Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002408

Physical Location & Seq

Genomic Coordinates Reverse (-)

84628458 .. 84629215

Gene Structure 758 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036789

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGAAATCGACCTCCTTCGATCAATGCCGGCGTTCTGGTTCGAACCCTTTGACAACTCTAACTGCAGCTGAAACGGCCCCAAAGCTTCGATCATCGCTCCAATCTAAAATGCATTGCGGCTGCACTAATACTGCTCAGAAGCAGAAGTTGAGGTCGGATTCGTCGTCGCCGATGAAGCTGAGACCAGTCTCATCGCCGATGAAGTGTAAATTGGCTCGCCGGAACCTCAGTGCTTGTACCAATACTCCTGCAAATGTGAGATTTGGATTGGATAATAAGGAGCATATGAGGATAGTGAAGGAGGCACTGCACTTGTCTACAGTTCCCTCTAGTGTTGCGTGCCGCGACGTGGAGCAGAAGAGGGTTCTGGAGTTCTGCAAGTCATGCATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0022402 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044786 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA_22 Cdc6_C

Protein Analysis

131

Amino Acids

14.39

Weight (kDa)

9.96

Isoelectric Point (pI)

84.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002408)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0117421 RchiOBHm_Chr2g0147571
rosa_laevigata	RLG00000009715 RLG00000036789
rosa_multiflora	Rmu_sc0005551.1_g000001 Rmu_sc0005551.1_g000002 Rmu_sc0006255.1_g000001 Rmu_sc0006255.1_g000006 Rmu_sc0006255.1_g000008 Rmu_sc0006368.1_g000001 Rmu_sc0008753.1_g000001 Rmu_sc0010335.1_g000001 Rmu_sc0010420.1_g000002 Rmu_sc0013459.1_g000003 Rmu_sc0029520.1_g000001 Rmu_sc0031364.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029450 Rroxscaffold_1G00029500 Rroxscaffold_1G00029570 Rroxscaffold_1G00029580 Rroxscaffold_1G00029590 Rroxscaffold_5G00379910 Rroxscaffold_7G00209950
rosa_rugosa	Rorug01G0060000 Rorug03G0369200.1 Rorug05G0426400 Rorug05G0426500 Rorug05G0426600
rosa_samantha	Rh1AG147300 Rh1BG061700 Rh1CG138600 Rh2BG280100 Rh2BG537700 Rh2CG258400 Rh2CG272200 Rh2DG275000 Rh2DG290600 Rh2DG294200 Rh2DG294400 Rh5BG473700 Rh7AG238100 Rh7CG254700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	317
AccII	CGCG	1 cut(s)	345
AciI	CCGC	2 cut(s)	117, 343
AfaI	GTAC	1 cut(s)	238
AfiI	CCNNNNNNNGG	1 cut(s)	349
AjiI	CACGTC	1 cut(s)	349
AjuI	GAANNNNNNNTTGG	2 cut(s)	194, 226
AluBI	AGCT	3 cut(s)	68, 85, 178
AluI	AGCT	3 cut(s)	68, 85, 178
Alw26I	GTCTC	2 cut(s)	175, 193
AoxI	GGCC	1 cut(s)	75
ApeKI	GCWGC	2 cut(s)	65, 120
AspS9I	GGNCC	1 cut(s)	76
AsuII	TTCGAA	1 cut(s)	41
BbvI	GCAGC	2 cut(s)	77, 107
BceAI	ACGGC	1 cut(s)	90
BcoDI	GTCTC	2 cut(s)	175, 193
BfaI	CTAG	1 cut(s)	330
