Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002408

Physical Location & Seq

Genomic Coordinates Forward (+)

60221391 .. 60223888

Gene Structure 2498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00209950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGAAAATAAGTGGAGCGATCCTAGCCTTCCATTTCCCCCACCGCTTGATCCTAGCCGTCCATTGTTAATTGGACAAGTCTATATAAAGGCCGTGAACAGTGGGAAGAACCAGAAGAATCAAGAGAGGGAGAGCTCAGTGCTCTCTAACCCGAGATGTAGCACAACCCGAGAGAGAGACCCGACTGGAACTTCCACTTCCGGCCACCCCACGACGGCGCTTGGGTACCCACGTCTTTGTCTCTGCATCGCCTACCTCCCTGCATCCTTAGATCATCCATGCACTGAACGGAGAAGGAGACTCGACGCCTGGAATCTCGGAGACTTCTCCGGCAAGTCCTGCAGTTCCCGGCCACTCCGTCCACCGTTTGGGCCGTCTGTGTTTGCCGTGTTCCTCGACGCCGGTAGTTTTTCAGGTCATGCCGGACTTGGTTTTCATCTTGGCTGCATTGGTGCACCAGAAATCAAGAGGCTTGCTGCGTTATTGGCTTCAAAATCCTCTGTTCATCATCAGCCCAGTTCAGCAAGGAATTCTGAAAAACCGAATAAGGAGCAGATGAGGATAGTGAAGGAGGCATTGCACTTGTCTATGGTTCCCTCTAGTGTTGCGTGTCGCGAAGTGGAGCAGAAGAGGGTTTTGGAGTTCTACAAGTCATGCATAGAGCAAGAGAAGGCTCATGGATACAGTTTTTGTATTACAATTTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0022402 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044786 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA_22 Cdc6_C

Protein Analysis

235

Amino Acids

25.95

Weight (kDa)

9.2

Isoelectric Point (pI)

