Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001676

Physical Location & Seq

Genomic Coordinates Forward (+)

54737185 .. 54739884

Gene Structure 2700 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030077

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGCTGCTAACAACGTTCCAGTGGGTTTGGATAAGGAACAGAGGAGGGAGATGCAATTGAAAATCAGAGAAAGAAAGATAAGAAGAAGCTTCAAGTACAGAAATCAAAGAAGATGGGTTTCAAATGACCGTTCTTATGATGAAAGAGAGACTGACAAGAGGAATGGTGTGAAGGCAAGGAACAAGTACCGTCCCCCGATGTTGCTGAAGGACATCAATTTAAAAAATGCTTCTTTGCTGGCAGACTTGGCTGGTGCAAGGGTTATTACTGAAGATGATCTTGATTCGACAACCCTTGGAAATGCAATTGAAGAGATGTTAGGTACGTCCATTCTGTTGCTATGTTGCCTGATAAGAGATTGCTTGCTTTACCTTAATGTTTTAACACTTCTTACTGTAAAATTGTCTCATAATCTAGAGGTACCTCCAAGGGGAAGGACACTGCAATCAGAGACCAAGCTTCAGTGCTGTGAACCTGTAATGATGAAATACTTGGGATATTATCCTGCATTGACACCTGATGTGGTCAAGAAGCGGGTAGCACGAGCAAGTAAGGCACAGAAAACATGGGCAAAGAGTAGCTTCAAGCAAAGAAACCTGTTTCTTTGGATTATTCTCAAGTATATAATAGAACACCAAGGGGCTACCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004029 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0008150 GO:0008152 GO:0012505 GO:0016491 GO:0016620 GO:0016903 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aldedh

Protein Analysis

218

Amino Acids

25.18

Weight (kDa)

9.9

Isoelectric Point (pI)