BfmI	CTRYAG	2 cut(s)	63, 318
BisI	GCNGC	4 cut(s)	66, 118, 121, 343
BlsI	GCNGC	4 cut(s)	67, 119, 122, 344
BmgBI	CACGTC	1 cut(s)	349
BmgT120I	GGNCC	1 cut(s)	76
BmiI	GGNNCC	2 cut(s)	78, 224
BpmI	CTGGAG	1 cut(s)	389
Bpu14I	TTCGAA	1 cut(s)	41
BsaI	GGTCTC	1 cut(s)	175
BsaXI	ACNNNNNCTCC	2 cut(s)	229, 259
Bsc4I	CCNNNNNNNGG	1 cut(s)	349
Bse118I	RCCGGY	1 cut(s)	27
Bse1I	ACTGG	1 cut(s)	185
Bse3DI	GCAATG	1 cut(s)	112
BseLI	CCNNNNNNNGG	1 cut(s)	349
BseMI	GCAATG	1 cut(s)	112
BseMII	CTCAG	3 cut(s)	149, 170, 241
BseNI	ACTGG	1 cut(s)	185
BseXI	GCAGC	2 cut(s)	77, 107
BsgI	GTGCAG	2 cut(s)	106, 293
Bsh1236I	CGCG	1 cut(s)	345
BshFI	GGCC	1 cut(s)	77
BsiSI	CCGG	2 cut(s)	28, 220
BslI	CCNNNNNNNGG	1 cut(s)	349
BsmAI	GTCTC	2 cut(s)	175, 193
BsnI	GGCC	1 cut(s)	77
Bso31I	GGTCTC	1 cut(s)	175
Bsp119I	TTCGAA	1 cut(s)	41
Bsp143I	GATC	2 cut(s)	19, 89
BspACI	CCGC	2 cut(s)	117, 343
BspANI	GGCC	1 cut(s)	77
BspCNI	CTCAG	3 cut(s)	148, 171, 240
BspFNI	CGCG	1 cut(s)	345
BspLI	GGNNCC	2 cut(s)	78, 224
BspMAI	CTGCAG	1 cut(s)	67
BspT104I	TTCGAA	1 cut(s)	41
BspTNI	GGTCTC	1 cut(s)	175
BsrDI	GCAATG	1 cut(s)	112
BsrFI	RCCGGY	1 cut(s)	27
BsrI	ACTGG	1 cut(s)	185
BssAI	RCCGGY	1 cut(s)	27
BssMI	GATC	2 cut(s)	19, 89
Bst4CI	ACNGT	1 cut(s)	322
Bst6I	CTCTTC	1 cut(s)	353
BstAPI	GCANNNNNTGC	1 cut(s)	384
BstBI	TTCGAA	1 cut(s)	41
BstC8I	GCNNGC	3 cut(s)	29, 217, 340
BstDEI	CTNAG	3 cut(s)	135, 179, 227
BstFNI	CGCG	1 cut(s)	345
BstKTI	GATC	2 cut(s)	22, 92
BstMAI	GTCTC	2 cut(s)	175, 193
BstMBI	GATC	2 cut(s)	19, 89
BstMWI	GCNNNNNNNGC	3 cut(s)	74, 175, 384
BstSFI	CTRYAG	2 cut(s)	63, 318
BstUI	CGCG	1 cut(s)	345
BstV1I	GCAGC	2 cut(s)	77, 107
BsuRI	GGCC	1 cut(s)	77
BtgZI	GCGATG	2 cut(s)	78, 177
BtrI	CACGTC	1 cut(s)	349
BtsI	GCAGTG	1 cut(s)	305
BtsIMutI	CAGTG	2 cut(s)	235, 305
Cac8I	GCNNGC	3 cut(s)	29, 217, 340
Cfr10I	RCCGGY	1 cut(s)	27
Cfr13I	GGNCC	1 cut(s)	76
Csp6I	GTAC	1 cut(s)	237
CviAII	CATG	1 cut(s)	384
CviJI	RGCY	6 cut(s)	68, 77, 85, 120, 178, 215
CviKI_1	RGCY	6 cut(s)	68, 77, 85, 120, 178, 215
CviQI	GTAC	1 cut(s)	237
DdeI	CTNAG	3 cut(s)	135, 179, 227
DpnI	GATC	2 cut(s)	21, 91
DpnII	GATC	2 cut(s)	19, 89
Eam1104I	CTCTTC	1 cut(s)	353
EarI	CTCTTC	1 cut(s)	353
Eco31I	GGTCTC	1 cut(s)	175
EcoT22I	ATGCAT	2 cut(s)	114, 389
FaeI	CATG	1 cut(s)	387
FaiI	YATR	5 cut(s)	285, 287, 385, 389, 391
FatI	CATG	1 cut(s)	383
FauNDI	CATATG	1 cut(s)	285
FblI	GTMKAC	1 cut(s)	317
Fnu4HI	GCNGC	4 cut(s)	66, 118, 121, 343
Fsp4HI	GCNGC	4 cut(s)	66, 118, 121, 343