56.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002408)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0117421 RchiOBHm_Chr2g0147571
rosa_laevigata	RLG00000009715 RLG00000036789
rosa_multiflora	Rmu_sc0005551.1_g000001 Rmu_sc0005551.1_g000002 Rmu_sc0006255.1_g000001 Rmu_sc0006255.1_g000006 Rmu_sc0006255.1_g000008 Rmu_sc0006368.1_g000001 Rmu_sc0008753.1_g000001 Rmu_sc0010335.1_g000001 Rmu_sc0010420.1_g000002 Rmu_sc0013459.1_g000003 Rmu_sc0029520.1_g000001 Rmu_sc0031364.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029450 Rroxscaffold_1G00029500 Rroxscaffold_1G00029570 Rroxscaffold_1G00029580 Rroxscaffold_1G00029590 Rroxscaffold_5G00379910 Rroxscaffold_7G00209950
rosa_rugosa	Rorug01G0060000 Rorug03G0369200.1 Rorug05G0426400 Rorug05G0426500 Rorug05G0426600
rosa_samantha	Rh1AG147300 Rh1BG061700 Rh1CG138600 Rh2BG280100 Rh2BG537700 Rh2CG258400 Rh2CG272200 Rh2DG275000 Rh2DG290600 Rh2DG294200 Rh2DG294400 Rh5BG473700 Rh7AG238100 Rh7CG254700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	225
AccB1I	GGYRCC	1 cut(s)	225
AccB7I	CCANNNNNTGG	1 cut(s)	368
AccII	CGCG	1 cut(s)	615
AciI	CCGC	1 cut(s)	44
AclWI	GGATC	2 cut(s)	14, 44
AcoI	YGGCCR	2 cut(s)	202, 350
AcsI	RAATTY	1 cut(s)	529
AcyI	GRCGYC	2 cut(s)	306, 399
AfaI	GTAC	1 cut(s)	227
AfiI	CCNNNNNNNGG	2 cut(s)	214, 368
AgsI	TTSAA	1 cut(s)	492
AjiI	CACGTC	1 cut(s)	233
AjnI	CCWGG	1 cut(s)	308
AjuI	GAANNNNNNNTTGG	2 cut(s)	620, 652
AluBI	AGCT	1 cut(s)	135
AluI	AGCT	1 cut(s)	135
Alw21I	GWGCWC	3 cut(s)	137, 144, 457
Alw26I	GTCTC	4 cut(s)	171, 245, 292, 315
Alw44I	GTGCAC	1 cut(s)	453
AlwI	GGATC	2 cut(s)	14, 44
Ama87I	CYCGRG	2 cut(s)	151, 168
AoxI	GGCC	4 cut(s)	90, 202, 350, 371
ApaLI	GTGCAC	1 cut(s)	453
ApeKI	GCWGC	2 cut(s)	444, 476
ApoI	RAATTY	1 cut(s)	529
Asp718I	GGTACC	1 cut(s)	225
AspLEI	GCGC	1 cut(s)	220
AspS9I	GGNCC	1 cut(s)	371
AsuC2I	CCSGG	1 cut(s)	349
AvaI	CYCGRG	2 cut(s)	151, 168
BaeGI	GKGCMC	1 cut(s)	457
BaeI	ACNNNNGTAYC	2 cut(s)	217, 250
BanI	GGYRCC	1 cut(s)	225
BanII	GRGCYC	1 cut(s)	137
Bbv12I	GWGCWC	3 cut(s)	137, 144, 457
BbvI	GCAGC	2 cut(s)	431, 463
BceAI	ACGGC	5 cut(s)	42, 77, 231, 358, 371
BciT130I	CCWGG	1 cut(s)	310
BciVI	GTATCC	1 cut(s)	674
BcnI	CCSGG	1 cut(s)	349
BcoDI	GTCTC	4 cut(s)	171, 245, 292, 315
BfaI	CTAG	3 cut(s)	24, 54, 600
