Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008753.1

Orthogroup ID

OG0002408

Physical Location & Seq

Genomic Coordinates Forward (+)

2420 .. 4114

Gene Structure 1695 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008753.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

atgccttccatcgccgaccgcagcgtcgaactcgaatccaacgccgtcgtatcagccggagtttctactcctccgaaactgaggctgagatccaattcgtcgccgatgaagctgagtccggtgaaatgcaagcgcgtcggaatttcttccgtcgcgaaattacgcagagttgtggtcgaatcggagaggagcgtggaggaggtagtcggatccggcggtgatttgactcctcagaagcggaagttgaggaccgattcgtcgtcgctgatgaagccgagaccggtttcgtcgccgatgaagtgtaaatcggctcgccggaacctctgtgcttgcagcagcactcctgcaaatggaattgagaagtattttacaaaccacctgttgtttttgcagaaaaagcctcaagccttttgcaaaccaccggttgttgctatgccgaattggaatcccagaggcaagccttgtttaaacaaactgggattaaattttgggagaaaatgtgtttgttttgtttctaaattagcaaattgtgttgaacttgtacataaggagcagatgaggatagtgaaggaggcattgcacttgtctacggttccctctacagttgcgtgccgcgacgtggagcagaagagggttttgaagttctgcaagtcatgcatagagcaagagaaggccgggagtttatatgtatgcgagtgtcctgggaccggaaagtccttgtccatggagaaagtgaaacagcttttggtgaattgggcaggagagggtggatttcaggaaccggatgtgttggaattgaactgtacatcgctaacaaaaacttttgatattttaaccaagatacttggtaaataccaacctcaaaagaaagctaatggcactacctccctgcaacttcttcagaaattatattctcaaaagcctcagtcagacgggactaagatgatgttgataatagttgatgagttggattacttaatgttaccaaagcaaggatggaggttaatttctaatccatcatcttgtggcgacccggagaccggatttccacagcgcctcctccccaaggaaccctacacccgcgacacttggagtaagtgttttgggcctagaattcgtcaaagagacaaggcctttaggttggaaagcaagaaatctatatgcccgaaattcttgggcttgtatagtgggcttggctcgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0022402 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044786 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA_22 Cdc6_C

Protein Analysis

400

Amino Acids

44.46

Weight (kDa)

9.68

Isoelectric Point (pI)

