029450 Rroxscaffold_1G00029500 Rroxscaffold_1G00029570 Rroxscaffold_1G00029580 Rroxscaffold_1G00029590 Rroxscaffold_5G00379910 Rroxscaffold_7G00209950
rosa_rugosa	Rorug01G0060000 Rorug03G0369200.1 Rorug05G0426400 Rorug05G0426500 Rorug05G0426600
rosa_samantha	Rh1AG147300 Rh1BG061700 Rh1CG138600 Rh2BG280100 Rh2BG537700 Rh2CG258400 Rh2CG272200 Rh2DG275000 Rh2DG290600 Rh2DG294200 Rh2DG294400 Rh5BG473700 Rh7AG238100 Rh7CG254700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	144
AccI	GTMKAC	1 cut(s)	185
AccII	CGCG	1 cut(s)	213
AciI	CCGC	2 cut(s)	78, 211
AfiI	CCNNNNNNNGG	2 cut(s)	83, 217
AgeI	ACCGGT	2 cut(s)	13, 137
AjiI	CACGTC	1 cut(s)	217
Alw26I	GTCTC	1 cut(s)	22
ApeKI	GCWGC	1 cut(s)	66
AsiGI	ACCGGT	2 cut(s)	13, 137
Asp700I	GAANNNNTTC	1 cut(s)	98
BbvI	GCAGC	1 cut(s)	78
BcoDI	GTCTC	1 cut(s)	22
BisI	GCNGC	2 cut(s)	67, 211
BlsI	GCNGC	2 cut(s)	68, 212
BmgBI	CACGTC	1 cut(s)	217
BmiI	GGNNCC	2 cut(s)	53, 192
BpuEI	CTTGAG	1 cut(s)	103
BsaI	GGTCTC	1 cut(s)	22
BsaJI	CCNNGG	1 cut(s)	55
BsaWI	WCCGGW	2 cut(s)	13, 137
Bsc4I	CCNNNNNNNGG	2 cut(s)	83, 217
Bse118I	RCCGGY	2 cut(s)	13, 137
Bse3DI	GCAATG	1 cut(s)	173
BseDI	CCNNGG	1 cut(s)	55
BseLI	CCNNNNNNNGG	2 cut(s)	83, 217
BseMI	GCAATG	1 cut(s)	173
BseXI	GCAGC	1 cut(s)	78
Bsh1236I	CGCG	1 cut(s)	213
Bsh1285I	CGRYCG	1 cut(s)	106
BshTI	ACCGGT	2 cut(s)	13, 137
BsiEI	CGRYCG	1 cut(s)	106
BsiSI	CCGG	3 cut(s)	14, 49, 138
BslI	CCNNNNNNNGG	2 cut(s)	83, 217
BsmAI	GTCTC	1 cut(s)	22
Bso31I	GGTCTC	1 cut(s)	22
BspACI	CCGC	2 cut(s)	78, 211
BspFNI	CGCG	1 cut(s)	213
BspLI	GGNNCC	2 cut(s)	53, 192
BspTNI	GGTCTC	1 cut(s)	22
BsrDI	GCAATG	1 cut(s)	173
BsrFI	RCCGGY	2 cut(s)	13, 137
BssAI	RCCGGY	2 cut(s)	13, 137
BssECI	CCNNGG	1 cut(s)	55
Bst4CI	ACNGT	1 cut(s)	190
BstAPI	GCANNNNNTGC	1 cut(s)	251
BstC8I	GCNNGC	3 cut(s)	46, 64, 208
BstFNI	CGCG	1 cut(s)	213
BstMAI	GTCTC	1 cut(s)	22
BstMCI	CGRYCG	1 cut(s)	106
BstMWI	GCNNNNNNNGC	1 cut(s)	251
BstUI	CGCG	1 cut(s)	213
BstV1I	GCAGC	1 cut(s)	78