BfmI	CTRYAG	1 cut(s)	340
BfoI	RGCGCY	1 cut(s)	221
BfuI	GTATCC	1 cut(s)	674
BisI	GCNGC	2 cut(s)	445, 477
BlsI	GCNGC	2 cut(s)	446, 478
Bme1390I	CCNGG	2 cut(s)	310, 349
BmeT110I	CYCGRG	2 cut(s)	151, 168
BmgBI	CACGTC	1 cut(s)	233
BmgT120I	GGNCC	1 cut(s)	371
BmiI	GGNNCC	2 cut(s)	227, 594
BmrFI	CCNGG	2 cut(s)	310, 349
BmrI	ACTGGG	1 cut(s)	510
BmsI	GCATC	2 cut(s)	255, 272
BmuI	ACTGGG	1 cut(s)	510
BpuMI	CCSGG	1 cut(s)	349
BsaHI	GRCGYC	2 cut(s)	306, 399
BsaI	GGTCTC	1 cut(s)	171
Bsc4I	CCNNNNNNNGG	2 cut(s)	214, 368
Bse118I	RCCGGY	1 cut(s)	401
Bse1I	ACTGG	2 cut(s)	190, 516
Bse3DI	GCAATG	1 cut(s)	575
BseBI	CCWGG	1 cut(s)	310
BseGI	GGATG	2 cut(s)	263, 274
BseLI	CCNNNNNNNGG	2 cut(s)	214, 368
BseMI	GCAATG	1 cut(s)	575
BseMII	CTCAG	1 cut(s)	150
BseNI	ACTGG	2 cut(s)	190, 516
BseSI	GKGCMC	1 cut(s)	457
BseXI	GCAGC	2 cut(s)	431, 463
Bsh1236I	CGCG	1 cut(s)	615
BshFI	GGCC	4 cut(s)	92, 204, 352, 373
BshNI	GGYRCC	1 cut(s)	225
BsiHKAI	GWGCWC	3 cut(s)	137, 144, 457
BsiHKCI	CYCGRG	2 cut(s)	151, 168
BsiSI	CCGG	5 cut(s)	201, 330, 349, 402, 423
BslI	CCNNNNNNNGG	2 cut(s)	214, 368
BsmAI	GTCTC	4 cut(s)	171, 245, 292, 315
BsnI	GGCC	4 cut(s)	92, 204, 352, 373
Bso31I	GGTCTC	1 cut(s)	171
BsoBI	CYCGRG	2 cut(s)	151, 168
Bsp1286I	GDGCHC	3 cut(s)	137, 144, 457
Bsp143I	GATC	3 cut(s)	19, 49, 271
Bsp68I	TCGCGA	1 cut(s)	615
BspACI	CCGC	1 cut(s)	44
BspANI	GGCC	4 cut(s)	92, 204, 352, 373
BspCNI	CTCAG	1 cut(s)	149
BspFNI	CGCG	1 cut(s)	615
BspLI	GGNNCC	2 cut(s)	227, 594
BspMAI	CTGCAG	1 cut(s)	344
BspPI	GGATC	2 cut(s)	14, 44
BspT107I	GGYRCC	1 cut(s)	225
BspTNI	GGTCTC	1 cut(s)	171
BsrDI	GCAATG	1 cut(s)	575
BsrFI	RCCGGY	1 cut(s)	401
BsrI	ACTGG	2 cut(s)	190, 516
BssAI	RCCGGY	1 cut(s)	401
BssMI	GATC	3 cut(s)	19, 49, 271
BssNI	GRCGYC	2 cut(s)	306, 399
Bst2UI	CCWGG	1 cut(s)	310
Bst4CI	ACNGT	3 cut(s)	101, 366, 686
Bst6I	CTCTTC	1 cut(s)	623
BstACI	GRCGYC	2 cut(s)	306, 399
BstAPI	GCANNNNNTGC	1 cut(s)	339
BstC8I	GCNNGC	1 cut(s)	474
BstDEI	CTNAG	2 cut(s)	136, 268
BstF5I	GGATG	2 cut(s)	263, 274
BstFNI	CGCG	1 cut(s)	615
BstH2I	RGCGCY	1 cut(s)	221
BstHHI	GCGC	1 cut(s)	220
BstKTI	GATC	3 cut(s)	22, 52, 274
BstMAI	GTCTC	4 cut(s)	171, 245, 292, 315
BstMBI	GATC	3 cut(s)	19, 49, 271
BstMWI	GCNNNNNNNGC	3 cut(s)	24, 339, 485
BstNI	CCWGG	1 cut(s)	310
