Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002408

Physical Location & Seq

Genomic Coordinates Reverse (-)

30590621 .. 30591304

Gene Structure 684 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG280100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGAAATCGACCTCCTCCGATCGATGCCGGTGTTCTGGTTGGAATCCTTTGACGACTCTAACTGCAGCTGAAACGGCCCCAAAGCTCCGATCATCGTTCCGATCTAAAATGAATGGCGGTTGCGCTAATACTCCTCAGAAGCGGAAGTTAAGGTCGGATTCGTCGTCGCCGATGAAGCCGAGACTGGTCTCATCGCCGATGAAGTGTAAATTGGCTTGCCGAAACCTCAGTGCTTGCATCAATACTCCTGCAAATGGAATTGAGAAGTATTTCAGTCAGAAAAAGCCTCAAGCCTATTGCAAACCACCGGTTGTTGTTATGCCGAACTGGAATCCCAGAGGCAAGCACTGTTCAAGCAAAGTCAGACTAAGTTTTGGGAGAAAATGTGTTTGTTTTGTTTTTAAATTAGCAAATTGTGTTGAATTTGTAGATAAGGAGCAGATGAGGATAGTGAAGGAGGCATTGCACTTGTCTACGGTCCCCTCTAGTGTTGCATGCCGCGACGTGGAGCAGAAGGTTCTGGAGTTCTGCAAGTCATACATAGAGCAAGAGAAGGCTCATGGATACAGTTTTGGATTAGGTAGAAACTCATTTGTTGATATTTGTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0022402 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044786 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA_22 Cdc6_C

Protein Analysis

203

Amino Acids

22.72

Weight (kDa)

9.7

Isoelectric Point (pI)