BtrI	CACGTC	1 cut(s)	217
Cac8I	GCNNGC	3 cut(s)	46, 64, 208
Cfr10I	RCCGGY	2 cut(s)	13, 137
CspAI	ACCGGT	2 cut(s)	13, 137
CviAII	CATG	1 cut(s)	251
CviJI	RGCY	4 cut(s)	7, 44, 116, 123
CviKI_1	RGCY	4 cut(s)	7, 44, 116, 123
Eco31I	GGTCTC	1 cut(s)	22
EcoT22I	ATGCAT	1 cut(s)	256
FaeI	CATG	1 cut(s)	254
FaiI	YATR	3 cut(s)	144, 252, 256
FatI	CATG	1 cut(s)	250
FauI	CCCGC	1 cut(s)	85
FblI	GTMKAC	1 cut(s)	185
Fnu4HI	GCNGC	2 cut(s)	67, 211
Fsp4HI	GCNGC	2 cut(s)	67, 211
GluI	GCNGC	2 cut(s)	67, 211
HapII	CCGG	3 cut(s)	14, 49, 138
Hin1II	CATG	1 cut(s)	254
HpaII	CCGG	3 cut(s)	14, 49, 138
Hpy166II	GTNNAC	1 cut(s)	186
Hpy188III	TCNNGA	1 cut(s)	107
Hpy8I	GTNNAC	1 cut(s)	186
Hpy99I	CGWCG	2 cut(s)	25, 218
HpyAV	CCTTC	1 cut(s)	160
HpyCH4III	ACNGT	1 cut(s)	190
HpyCH4IV	ACGT	1 cut(s)	216
HpyCH4V	TGCA	5 cut(s)	66, 130, 178, 245, 254
HpyF10VI	GCNNNNNNNGC	1 cut(s)	251
HpySE526I	ACGT	1 cut(s)	216
Hsp92II	CATG	1 cut(s)	254
LmnI	GCTCC	2 cut(s)	148, 220
LpnPI	CCDG	3 cut(s)	27, 62, 151
Lsp1109I	GCAGC	1 cut(s)	78
MaeII	ACGT	1 cut(s)	216
MluCI	AATT	1 cut(s)	87
MnlI	CCTC	6 cut(s)	65, 127, 150, 163, 205, 221
Mph1103I	ATGCAT	1 cut(s)	256
MroXI	GAANNNNTTC	1 cut(s)	98
MspI	CCGG	3 cut(s)	14, 49, 138
MvnI	CGCG	1 cut(s)	213
MwoI	GCNNNNNNNGC	1 cut(s)	251
NlaIII	CATG	1 cut(s)	254
NlaIV	GGNNCC	2 cut(s)	53, 192
NsiI	ATGCAT	1 cut(s)	256
PdmI	GAANNNNTTC	1 cut(s)	98
PinAI	ACCGGT	2 cut(s)	13, 137
PkrI	GCNGC	2 cut(s)	68, 212
PsiI	TTATAA	1 cut(s)	144
PspN4I	GGNNCC	2 cut(s)	53, 192
SatI	GCNGC	2 cut(s)	67, 211
SetI	ASST	2 cut(s)	57, 219
SmlI	CTYRAG	1 cut(s)	118
SmoI	CTYRAG	1 cut(s)	118
Sse9I	AATT	1 cut(s)	87
SsiI	CCGC	2 cut(s)	78, 211
TaaI	ACNGT	1 cut(s)	190
TaiI	ACGT	1 cut(s)	219
TaqI	TCGA	1 cut(s)	106
TaqII	GACCGA	1 cut(s)	92
TasI	AATT	1 cut(s)	87
TauI	GCSGC	1 cut(s)	213
TseI	GCWGC	1 cut(s)	66
TspDTI	ATGAA	2 cut(s)	17, 44
XmiI	GTMKAC	1 cut(s)	185
XmnI	GAANNNNTTC	1 cut(s)	98
Zsp2I	ATGCAT	1 cut(s)	256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.