BstSCI	CCNGG	2 cut(s)	308, 347
BstSFI	CTRYAG	1 cut(s)	340
BstSLI	GKGCMC	1 cut(s)	457
BstUI	CGCG	1 cut(s)	615
BstV1I	GCAGC	2 cut(s)	431, 463
BsuI	GTATCC	1 cut(s)	674
BsuRI	GGCC	4 cut(s)	92, 204, 352, 373
BtgZI	GCGATG	1 cut(s)	232
BtrI	CACGTC	1 cut(s)	233
BtsCI	GGATG	2 cut(s)	263, 274
BtsIMutI	CAGTG	3 cut(s)	106, 144, 282
BtuMI	TCGCGA	1 cut(s)	615
Cac8I	GCNNGC	1 cut(s)	474
CfoI	GCGC	1 cut(s)	220
Cfr10I	RCCGGY	1 cut(s)	401
Cfr13I	GGNCC	1 cut(s)	371
CseI	GACGC	2 cut(s)	314, 407
Csp6I	GTAC	1 cut(s)	226
CviAII	CATG	4 cut(s)	279, 419, 654, 677
CviQI	GTAC	1 cut(s)	226
DdeI	CTNAG	2 cut(s)	136, 268
DpnI	GATC	3 cut(s)	21, 51, 273
DpnII	GATC	3 cut(s)	19, 49, 271
EaeI	YGGCCR	2 cut(s)	202, 350
Eam1104I	CTCTTC	1 cut(s)	623
EarI	CTCTTC	1 cut(s)	623
Ecl136II	GAGCTC	1 cut(s)	135
Eco24I	GRGCYC	1 cut(s)	137
Eco31I	GGTCTC	1 cut(s)	171
Eco53kI	GAGCTC	1 cut(s)	135
Eco88I	CYCGRG	2 cut(s)	151, 168
EcoICRI	GAGCTC	1 cut(s)	135
EcoRI	GAATTC	1 cut(s)	529
EcoRII	CCWGG	1 cut(s)	308
EcoT22I	ATGCAT	1 cut(s)	659
EcoT38I	GRGCYC	1 cut(s)	137
FaeI	CATG	4 cut(s)	282, 422, 657, 680
FaiI	YATR	8 cut(s)	84, 86, 280, 420, 590, 655, 659, 678
FatI	CATG	4 cut(s)	278, 418, 653, 676
Fnu4HI	GCNGC	2 cut(s)	445, 477
FokI	GGATG	2 cut(s)	250, 261
FriOI	GRGCYC	1 cut(s)	137
Fsp4HI	GCNGC	2 cut(s)	445, 477
FspBI	CTAG	3 cut(s)	24, 54, 600
GlaI	GCGC	1 cut(s)	219
GluI	GCNGC	2 cut(s)	445, 477
HaeII	RGCGCY	1 cut(s)	221
HaeIII	GGCC	4 cut(s)	92, 204, 352, 373
HapII	CCGG	5 cut(s)	201, 330, 349, 402, 423
HgaI	GACGC	2 cut(s)	314, 407
HhaI	GCGC	1 cut(s)	220
Hin1I	GRCGYC	2 cut(s)	306, 399
Hin1II	CATG	4 cut(s)	282, 422, 657, 680
Hin6I	GCGC	1 cut(s)	218
HinP1I	GCGC	1 cut(s)	218
HinfI	GANTC	3 cut(s)	118, 300, 313
HpaII	CCGG	5 cut(s)	201, 330, 349, 402, 423
Hpy166II	GTNNAC	3 cut(s)	97, 362, 455
Hpy188I	TCNGA	2 cut(s)	320, 535
Hpy188III	TCNNGA	3 cut(s)	122, 466, 614
Hpy8I	GTNNAC	3 cut(s)	97, 362, 455
Hpy99I	CGWCG	3 cut(s)	217, 308, 401
HpyAV	CCTTC	4 cut(s)	38, 288, 562, 664
HpyCH4III	ACNGT	3 cut(s)	101, 366, 686
HpyCH4IV	ACGT	1 cut(s)	232
HpyCH4V	TGCA	8 cut(s)	246, 263, 282, 342, 447, 455, 580, 657
HpyF10VI	GCNNNNNNNGC	3 cut(s)	24, 339, 485
HpyF3I	CTNAG	2 cut(s)	136, 268
HpySE526I	ACGT	1 cut(s)	232
Hsp92I	GRCGYC	2 cut(s)	306, 399
Hsp92II	CATG	4 cut(s)	282, 422, 657, 680
HspAI	GCGC	1 cut(s)	218
