Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0002408

Physical Location & Seq

Genomic Coordinates Reverse (-)

27820208 .. 27820873

Gene Structure 666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG147300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGAAATCGACCTCTTCCGATCGATGCCGGCGTTCTGGTTGGAATCCTTTAACGACTCTAATTGCAGCTGAAACGACCCCAAAGCTCCGATCATCGTTTCGATCTAAAATGAATGGCGGCTGCACTAATACTCCTCAGAAGCGGAAGTTGAGGTCAGATTCATCGTCGCCGATGAAGCCGAGACCTGTCTCATCGCCGATGAAGTGCAAATTGGCTCGCCGGAACCTCAGTGCTTGCATCAATACTCCTACAAATGGAATTGAGAAGTATTTCAGTCAGAAAAAGCCTCAAGCCTATTGCAAACCACCGGTTGTTGTTAAGCCAAACTGGAATCCCAGAGATAAGGAGCAGATGAGGATAGTGAAGGAGGCATTGCACTTGTCTACGGTTCCCTCTAGTGTTGCGTGCCACGACGTGGAGCAAAAGAGGGTTCTGGAGTTTTGCAAGTCATGCATAGAGCAAGAGAAGGCTCATGGATACAAGTTATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0022402 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044786 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA_22 Cdc6_C

Protein Analysis

163

Amino Acids

18.43

Weight (kDa)

9.98

Isoelectric Point (pI)