48.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002408)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0117421 RchiOBHm_Chr2g0147571
rosa_laevigata	RLG00000009715 RLG00000036789
rosa_multiflora	Rmu_sc0005551.1_g000001 Rmu_sc0005551.1_g000002 Rmu_sc0006255.1_g000001 Rmu_sc0006255.1_g000006 Rmu_sc0006255.1_g000008 Rmu_sc0006368.1_g000001 Rmu_sc0008753.1_g000001 Rmu_sc0010335.1_g000001 Rmu_sc0010420.1_g000002 Rmu_sc0013459.1_g000003 Rmu_sc0029520.1_g000001 Rmu_sc0031364.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029450 Rroxscaffold_1G00029500 Rroxscaffold_1G00029570 Rroxscaffold_1G00029580 Rroxscaffold_1G00029590 Rroxscaffold_5G00379910 Rroxscaffold_7G00209950
rosa_rugosa	Rorug01G0060000 Rorug03G0369200.1 Rorug05G0426400 Rorug05G0426500 Rorug05G0426600
rosa_samantha	Rh1AG147300 Rh1BG061700 Rh1CG138600 Rh2BG280100 Rh2BG537700 Rh2CG258400 Rh2CG272200 Rh2DG275000 Rh2DG290600 Rh2DG294200 Rh2DG294400 Rh5BG473700 Rh7AG238100 Rh7CG254700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	473
AccII	CGCG	1 cut(s)	501
AciI	CCGC	3 cut(s)	117, 142, 499
AcsI	RAATTY	1 cut(s)	422
AfiI	CCNNNNNNNGG	2 cut(s)	254, 505
AgeI	ACCGGT	1 cut(s)	307
AgsI	TTSAA	2 cut(s)	354, 422
AjiI	CACGTC	1 cut(s)	505
AjuI	GAANNNNNNNTTGG	2 cut(s)	194, 226
AluBI	AGCT	2 cut(s)	68, 85
AluI	AGCT	2 cut(s)	68, 85
Alw26I	GTCTC	2 cut(s)	175, 193
AoxI	GGCC	1 cut(s)	75
ApeKI	GCWGC	1 cut(s)	65
ApoI	RAATTY	1 cut(s)	422
AsiGI	ACCGGT	1 cut(s)	307
Asp700I	GAANNNNTTC	1 cut(s)	269
AspLEI	GCGC	1 cut(s)	125
AspS9I	GGNCC	2 cut(s)	76, 478
AvaII	GGWCC	1 cut(s)	478
BbvI	GCAGC	1 cut(s)	77
BceAI	ACGGC	1 cut(s)	90
BciVI	GTATCC	1 cut(s)	557
BcoDI	GTCTC	2 cut(s)	175, 193
BfaI	CTAG	1 cut(s)	486
BfmI	CTRYAG	1 cut(s)	63
BfuI	GTATCC	1 cut(s)	557
BisI	GCNGC	2 cut(s)	66, 499
BlsI	GCNGC	2 cut(s)	67, 500
Bme18I	GGWCC	1 cut(s)	478
BmgBI	CACGTC	1 cut(s)	505
BmgT120I	GGNCC	2 cut(s)	76, 478
BmiI	GGNNCC	2 cut(s)	78, 480
BmsI	GCATC	2 cut(s)	14, 246
BpmI	CTGGAG	1 cut(s)	542
BpuEI	CTTGAG	1 cut(s)	273
Bsa29I	ATCGAT	1 cut(s)	22
BsaI	GGTCTC	1 cut(s)	193
BsaWI	WCCGGW	1 cut(s)	307
BsaXI	ACNNNNNCTCC	2 cut(s)	370, 400
Bsc4I	CCNNNNNNNGG	2 cut(s)	254, 505
Bse118I	RCCGGY	2 cut(s)	27, 307
Bse1I	ACTGG	2 cut(s)	189, 332
Bse3DI	GCAATG	1 cut(s)	461
BseCI	ATCGAT	1 cut(s)	22
BseLI	CCNNNNNNNGG	2 cut(s)	254, 505
BseMI	GCAATG	1 cut(s)	461
BseMII	CTCAG	2 cut(s)	149, 241
BseNI	ACTGG	2 cut(s)	189, 332
BseRI	GAGGAG	2 cut(s)	4, 123
BseXI	GCAGC	1 cut(s)	77
Bsh1236I	CGCG	1 cut(s)	501
Bsh1285I	CGRYCG	1 cut(s)	22
BshFI	GGCC	1 cut(s)	77