KpnI	GGTACC	1 cut(s)	229
Kzo9I	GATC	3 cut(s)	19, 49, 271
LmnI	GCTCC	3 cut(s)	15, 550, 622
Lsp1109I	GCAGC	2 cut(s)	431, 463
LweI	GCATC	2 cut(s)	255, 272
MaeI	CTAG	3 cut(s)	24, 54, 600
MaeII	ACGT	1 cut(s)	232
MalI	GATC	3 cut(s)	21, 51, 273
MboI	GATC	3 cut(s)	19, 49, 271
MboII	GAAGA	3 cut(s)	118, 127, 640
MhlI	GDGCHC	3 cut(s)	137, 144, 457
MluCI	AATT	3 cut(s)	69, 529, 699
MlyI	GAGTC	1 cut(s)	294
MnlI	CCTC	9 cut(s)	120, 266, 404, 462, 508, 552, 565, 607, 624
Mph1103I	ATGCAT	1 cut(s)	659
MseI	TTAA	1 cut(s)	68
MspI	CCGG	5 cut(s)	201, 330, 349, 402, 423
MspR9I	CCNGG	2 cut(s)	310, 349
MvaI	CCWGG	1 cut(s)	310
MvnI	CGCG	1 cut(s)	615
MwoI	GCNNNNNNNGC	3 cut(s)	24, 339, 485
NciI	CCSGG	1 cut(s)	349
NdeII	GATC	3 cut(s)	19, 49, 271
NlaIII	CATG	4 cut(s)	282, 422, 657, 680
NlaIV	GGNNCC	2 cut(s)	227, 594
NruI	TCGCGA	1 cut(s)	615
NsiI	ATGCAT	1 cut(s)	659
PfeI	GAWTC	2 cut(s)	118, 313
PflMI	CCANNNNNTGG	1 cut(s)	368
PkrI	GCNGC	2 cut(s)	446, 478
PleI	GAGTC	1 cut(s)	294
PpsI	GAGTC	1 cut(s)	294
Psp124BI	GAGCTC	1 cut(s)	137
Psp6I	CCWGG	1 cut(s)	308
PspGI	CCWGG	1 cut(s)	308
PspN4I	GGNNCC	2 cut(s)	227, 594
PspPI	GGNCC	1 cut(s)	371
PstI	CTGCAG	1 cut(s)	344
RruI	TCGCGA	1 cut(s)	615
RsaI	GTAC	1 cut(s)	227
RsaNI	GTAC	1 cut(s)	226
SacI	GAGCTC	1 cut(s)	137
SaqAI	TTAA	1 cut(s)	68
SatI	GCNGC	2 cut(s)	445, 477
Sau3AI	GATC	3 cut(s)	19, 49, 271
Sau96I	GGNCC	1 cut(s)	371
SchI	GAGTC	1 cut(s)	294
ScrFI	CCNGG	2 cut(s)	310, 349
SduI	GDGCHC	3 cut(s)	137, 144, 457
SetI	ASST	4 cut(s)	137, 235, 258, 418
SfaNI	GCATC	2 cut(s)	255, 272
SfcI	CTRYAG	1 cut(s)	340
Sse9I	AATT	3 cut(s)	69, 529, 699
SsiI	CCGC	1 cut(s)	44
SspMI	CTAG	3 cut(s)	24, 54, 600
SstI	GAGCTC	1 cut(s)	137
StyD4I	CCNGG	2 cut(s)	308, 347
TaaI	ACNGT	3 cut(s)	101, 366, 686
TaiI	ACGT	1 cut(s)	235
TaqI	TCGA	2 cut(s)	303, 396
TasI	AATT	3 cut(s)	69, 529, 699
TfiI	GAWTC	2 cut(s)	118, 313
Tru1I	TTAA	1 cut(s)	68
Tru9I	TTAA	1 cut(s)	68
TscAI	CASTG	3 cut(s)	106, 144, 289
TseI	GCWGC	2 cut(s)	444, 476
TspDTI	ATGAA	2 cut(s)	425, 494
TspGWI	ACGGA	2 cut(s)	304, 347
TspRI	CASTG	3 cut(s)	106, 144, 289
Van91I	CCANNNNNTGG	1 cut(s)	368
VneI	GTGCAC	1 cut(s)	453
XapI	RAATTY	1 cut(s)	529
XspI	CTAG	3 cut(s)	24, 54, 600
Zsp2I	ATGCAT	1 cut(s)	659

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.