FspBI	CTAG	1 cut(s)	330
GluI	GCNGC	4 cut(s)	66, 118, 121, 343
GsuI	CTGGAG	1 cut(s)	389
HaeIII	GGCC	1 cut(s)	77
HapII	CCGG	2 cut(s)	28, 220
Hin1II	CATG	1 cut(s)	387
HindIII	AAGCTT	1 cut(s)	83
HinfI	GANTC	1 cut(s)	158
HpaII	CCGG	2 cut(s)	28, 220
Hpy166II	GTNNAC	1 cut(s)	318
Hpy188I	TCNGA	2 cut(s)	138, 157
Hpy188III	TCNNGA	1 cut(s)	368
Hpy8I	GTNNAC	1 cut(s)	318
Hpy99I	CGWCG	3 cut(s)	166, 169, 350
HpyAV	CCTTC	2 cut(s)	25, 292
HpyCH4III	ACNGT	1 cut(s)	322
HpyCH4IV	ACGT	1 cut(s)	348
HpyCH4V	TGCA	7 cut(s)	65, 112, 123, 251, 310, 378, 387
HpyF10VI	GCNNNNNNNGC	3 cut(s)	74, 175, 384
HpyF3I	CTNAG	3 cut(s)	135, 179, 227
HpySE526I	ACGT	1 cut(s)	348
Hsp92II	CATG	1 cut(s)	387
KroI	GCCGGC	1 cut(s)	27
KroNI	GCCGGC	1 cut(s)	29
Kzo9I	GATC	2 cut(s)	19, 89
LmnI	GCTCC	3 cut(s)	102, 280, 352
LpnPI	CCDG	6 cut(s)	21, 41, 198, 233, 261, 353
Lsp1109I	GCAGC	2 cut(s)	77, 107
MaeI	CTAG	1 cut(s)	330
MaeII	ACGT	1 cut(s)	348
MalI	GATC	2 cut(s)	21, 91
MboI	GATC	2 cut(s)	19, 89
MboII	GAAGA	1 cut(s)	370
MluCI	AATT	1 cut(s)	209
MmeI	TCCRAC	1 cut(s)	135
MnlI	CCTC	7 cut(s)	22, 144, 236, 282, 295, 337, 354
Mph1103I	ATGCAT	2 cut(s)	114, 389
MroNI	GCCGGC	1 cut(s)	27
MspA1I	CMGCKG	1 cut(s)	68
MspI	CCGG	2 cut(s)	28, 220
MvnI	CGCG	1 cut(s)	345
MwoI	GCNNNNNNNGC	3 cut(s)	74, 175, 384
NaeI	GCCGGC	1 cut(s)	29
NdeI	CATATG	1 cut(s)	285
NdeII	GATC	2 cut(s)	19, 89
NgoMIV	GCCGGC	1 cut(s)	27
NlaIII	CATG	1 cut(s)	387
NlaIV	GGNNCC	2 cut(s)	78, 224
NsiI	ATGCAT	2 cut(s)	114, 389
NspV	TTCGAA	1 cut(s)	41
PcsI	WCGNNNNNNNCGW	2 cut(s)	161, 167
PdiI	GCCGGC	1 cut(s)	29
PfeI	GAWTC	1 cut(s)	158
PkrI	GCNGC	4 cut(s)	67, 119, 122, 344
PspN4I	GGNNCC	2 cut(s)	78, 224
PspPI	GGNCC	1 cut(s)	76
PstI	CTGCAG	1 cut(s)	67
PvuII	CAGCTG	1 cut(s)	68
RsaI	GTAC	1 cut(s)	238
RsaNI	GTAC	1 cut(s)	237
SatI	GCNGC	4 cut(s)	66, 118, 121, 343
Sau3AI	GATC	2 cut(s)	19, 89
Sau96I	GGNCC	1 cut(s)	76
SetI	ASST	7 cut(s)	14, 70, 87, 155, 180, 228, 351
SfcI	CTRYAG	2 cut(s)	63, 318
SfuI	TTCGAA	1 cut(s)	41
Sse9I	AATT	1 cut(s)	209
SsiI	CCGC	2 cut(s)	117, 343
SspMI	CTAG	1 cut(s)	330
TaaI	ACNGT	1 cut(s)	322
TaiI	ACGT	1 cut(s)	351
TaqI	TCGA	4 cut(s)	8, 18, 41, 88
TasI	AATT	1 cut(s)	209
TauI	GCSGC	2 cut(s)	120, 345
TfiI	GAWTC	1 cut(s)	158
TscAI	CASTG	2 cut(s)	235, 312
TseI	GCWGC	2 cut(s)	65, 120
TspDTI	ATGAA	3 cut(s)	17, 188, 215
TspRI	CASTG	2 cut(s)	235, 312
XmiI	GTMKAC	1 cut(s)	317
XspI	CTAG	1 cut(s)	330
Zsp2I	ATGCAT	2 cut(s)	114, 389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.