BshTI	ACCGGT	1 cut(s)	307
BshVI	ATCGAT	1 cut(s)	22
BsiEI	CGRYCG	1 cut(s)	22
BsiSI	CCGG	2 cut(s)	28, 308
BslFI	GGGAC	1 cut(s)	464
BslI	CCNNNNNNNGG	2 cut(s)	254, 505
BsmAI	GTCTC	2 cut(s)	175, 193
BsmFI	GGGAC	1 cut(s)	464
BsnI	GGCC	1 cut(s)	77
Bso31I	GGTCTC	1 cut(s)	193
Bsp143I	GATC	3 cut(s)	19, 89, 101
BspACI	CCGC	3 cut(s)	117, 142, 499
BspANI	GGCC	1 cut(s)	77
BspCNI	CTCAG	2 cut(s)	148, 240
BspDI	ATCGAT	1 cut(s)	22
BspFNI	CGCG	1 cut(s)	501
BspLI	GGNNCC	2 cut(s)	78, 480
BspMAI	CTGCAG	1 cut(s)	67
BspTNI	GGTCTC	1 cut(s)	193
BsrDI	GCAATG	1 cut(s)	461
BsrFI	RCCGGY	2 cut(s)	27, 307
BsrI	ACTGG	2 cut(s)	189, 332
BssAI	RCCGGY	2 cut(s)	27, 307
BssMI	GATC	3 cut(s)	19, 89, 101
Bst4CI	ACNGT	3 cut(s)	350, 478, 569
BstC8I	GCNNGC	4 cut(s)	217, 235, 344, 496
BstDEI	CTNAG	3 cut(s)	135, 227, 368
BstFNI	CGCG	1 cut(s)	501
BstHHI	GCGC	1 cut(s)	125
BstKTI	GATC	3 cut(s)	22, 92, 104
BstMAI	GTCTC	2 cut(s)	175, 193
BstMBI	GATC	3 cut(s)	19, 89, 101
BstMCI	CGRYCG	1 cut(s)	22
BstMWI	GCNNNNNNNGC	2 cut(s)	74, 175
BstNSI	RCATGY	1 cut(s)	498
BstSFI	CTRYAG	1 cut(s)	63
BstUI	CGCG	1 cut(s)	501
BstV1I	GCAGC	1 cut(s)	77
Bsu15I	ATCGAT	1 cut(s)	22
BsuI	GTATCC	1 cut(s)	557
BsuRI	GGCC	1 cut(s)	77
BsuTUI	ATCGAT	1 cut(s)	22
BtgZI	GCGATG	1 cut(s)	177
BtrI	CACGTC	1 cut(s)	505
BtsIMutI	CAGTG	2 cut(s)	235, 346
Cac8I	GCNNGC	4 cut(s)	217, 235, 344, 496
CfoI	GCGC	1 cut(s)	125
Cfr10I	RCCGGY	2 cut(s)	27, 307
Cfr13I	GGNCC	2 cut(s)	76, 478
ClaI	ATCGAT	1 cut(s)	22
CspAI	ACCGGT	1 cut(s)	307
CviAII	CATG	2 cut(s)	495, 560
CviJI	RGCY	8 cut(s)	68, 77, 85, 178, 215, 286, 293, 557
CviKI_1	RGCY	8 cut(s)	68, 77, 85, 178, 215, 286, 293, 557
DdeI	CTNAG	3 cut(s)	135, 227, 368
DpnI	GATC	3 cut(s)	21, 91, 103
DpnII	GATC	3 cut(s)	19, 89, 101
DraI	TTTAAA	1 cut(s)	403
Eco31I	GGTCTC	1 cut(s)	193
Eco47I	GGWCC	1 cut(s)	478
FaeI	CATG	2 cut(s)	498, 563
FaiI	YATR	5 cut(s)	320, 496, 538, 542, 561
FaqI	GGGAC	1 cut(s)	464
FatI	CATG	2 cut(s)	494, 559
FblI	GTMKAC	1 cut(s)	473
Fnu4HI	GCNGC	2 cut(s)	66, 499
Fsp4HI	GCNGC	2 cut(s)	66, 499
FspBI	CTAG	1 cut(s)	486
GlaI	GCGC	1 cut(s)	124
GluI	GCNGC	2 cut(s)	66, 499
GsuI	CTGGAG	1 cut(s)	542
HaeIII	GGCC	1 cut(s)	77
HapII	CCGG	2 cut(s)	28, 308
HhaI	GCGC	1 cut(s)	125
Hin1II	CATG	2 cut(s)	498, 563
Hin6I	GCGC	1 cut(s)	123
HinP1I	GCGC	1 cut(s)	123
HinfI	GANTC	4 cut(s)	43, 55, 158, 331
HpaII	CCGG	2 cut(s)	28, 308
Hpy166II	GTNNAC	1 cut(s)	474
Hpy188I	TCNGA	7 cut(s)	19, 89, 101, 138, 157, 279, 365
Hpy188III	TCNNGA	1 cut(s)	521
Hpy8I	GTNNAC	1 cut(s)	474
Hpy99I	CGWCG	3 cut(s)	166, 169, 506