69.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002408)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0117421 RchiOBHm_Chr2g0147571
rosa_laevigata	RLG00000009715 RLG00000036789
rosa_multiflora	Rmu_sc0005551.1_g000001 Rmu_sc0005551.1_g000002 Rmu_sc0006255.1_g000001 Rmu_sc0006255.1_g000006 Rmu_sc0006255.1_g000008 Rmu_sc0006368.1_g000001 Rmu_sc0008753.1_g000001 Rmu_sc0010335.1_g000001 Rmu_sc0010420.1_g000002 Rmu_sc0013459.1_g000003 Rmu_sc0029520.1_g000001 Rmu_sc0031364.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029450 Rroxscaffold_1G00029500 Rroxscaffold_1G00029570 Rroxscaffold_1G00029580 Rroxscaffold_1G00029590 Rroxscaffold_5G00379910 Rroxscaffold_7G00209950
rosa_rugosa	Rorug01G0060000 Rorug03G0369200.1 Rorug05G0426400 Rorug05G0426500 Rorug05G0426600
rosa_samantha	Rh1AG147300 Rh1BG061700 Rh1CG138600 Rh2BG280100 Rh2BG537700 Rh2CG258400 Rh2CG272200 Rh2DG275000 Rh2DG290600 Rh2DG294200 Rh2DG294400 Rh5BG473700 Rh7AG238100 Rh7CG254700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	415
AccI	GTMKAC	1 cut(s)	383
AciI	CCGC	2 cut(s)	117, 142
AdeI	CACNNNGTG	1 cut(s)	415
AfiI	CCNNNNNNNGG	2 cut(s)	254, 415
AgeI	ACCGGT	1 cut(s)	307
AjiI	CACGTC	1 cut(s)	415
AjuI	GAANNNNNNNTTGG	2 cut(s)	194, 226
AluBI	AGCT	2 cut(s)	68, 85
AluI	AGCT	2 cut(s)	68, 85
Alw26I	GTCTC	2 cut(s)	175, 193
ApeKI	GCWGC	2 cut(s)	65, 120
AsiGI	ACCGGT	1 cut(s)	307
Asp700I	GAANNNNTTC	1 cut(s)	269
BbvI	GCAGC	2 cut(s)	77, 107
BciVI	GTATCC	1 cut(s)	470
BcoDI	GTCTC	2 cut(s)	175, 193
BfaI	CTAG	1 cut(s)	396
BfuI	GTATCC	1 cut(s)	470
BisI	GCNGC	3 cut(s)	66, 118, 121
BlsI	GCNGC	3 cut(s)	67, 119, 122
BmgBI	CACGTC	1 cut(s)	415
BmiI	GGNNCC	2 cut(s)	224, 390
BmsI	GCATC	2 cut(s)	14, 246
BpmI	CTGGAG	1 cut(s)	455
BpuEI	CTTGAG	1 cut(s)	273
Bsa29I	ATCGAT	1 cut(s)	22
BsaI	GGTCTC	1 cut(s)	175
BsaWI	WCCGGW	1 cut(s)	307
BsaXI	ACNNNNNCTCC	2 cut(s)	115, 145
Bsc4I	CCNNNNNNNGG	2 cut(s)	254, 415
Bse118I	RCCGGY	2 cut(s)	27, 307
Bse1I	ACTGG	1 cut(s)	332
Bse3DI	GCAATG	1 cut(s)	371
BseCI	ATCGAT	1 cut(s)	22
BseLI	CCNNNNNNNGG	2 cut(s)	254, 415
BseMI	GCAATG	1 cut(s)	371
BseMII	CTCAG	2 cut(s)	149, 241
BseNI	ACTGG	1 cut(s)	332
BseRI	GAGGAG	1 cut(s)	123
BseXI	GCAGC	2 cut(s)	77, 107
BsgI	GTGCAG	1 cut(s)	106
Bsh1285I	CGRYCG	1 cut(s)	22
BshTI	ACCGGT	1 cut(s)	307
BshVI	ATCGAT	1 cut(s)	22
BsiEI	CGRYCG	1 cut(s)	22
BsiSI	CCGG	3 cut(s)	28, 220, 308
BslI	CCNNNNNNNGG	2 cut(s)	254, 415
BsmAI	GTCTC	2 cut(s)	175, 193
Bso31I	GGTCTC	1 cut(s)	175
Bsp143I	GATC	3 cut(s)	19, 89, 101
BspACI	CCGC	2 cut(s)	117, 142
BspCNI	CTCAG	2 cut(s)	148, 240
BspDI	ATCGAT	1 cut(s)	22
BspLI	GGNNCC	2 cut(s)	224, 390
BspTNI	GGTCTC	1 cut(s)	175
BsrDI	GCAATG	1 cut(s)	371
BsrFI	RCCGGY	2 cut(s)	27, 307
BsrI	ACTGG	1 cut(s)	332
BssAI	RCCGGY	2 cut(s)	27, 307
BssMI	GATC	3 cut(s)	19, 89, 101
Bst4CI	ACNGT	1 cut(s)	388
Bst6I	CTCTTC	1 cut(s)	19
BstAPI	GCANNNNNTGC	1 cut(s)	450
BstC8I	GCNNGC	4 cut(s)	29, 217, 235, 406
BstDEI	CTNAG	2 cut(s)	135, 227
BstKTI	GATC	3 cut(s)	22, 92, 104
BstMAI	GTCTC	2 cut(s)	175, 193
BstMBI	GATC	3 cut(s)	19, 89, 101
BstMCI	CGRYCG	1 cut(s)	22
BstMWI	GCNNNNNNNGC	2 cut(s)	175, 450
BstV1I	GCAGC	2 cut(s)	77, 107
Bsu15I	ATCGAT	1 cut(s)	22
BsuI	GTATCC	1 cut(s)	470
BsuTUI	ATCGAT	1 cut(s)	22
BtgZI	GCGATG	1 cut(s)	177
BtrI	CACGTC	1 cut(s)	415
BtsIMutI	CAGTG	1 cut(s)	235
Cac8I	GCNNGC	4 cut(s)	29, 217, 235, 406
Cfr10I	RCCGGY	2 cut(s)	27, 307
ClaI	ATCGAT	1 cut(s)	22
CspAI	ACCGGT	1 cut(s)	307