52.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002408)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0117421 RchiOBHm_Chr2g0147571
rosa_laevigata	RLG00000009715 RLG00000036789
rosa_multiflora	Rmu_sc0005551.1_g000001 Rmu_sc0005551.1_g000002 Rmu_sc0006255.1_g000001 Rmu_sc0006255.1_g000006 Rmu_sc0006255.1_g000008 Rmu_sc0006368.1_g000001 Rmu_sc0008753.1_g000001 Rmu_sc0010335.1_g000001 Rmu_sc0010420.1_g000002 Rmu_sc0013459.1_g000003 Rmu_sc0029520.1_g000001 Rmu_sc0031364.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029450 Rroxscaffold_1G00029500 Rroxscaffold_1G00029570 Rroxscaffold_1G00029580 Rroxscaffold_1G00029590 Rroxscaffold_5G00379910 Rroxscaffold_7G00209950
rosa_rugosa	Rorug01G0060000 Rorug03G0369200.1 Rorug05G0426400 Rorug05G0426500 Rorug05G0426600
rosa_samantha	Rh1AG147300 Rh1BG061700 Rh1CG138600 Rh2BG280100 Rh2BG537700 Rh2CG258400 Rh2CG272200 Rh2DG275000 Rh2DG290600 Rh2DG294200 Rh2DG294400 Rh5BG473700 Rh7AG238100 Rh7CG254700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	3 cut(s)	23, 256, 712
AccI	GTMKAC	1 cut(s)	587
AccII	CGCG	4 cut(s)	135, 155, 615, 1083
AciI	CCGC	5 cut(s)	19, 216, 238, 613, 1081
AclWI	GGATC	3 cut(s)	84, 204, 217
AcsI	RAATTY	4 cut(s)	141, 484, 1113, 1169
AcuI	CTGAAG	1 cut(s)	884
AfaI	GTAC	2 cut(s)	543, 805
AfiI	CCNNNNNNNGG	6 cut(s)	350, 619, 707, 992, 1040, 1066
AgeI	ACCGGT	2 cut(s)	280, 421
AgsI	TTSAA	3 cut(s)	536, 640, 799
AjiI	CACGTC	1 cut(s)	619
AjnI	CCWGG	1 cut(s)	700
AjuI	GAANNNNNNNTTGG	2 cut(s)	728, 760
AluBI	AGCT	3 cut(s)	112, 742, 872
AluI	AGCT	3 cut(s)	112, 742, 872
Alw26I	GTCTC	3 cut(s)	271, 1031, 1119
AlwI	GGATC	3 cut(s)	84, 204, 217
AoxI	GGCC	3 cut(s)	672, 1106, 1131
ApeKI	GCWGC	3 cut(s)	21, 333, 336
ApoI	RAATTY	4 cut(s)	141, 484, 1113, 1169
AsiGI	ACCGGT	2 cut(s)	280, 421
Asp700I	GAANNNNTTC	1 cut(s)	145
AspLEI	GCGC	2 cut(s)	135, 1056
AspS9I	GGNCC	3 cut(s)	249, 705, 1106
AsuC2I	CCSGG	2 cut(s)	676, 1034
AsuHPI	GGTGA	3 cut(s)	133, 230, 760
AvaII	GGWCC	2 cut(s)	249, 705
BamHI	GGATCC	1 cut(s)	209
BbvI	GCAGC	3 cut(s)	33, 345, 348
BccI	CCATC	3 cut(s)	17, 990, 1024
BceAI	ACGGC	1 cut(s)	29
BcgI	CGANNNNNNTGC	2 cut(s)	118, 152
BciT130I	CCWGG	1 cut(s)	702
BcnI	CCSGG	2 cut(s)	676, 1034
BcoDI	GTCTC	3 cut(s)	271, 1031, 1119
BfaI	CTAG	1 cut(s)	1110
BfmI	CTRYAG	1 cut(s)	600
BfoI	RGCGCY	1 cut(s)	1057
BisI	GCNGC	4 cut(s)	22, 334, 337, 613
BlsI	GCNGC	4 cut(s)	23, 335, 338, 614
Bme1390I	CCNGG	3 cut(s)	676, 702, 1034
Bme18I	GGWCC	2 cut(s)	249, 705
BmgBI	CACGTC	1 cut(s)	619
BmgT120I	GGNCC	3 cut(s)	249, 705, 1106