HpyAV	CCTTC	3 cut(s)	448, 508, 547
HpyCH4III	ACNGT	3 cut(s)	350, 478, 569
HpyCH4IV	ACGT	1 cut(s)	504
HpyCH4V	TGCA	7 cut(s)	65, 237, 251, 300, 466, 494, 531
HpyF10VI	GCNNNNNNNGC	2 cut(s)	74, 175
HpyF3I	CTNAG	3 cut(s)	135, 227, 368
HpySE526I	ACGT	1 cut(s)	504
Hsp92II	CATG	2 cut(s)	498, 563
HspAI	GCGC	1 cut(s)	123
Kzo9I	GATC	3 cut(s)	19, 89, 101
LmnI	GCTCC	3 cut(s)	90, 436, 508
LpnPI	CCDG	8 cut(s)	21, 41, 170, 261, 313, 321, 349, 506
Lsp1109I	GCAGC	1 cut(s)	77
LweI	GCATC	2 cut(s)	14, 246
MaeI	CTAG	1 cut(s)	486
MaeII	ACGT	1 cut(s)	504
MalI	GATC	3 cut(s)	21, 91, 103
MboI	GATC	3 cut(s)	19, 89, 101
MluCI	AATT	5 cut(s)	209, 258, 404, 412, 422
MlyI	GAGTC	1 cut(s)	49
MmeI	TCCRAC	2 cut(s)	20, 135
MnlI	CCTC	9 cut(s)	22, 25, 144, 236, 297, 332, 438, 451, 493
MroXI	GAANNNNTTC	1 cut(s)	269
MseI	TTAA	2 cut(s)	149, 402
MspA1I	CMGCKG	1 cut(s)	68
MspI	CCGG	2 cut(s)	28, 308
MvnI	CGCG	1 cut(s)	501
MwoI	GCNNNNNNNGC	2 cut(s)	74, 175
NdeII	GATC	3 cut(s)	19, 89, 101
NlaIII	CATG	2 cut(s)	498, 563
NlaIV	GGNNCC	2 cut(s)	78, 480
NmeAIII	GCCGAG	1 cut(s)	204
NspI	RCATGY	1 cut(s)	498
PaeI	GCATGC	1 cut(s)	498
PcsI	WCGNNNNNNNCGW	2 cut(s)	161, 167
PdmI	GAANNNNTTC	1 cut(s)	269
PfeI	GAWTC	3 cut(s)	43, 158, 331
PinAI	ACCGGT	1 cut(s)	307
PkrI	GCNGC	2 cut(s)	67, 500
Ple19I	CGATCG	1 cut(s)	22
PleI	GAGTC	1 cut(s)	49
PpsI	GAGTC	1 cut(s)	49
PspN4I	GGNNCC	2 cut(s)	78, 480
PspPI	GGNCC	2 cut(s)	76, 478
PstI	CTGCAG	1 cut(s)	67
PvuI	CGATCG	1 cut(s)	22
PvuII	CAGCTG	1 cut(s)	68
SaqAI	TTAA	2 cut(s)	149, 402
SatI	GCNGC	2 cut(s)	66, 499
Sau3AI	GATC	3 cut(s)	19, 89, 101
Sau96I	GGNCC	2 cut(s)	76, 478
SchI	GAGTC	1 cut(s)	49
SetI	ASST	8 cut(s)	14, 70, 87, 155, 228, 507, 519, 583
SfaNI	GCATC	2 cut(s)	14, 246
SfcI	CTRYAG	1 cut(s)	63
SinI	GGWCC	1 cut(s)	478
SmlI	CTYRAG	1 cut(s)	288
SmoI	CTYRAG	1 cut(s)	288
SphI	GCATGC	1 cut(s)	498
Sse9I	AATT	5 cut(s)	209, 258, 404, 412, 422
SsiI	CCGC	3 cut(s)	117, 142, 499
SspMI	CTAG	1 cut(s)	486
TaaI	ACNGT	3 cut(s)	350, 478, 569
TaiI	ACGT	1 cut(s)	507
TaqI	TCGA	2 cut(s)	8, 22
TasI	AATT	5 cut(s)	209, 258, 404, 412, 422
TauI	GCSGC	1 cut(s)	501
TfiI	GAWTC	3 cut(s)	43, 158, 331
Tru1I	TTAA	2 cut(s)	149, 402
Tru9I	TTAA	2 cut(s)	149, 402
TscAI	CASTG	2 cut(s)	235, 353
TseI	GCWGC	1 cut(s)	65
TspDTI	ATGAA	4 cut(s)	17, 125, 188, 215
TspRI	CASTG	2 cut(s)	235, 353
VpaK11BI	GGWCC	1 cut(s)	478
XapI	RAATTY	1 cut(s)	422
XceI	RCATGY	1 cut(s)	498
XmiI	GTMKAC	1 cut(s)	473
XmnI	GAANNNNTTC	1 cut(s)	269
XspI	CTAG	1 cut(s)	486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.