CviAII	CATG	2 cut(s)	450, 473
CviJI	RGCY	9 cut(s)	68, 85, 120, 178, 215, 286, 293, 322, 470
CviKI_1	RGCY	9 cut(s)	68, 85, 120, 178, 215, 286, 293, 322, 470
DdeI	CTNAG	2 cut(s)	135, 227
DpnI	GATC	3 cut(s)	21, 91, 103
DpnII	GATC	3 cut(s)	19, 89, 101
DraIII	CACNNNGTG	1 cut(s)	415
Eam1104I	CTCTTC	1 cut(s)	19
EarI	CTCTTC	1 cut(s)	19
Eco31I	GGTCTC	1 cut(s)	175
EcoT22I	ATGCAT	1 cut(s)	455
FaeI	CATG	2 cut(s)	453, 476
FaiI	YATR	4 cut(s)	451, 455, 474, 487
FatI	CATG	2 cut(s)	449, 472
FblI	GTMKAC	1 cut(s)	383
Fnu4HI	GCNGC	3 cut(s)	66, 118, 121
Fsp4HI	GCNGC	3 cut(s)	66, 118, 121
FspBI	CTAG	1 cut(s)	396
GluI	GCNGC	3 cut(s)	66, 118, 121
GsuI	CTGGAG	1 cut(s)	455
HapII	CCGG	3 cut(s)	28, 220, 308
Hin1II	CATG	2 cut(s)	453, 476
HinfI	GANTC	4 cut(s)	43, 55, 158, 331
HpaII	CCGG	3 cut(s)	28, 220, 308
Hpy166II	GTNNAC	1 cut(s)	384
Hpy188I	TCNGA	5 cut(s)	19, 89, 138, 157, 279
Hpy188III	TCNNGA	1 cut(s)	434
Hpy8I	GTNNAC	1 cut(s)	384
Hpy99I	CGWCG	2 cut(s)	169, 416
HpyAV	CCTTC	2 cut(s)	358, 460
HpyCH4III	ACNGT	1 cut(s)	388
HpyCH4IV	ACGT	1 cut(s)	414
HpyCH4V	TGCA	8 cut(s)	65, 123, 207, 237, 300, 376, 444, 453
HpyF10VI	GCNNNNNNNGC	2 cut(s)	175, 450
HpyF3I	CTNAG	2 cut(s)	135, 227
HpySE526I	ACGT	1 cut(s)	414
Hsp92II	CATG	2 cut(s)	453, 476
KroI	GCCGGC	1 cut(s)	27
KroNI	GCCGGC	1 cut(s)	29
Kzo9I	GATC	3 cut(s)	19, 89, 101
LmnI	GCTCC	3 cut(s)	90, 346, 418
LpnPI	CCDG	8 cut(s)	21, 41, 198, 233, 313, 321, 349, 419
Lsp1109I	GCAGC	2 cut(s)	77, 107
LweI	GCATC	2 cut(s)	14, 246
MaeI	CTAG	1 cut(s)	396
MaeII	ACGT	1 cut(s)	414
MalI	GATC	3 cut(s)	21, 91, 103
MboI	GATC	3 cut(s)	19, 89, 101
MboII	GAAGA	1 cut(s)	6
MluCI	AATT	3 cut(s)	60, 209, 258
MlyI	GAGTC	1 cut(s)	49
MmeI	TCCRAC	1 cut(s)	20
MnlI	CCTC	9 cut(s)	22, 144, 144, 236, 297, 348, 361, 403, 420
Mph1103I	ATGCAT	1 cut(s)	455
MroNI	GCCGGC	1 cut(s)	27
MroXI	GAANNNNTTC	1 cut(s)	269
MseI	TTAA	2 cut(s)	50, 318
MspA1I	CMGCKG	1 cut(s)	68
MspI	CCGG	3 cut(s)	28, 220, 308
MwoI	GCNNNNNNNGC	2 cut(s)	175, 450
NaeI	GCCGGC	1 cut(s)	29
NdeII	GATC	3 cut(s)	19, 89, 101
NgoMIV	GCCGGC	1 cut(s)	27
NlaIII	CATG	2 cut(s)	453, 476
NlaIV	GGNNCC	2 cut(s)	224, 390
NmeAIII	GCCGAG	1 cut(s)	204
NsiI	ATGCAT	1 cut(s)	455
PcsI	WCGNNNNNNNCGW	1 cut(s)	28
PdiI	GCCGGC	1 cut(s)	29
PdmI	GAANNNNTTC	1 cut(s)	269
PfeI	GAWTC	3 cut(s)	43, 158, 331
PflMI	CCANNNNNTGG	1 cut(s)	415
PinAI	ACCGGT	1 cut(s)	307
PkrI	GCNGC	3 cut(s)	67, 119, 122
Ple19I	CGATCG	1 cut(s)	22
PleI	GAGTC	1 cut(s)	49
PpsI	GAGTC	1 cut(s)	49
PspN4I	GGNNCC	2 cut(s)	224, 390
PvuI	CGATCG	1 cut(s)	22
PvuII	CAGCTG	1 cut(s)	68
SaqAI	TTAA	2 cut(s)	50, 318
SatI	GCNGC	3 cut(s)	66, 118, 121
Sau3AI	GATC	3 cut(s)	19, 89, 101
SchI	GAGTC	1 cut(s)	49
SetI	ASST	7 cut(s)	14, 70, 87, 155, 187, 228, 417
SfaNI	GCATC	2 cut(s)	14, 246
SmlI	CTYRAG	1 cut(s)	288
SmoI	CTYRAG	1 cut(s)	288
Sse9I	AATT	3 cut(s)	60, 209, 258
SsiI	CCGC	2 cut(s)	117, 142
SspMI	CTAG	1 cut(s)	396
TaaI	ACNGT	1 cut(s)	388
TaiI	ACGT	1 cut(s)	417
TaqI	TCGA	3 cut(s)	8, 22, 100
TasI	AATT	3 cut(s)	60, 209, 258
TauI	GCSGC	1 cut(s)	120
TfiI	GAWTC	3 cut(s)	43, 158, 331
Tru1I	TTAA	2 cut(s)	50, 318
Tru9I	TTAA	2 cut(s)	50, 318
TscAI	CASTG	1 cut(s)	235
TseI	GCWGC	2 cut(s)	65, 120
TspDTI	ATGAA	5 cut(s)	17, 125, 150, 188, 215
TspRI	CASTG	1 cut(s)	235
Van91I	CCANNNNNTGG	1 cut(s)	415
XmiI	GTMKAC	1 cut(s)	383
XmnI	GAANNNNTTC	1 cut(s)	269
XspI	CTAG	1 cut(s)	396
Zsp2I	ATGCAT	1 cut(s)	455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.