BmiI	GGNNCC	6 cut(s)	211, 320, 594, 706, 780, 1071
BmrFI	CCNGG	3 cut(s)	676, 702, 1034
BmrI	ACTGGG	1 cut(s)	485
BmuI	ACTGGG	1 cut(s)	485
BpuEI	CTTGAG	1 cut(s)	387
BpuMI	CCSGG	2 cut(s)	676, 1034
BsaI	GGTCTC	2 cut(s)	271, 1031
BsaJI	CCNNGG	3 cut(s)	701, 723, 1065
BsaWI	WCCGGW	6 cut(s)	118, 280, 421, 707, 781, 1040
BsaXI	ACNNNNNCTCC	6 cut(s)	484, 514, 1041, 1071, 1084, 1114
Bsc4I	CCNNNNNNNGG	6 cut(s)	350, 619, 707, 992, 1040, 1066
Bse118I	RCCGGY	2 cut(s)	280, 421
Bse1I	ACTGG	1 cut(s)	480
Bse3DI	GCAATG	1 cut(s)	575
BseBI	CCWGG	1 cut(s)	702
BseDI	CCNNGG	3 cut(s)	701, 723, 1065
BseGI	GGATG	2 cut(s)	790, 1001
BseLI	CCNNNNNNNGG	6 cut(s)	350, 619, 707, 992, 1040, 1066
BseMI	GCAATG	1 cut(s)	575
BseMII	CTCAG	5 cut(s)	71, 77, 104, 245, 938
BseNI	ACTGG	1 cut(s)	480
BseRI	GAGGAG	5 cut(s)	60, 202, 212, 219, 1049
BseXI	GCAGC	3 cut(s)	33, 345, 348
Bsh1236I	CGCG	4 cut(s)	135, 155, 615, 1083
Bsh1285I	CGRYCG	1 cut(s)	19
BshFI	GGCC	3 cut(s)	674, 1108, 1133
BshTI	ACCGGT	2 cut(s)	280, 421
BsiEI	CGRYCG	1 cut(s)	19
BslFI	GGGAC	2 cut(s)	718, 949
BslI	CCNNNNNNNGG	6 cut(s)	350, 619, 707, 992, 1040, 1066
BsmAI	GTCTC	3 cut(s)	271, 1031, 1119
BsmFI	GGGAC	2 cut(s)	718, 949
BsnI	GGCC	3 cut(s)	674, 1108, 1133
Bso31I	GGTCTC	2 cut(s)	271, 1031
Bsp1407I	TGTACA	2 cut(s)	541, 803
Bsp143I	GATC	2 cut(s)	89, 209
Bsp19I	CCATGG	1 cut(s)	723
Bsp68I	TCGCGA	1 cut(s)	155
BspACI	CCGC	5 cut(s)	19, 216, 238, 613, 1081
BspANI	GGCC	3 cut(s)	674, 1108, 1133
BspCNI	CTCAG	5 cut(s)	72, 78, 105, 244, 937
BspFNI	CGCG	4 cut(s)	135, 155, 615, 1083
BspLI	GGNNCC	6 cut(s)	211, 320, 594, 706, 780, 1071
BspPI	GGATC	3 cut(s)	84, 204, 217
BspTNI	GGTCTC	2 cut(s)	271, 1031
BsrDI	GCAATG	1 cut(s)	575
BsrFI	RCCGGY	2 cut(s)	280, 421
BsrGI	TGTACA	2 cut(s)	541, 803
BsrI	ACTGG	1 cut(s)	480
BssAI	RCCGGY	2 cut(s)	280, 421
BssECI	CCNNGG	3 cut(s)	701, 723, 1065
BssMI	GATC	2 cut(s)	89, 209
BssT1I	CCWWGG	2 cut(s)	723, 1065
Bst2UI	CCWGG	1 cut(s)	702
Bst4CI	ACNGT	3 cut(s)	592, 604, 803
Bst6I	CTCTTC	1 cut(s)	623
BstAPI	GCANNNNNTGC	1 cut(s)	654
BstAUI	TGTACA	2 cut(s)	541, 803
BstC8I	GCNNGC	5 cut(s)	131, 313, 331, 458, 610
BstDEI	CTNAG	6 cut(s)	80, 86, 113, 231, 924, 939
BstDSI	CCRYGG	1 cut(s)	723
BstENI	CCTNNNNNAGG	1 cut(s)	1064
BstF5I	GGATG	2 cut(s)	790, 1001
BstFNI	CGCG	4 cut(s)	135, 155, 615, 1083
BstH2I	RGCGCY	1 cut(s)	1057
BstHHI	GCGC	2 cut(s)	135, 1056
BstKTI	GATC	2 cut(s)	92, 212
BstMAI	GTCTC	3 cut(s)	271, 1031, 1119
BstMBI	GATC	2 cut(s)	89, 209
BstMCI	CGRYCG	1 cut(s)	19
BstMWI	GCNNNNNNNGC	4 cut(s)	109, 271, 397, 654
BstNI	CCWGG	1 cut(s)	702
BstSCI	CCNGG	3 cut(s)	674, 700, 1032
BstSFI	CTRYAG	1 cut(s)	600
BstUI	CGCG	4 cut(s)	135, 155, 615, 1083
BstV1I	GCAGC	3 cut(s)	33, 345, 348
BstX2I	RGATCY	2 cut(s)	89, 209
BstYI	RGATCY	2 cut(s)	89, 209
BsuRI	GGCC	3 cut(s)	674, 1108, 1133
BtgI	CCRYGG	1 cut(s)	723
BtgZI	GCGATG	1 cut(s)	792
BtrI	CACGTC	1 cut(s)	619
BtsCI	GGATG	2 cut(s)	790, 1001
BtuMI	TCGCGA	1 cut(s)	155
Cac8I	GCNNGC	5 cut(s)	131, 313, 331, 458, 610
CfoI	GCGC	2 cut(s)	135, 1056
Cfr10I	RCCGGY	2 cut(s)	280, 421
Cfr13I	GGNCC	3 cut(s)	249, 705, 1106
CseI	GACGC	2 cut(s)	13, 124
Csp6I	GTAC	2 cut(s)	542, 804
CspAI	ACCGGT	2 cut(s)	280, 421
CviAII	CATG	2 cut(s)	654, 724
CviQI	GTAC	2 cut(s)	542, 804
DdeI	CTNAG	6 cut(s)	80, 86, 113, 231, 924, 939
DpnI	GATC	2 cut(s)	91, 211
DpnII	GATC	2 cut(s)	89, 209
DraI	TTTAAA	1 cut(s)	468
DrdI	GACNNNNNNGTC	3 cut(s)	23, 256, 712
DseDI	GACNNNNNNGTC	3 cut(s)	23, 256, 712
Eam1104I	CTCTTC	1 cut(s)	623
EarI	CTCTTC	1 cut(s)	623
Eco130I	CCWWGG	2 cut(s)	723, 1065
Eco147I	AGGCCT	1 cut(s)	1133
Eco31I	GGTCTC	2 cut(s)	271, 1031
Eco47I	GGWCC	2 cut(s)	249, 705
Eco57I	CTGAAG	1 cut(s)	884
EcoNI	CCTNNNNNAGG	1 cut(s)	1064
EcoRI	GAATTC	1 cut(s)	1113
EcoRII	CCWGG	1 cut(s)	700
EcoT14I	CCWWGG	2 cut(s)	723, 1065
EcoT22I	ATGCAT	1 cut(s)	659
ErhI	CCWWGG	2 cut(s)	723, 1065
FaeI	CATG	2 cut(s)	657, 727
FaqI	GGGAC	2 cut(s)	718, 949
FatI	CATG	2 cut(s)	653, 723
FauI	CCCGC	1 cut(s)	1088
FblI	GTMKAC	1 cut(s)	587
Fnu4HI	GCNGC	4 cut(s)	22, 334, 337, 613
FokI	GGATG	2 cut(s)	797, 1008
Fsp4HI	GCNGC	4 cut(s)	22, 334, 337, 613
FspBI	CTAG	1 cut(s)	1110
GlaI	GCGC	2 cut(s)	134, 1055
GluI	GCNGC	4 cut(s)	22, 334, 337, 613
HaeII	RGCGCY	1 cut(s)	1057
HaeIII	GGCC	3 cut(s)	674, 1108, 1133
HgaI	GACGC	2 cut(s)	13, 124
HhaI	GCGC	2 cut(s)	135, 1056
Hin1II	CATG	2 cut(s)	657, 727
Hin6I	GCGC	2 cut(s)	133, 1054
HinP1I	GCGC	2 cut(s)	133, 1054
HinfI	GANTC	6 cut(s)	35, 115, 179, 226, 254, 445
HphI	GGTGA	3 cut(s)	133, 230, 760
Hpy166II	GTNNAC	1 cut(s)	588
Hpy188I	TCNGA	7 cut(s)	75, 140, 184, 209, 234, 903, 931
Hpy188III	TCNNGA	2 cut(s)	154, 776
Hpy8I	GTNNAC	1 cut(s)	588
Hpy99I	CGWCG	9 cut(s)	29, 50, 103, 140, 155, 262, 265, 292, 620
HpyAV	CCTTC	3 cut(s)	15, 562, 664
HpyCH4III	ACNGT	3 cut(s)	592, 604, 803
HpyCH4IV	ACGT	1 cut(s)	618
HpyCH4V	TGCA	9 cut(s)	129, 333, 347, 391, 414, 580, 648, 657, 892
HpyF10VI	GCNNNNNNNGC	4 cut(s)	109, 271, 397, 654
HpyF3I	CTNAG	6 cut(s)	80, 86, 113, 231, 924, 939
HpySE526I	ACGT	1 cut(s)	618
Hsp92II	CATG	2 cut(s)	657, 727
HspAI	GCGC	2 cut(s)	133, 1054
Kzo9I	GATC	2 cut(s)	89, 209
LmnI	GCTCC	3 cut(s)	189, 550, 622
Lsp1109I	GCAGC	3 cut(s)	33, 345, 348
MaeI	CTAG	1 cut(s)	1110
MaeII	ACGT	1 cut(s)	618
MaeIII	GTNAC	1 cut(s)	981
MalI	GATC	2 cut(s)	91, 211
MboI	GATC	2 cut(s)	89, 209
MboII	GAAGA	3 cut(s)	138, 640, 890
MflI	RGATCY	2 cut(s)	89, 209
MlyI	GAGTC	2 cut(s)	124, 220
MmeI	TCCRAC	6 cut(s)	63, 118, 187, 771, 948, 1122
Mph1103I	ATGCAT	1 cut(s)	659
MroXI	GAANNNNTTC	1 cut(s)	145
MseI	TTAA	5 cut(s)	467, 482, 833, 977, 1004
MspR9I	CCNGG	3 cut(s)	676, 702, 1034
MssI	GTTTAAAC	1 cut(s)	468
MvaI	CCWGG	1 cut(s)	702
MvnI	CGCG	4 cut(s)	135, 155, 615, 1083
MwoI	GCNNNNNNNGC	4 cut(s)	109, 271, 397, 654
NciI	CCSGG	2 cut(s)	676, 1034
NcoI	CCATGG	1 cut(s)	723
NdeII	GATC	2 cut(s)	89, 209
NlaIII	CATG	2 cut(s)	657, 727
NlaIV	GGNNCC	6 cut(s)	211, 320, 594, 706, 780, 1071
NmeAIII	GCCGAG	1 cut(s)	300
NruI	TCGCGA	1 cut(s)	155
NsiI	ATGCAT	1 cut(s)	659
PceI	AGGCCT	1 cut(s)	1133
PdmI	GAANNNNTTC	1 cut(s)	145
PfeI	GAWTC	4 cut(s)	35, 179, 254, 445
PinAI	ACCGGT	2 cut(s)	280, 421
PkrI	GCNGC	4 cut(s)	23, 335, 338, 614
PleI	GAGTC	2 cut(s)	123, 220
PmeI	GTTTAAAC	1 cut(s)	468
PpsI	GAGTC	2 cut(s)	123, 220
Psp6I	CCWGG	1 cut(s)	700
PspGI	CCWGG	1 cut(s)	700
PspN4I	GGNNCC	6 cut(s)	211, 320, 594, 706, 780, 1071
PspPI	GGNCC	3 cut(s)	249, 705, 1106
PsuI	RGATCY	2 cut(s)	89, 209
RruI	TCGCGA	1 cut(s)	155
RsaI	GTAC	2 cut(s)	543, 805
RsaNI	GTAC	2 cut(s)	542, 804
SaqAI	TTAA	5 cut(s)	467, 482, 833, 977, 1004
SatI	GCNGC	4 cut(s)	22, 334, 337, 613
Sau3AI	GATC	2 cut(s)	89, 209
Sau96I	GGNCC	3 cut(s)	249, 705, 1106
SchI	GAGTC	2 cut(s)	124, 220
ScrFI	CCNGG	3 cut(s)	676, 702, 1034
SfcI	CTRYAG	1 cut(s)	600
SinI	GGWCC	2 cut(s)	249, 705
SmlI	CTYRAG	1 cut(s)	402
SmoI	CTYRAG	1 cut(s)	402
SseBI	AGGCCT	1 cut(s)	1133
SsiI	CCGC	5 cut(s)	19, 216, 238, 613, 1081
SspMI	CTAG	1 cut(s)	1110
StuI	AGGCCT	1 cut(s)	1133
StyD4I	CCNGG	3 cut(s)	674, 700, 1032
StyI	CCWWGG	2 cut(s)	723, 1065
TaaI	ACNGT	3 cut(s)	592, 604, 803
TaiI	ACGT	1 cut(s)	621
TaqI	TCGA	3 cut(s)	27, 33, 177
TaqII	GACCGA	1 cut(s)	266
TatI	WGTACW	2 cut(s)	541, 803
TauI	GCSGC	1 cut(s)	615
TfiI	GAWTC	4 cut(s)	35, 179, 254, 445
Tru1I	TTAA	5 cut(s)	467, 482, 833, 977, 1004
Tru9I	TTAA	5 cut(s)	467, 482, 833, 977, 1004
TseI	GCWGC	3 cut(s)	21, 333, 336
TspDTI	ATGAA	3 cut(s)	122, 284, 311
TspGWI	ACGGA	1 cut(s)	139
VpaK11BI	GGWCC	2 cut(s)	249, 705
XagI	CCTNNNNNAGG	1 cut(s)	1064
XapI	RAATTY	4 cut(s)	141, 484, 1113, 1169
XcmI	CCANNNNNNNNNTGG	1 cut(s)	993
XmiI	GTMKAC	1 cut(s)	587
XmnI	GAANNNNTTC	1 cut(s)	145
XspI	CTAG	1 cut(s)	1110
Zsp2I	ATGCAT	1 cut(s)	659

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.