48.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001676)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G66658 AT3G66658
fragaria_vesca	FvH4_4g19600
malus_domestica	MD13G1155400.v1.1 MD16G1154800.v1.1
prunus_persica	Prupe.1G118500_v2.0.a1 Prupe.1G118500_v2.0.a1
pyrus_communis	pycom13g13230 pycom16g13120
rosa_chinensis	RchiOBHm_Chr1g0319361 RchiOBHm_Chr3g0485871 RchiOBHm_Chr4g0424861
rosa_laevigata	RLG00000007414 RLG00000030077
rosa_multiflora	Rmu_sc0005870.1_g000002 Rmu_sc0006754.1_g000006 Rmu_sc0014506.1_g000007 Rmu_sc0016377.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225740 Rroxscaffold_4G00328540 Rroxscaffold_5G00367080
rosa_rugosa	Rorug01G0166300 Rorug02G0293100 Rorug02G0554900 Rorug04G0192400 Rorug04G0199800 Rorug04G0346500
rosa_samantha	Rh1BG349600 Rh1CG003900 Rh1CG038200 Rh1DG031700 Rh1DG139100 Rh1DG263900 Rh2AG629500 Rh2CG592700 Rh2DG371100 Rh2DG650900 Rh2DG656600 Rh3AG263700 Rh3CG371400 Rh4AG036400 Rh4AG043400 Rh4AG077000 Rh4AG257500 Rh4CG273800 Rh4DG258600 Rh7BG306900
rosa_wichuraiana	Rw1G003140 Rw4G022220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	421
AccB1I	GGYRCC	1 cut(s)	421
AciI	CCGC	1 cut(s)	535
AclI	AACGTT	1 cut(s)	15
AcuI	CTGAAG	3 cut(s)	227, 291, 446
AfaI	GTAC	4 cut(s)	98, 188, 325, 423
AfiI	CCNNNNNNNGG	1 cut(s)	431
AgsI	TTSAA	5 cut(s)	61, 94, 123, 311, 586
AluBI	AGCT	3 cut(s)	90, 460, 582
AluI	AGCT	3 cut(s)	90, 460, 582
Alw26I	GTCTC	3 cut(s)	143, 411, 446
ApeKI	GCWGC	1 cut(s)	5
Asp718I	GGTACC	1 cut(s)	421
BanI	GGYRCC	1 cut(s)	421
BauI	CACGAG	1 cut(s)	543
BccI	CCATC	1 cut(s)	108
BcoDI	GTCTC	3 cut(s)	143, 411, 446
BfaI	CTAG	1 cut(s)	416
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
BmiI	GGNNCC	1 cut(s)	423
BmsI	GCATC	1 cut(s)	42
BpuEI	CTTGAG	1 cut(s)	602
BsaI	GGTCTC	1 cut(s)	446
BsaJI	CCNNGG	3 cut(s)	295, 428, 637
Bsc4I	CCNNNNNNNGG	1 cut(s)	431
Bse1I	ACTGG	1 cut(s)	20
BseDI	CCNNGG	3 cut(s)	295, 428, 637
BseLI	CCNNNNNNNGG	1 cut(s)	431
BseNI	ACTGG	1 cut(s)	20
BseRI	GAGGAG	1 cut(s)	58
BshNI	GGYRCC	1 cut(s)	421
BslFI	GGGAC	1 cut(s)	177
BslI	CCNNNNNNNGG	1 cut(s)	431
BsmAI	GTCTC	3 cut(s)	143, 411, 446
BsmFI	GGGAC	1 cut(s)	177
Bso31I	GGTCTC	1 cut(s)	446
Bsp143I	GATC	1 cut(s)	277
BspACI	CCGC	1 cut(s)	535
BspLI	GGNNCC	1 cut(s)	423
BspT107I	GGYRCC	1 cut(s)	421
BspTNI	GGTCTC	1 cut(s)	446
BsrI	ACTGG	1 cut(s)	20
BssECI	CCNNGG	3 cut(s)	295, 428, 637
BssMI	GATC	1 cut(s)	277
BssSI	CACGAG	1 cut(s)	543
BssT1I	CCWWGG	3 cut(s)	295, 428, 637
Bst2BI	CACGAG	1 cut(s)	543
Bst4CI	ACNGT	3 cut(s)	131, 191, 397
Bst6I	CTCTTC	1 cut(s)	306
BstC8I	GCNNGC	2 cut(s)	240, 365
BstKTI	GATC	1 cut(s)	280
BstMAI	GTCTC	3 cut(s)	143, 411, 446
BstMBI	GATC	1 cut(s)	277
BstMWI	GCNNNNNNNGC	2 cut(s)	248, 554
BtsI	GCAGTG	1 cut(s)	440
BtsIMutI	CAGTG	3 cut(s)	27, 440, 470
Cac8I	GCNNGC	2 cut(s)	240, 365
Csp6I	GTAC	4 cut(s)	97, 187, 324, 422
CviAII	CATG	1 cut(s)	567
CviJI	RGCY	6 cut(s)	5, 90, 251, 460, 582, 644
CviKI_1	RGCY	6 cut(s)	5, 90, 251, 460, 582, 644
CviQI	GTAC	4 cut(s)	97, 187, 324, 422
DpnI	GATC	1 cut(s)	279
DpnII	GATC	1 cut(s)	277
DraI	TTTAAA	1 cut(s)	222
Eam1104I	CTCTTC	1 cut(s)	306
EarI	CTCTTC	1 cut(s)	306
Eco130I	CCWWGG	3 cut(s)	295, 428, 637
Eco31I	GGTCTC	1 cut(s)	446
Eco57I	CTGAAG	3 cut(s)	227, 291, 446
EcoT14I	CCWWGG	3 cut(s)	295, 428, 637
ErhI	CCWWGG	3 cut(s)	295, 428, 637
FaeI	CATG	1 cut(s)	570
FaiI	YATR	6 cut(s)	138, 343, 411, 568, 624, 626
FalI	AAGNNNNNCTT	4 cut(s)	264, 296, 566, 598
FaqI	GGGAC	1 cut(s)	177
FatI	CATG	1 cut(s)	566
FauI	CCCGC	1 cut(s)	528
Fnu4HI	GCNGC	1 cut(s)	6
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	1 cut(s)	416
GluI	GCNGC	1 cut(s)	6
Hin1II	CATG	1 cut(s)	570
HindIII	AAGCTT	2 cut(s)	88, 458
HinfI	GANTC	1 cut(s)	284
Hpy166II	GTNNAC	1 cut(s)	473
Hpy188I	TCNGA	2 cut(s)	68, 451
Hpy188III	TCNNGA	3 cut(s)	281, 416, 529
Hpy8I	GTNNAC	1 cut(s)	473
HpyAV	CCTTC	3 cut(s)	166, 202, 429
HpyCH4III	ACNGT	3 cut(s)	131, 191, 397
HpyCH4IV	ACGT	2 cut(s)	15, 326
HpyCH4V	TGCA	5 cut(s)	55, 257, 305, 445, 509
HpyF10VI	GCNNNNNNNGC	2 cut(s)	248, 554
HpySE526I	ACGT	2 cut(s)	15, 326
Hsp92II	CATG	1 cut(s)	570
KpnI	GGTACC	1 cut(s)	425
Kzo9I	GATC	1 cut(s)	277
LpnPI	CCDG	8 cut(s)	33, 224, 237, 362, 489, 519, 531, 611
LweI	GCATC	1 cut(s)	42
MaeI	CTAG	1 cut(s)	416
MaeII	ACGT	2 cut(s)	15, 326
MalI	GATC	1 cut(s)	279
MboI	GATC	1 cut(s)	277
MboII	GAAGA	4 cut(s)	96, 123, 284, 323
MfeI	CAATTG	2 cut(s)	56, 306
MluCI	AATT	4 cut(s)	56, 217, 306, 401
MnlI	CCTC	5 cut(s)	36, 39, 153, 412, 435
MseI	TTAA	3 cut(s)	221, 375, 383
MunI	CAATTG	2 cut(s)	56, 306
MwoI	GCNNNNNNNGC	2 cut(s)	248, 554
NdeII	GATC	1 cut(s)	277
NlaIII	CATG	1 cut(s)	570
NlaIV	GGNNCC	1 cut(s)	423
PfeI	GAWTC	1 cut(s)	284
PkrI	GCNGC	1 cut(s)	7
Psp1406I	AACGTT	1 cut(s)	15
PspN4I	GGNNCC	1 cut(s)	423
RsaI	GTAC	4 cut(s)	98, 188, 325, 423
RsaNI	GTAC	4 cut(s)	97, 187, 324, 422
SaqAI	TTAA	3 cut(s)	221, 375, 383
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	1 cut(s)	277
SfaNI	GCATC	1 cut(s)	42
SmlI	CTYRAG	1 cut(s)	617
SmoI	CTYRAG	1 cut(s)	617
Sse9I	AATT	4 cut(s)	56, 217, 306, 401
SsiI	CCGC	1 cut(s)	535
SspMI	CTAG	1 cut(s)	416
StyI	CCWWGG	3 cut(s)	295, 428, 637
TaaI	ACNGT	3 cut(s)	131, 191, 397
TaiI	ACGT	2 cut(s)	18, 329
TaqI	TCGA	1 cut(s)	287
TasI	AATT	4 cut(s)	56, 217, 306, 401
TatI	WGTACW	1 cut(s)	96
TfiI	GAWTC	1 cut(s)	284
Tru1I	TTAA	3 cut(s)	221, 375, 383
Tru9I	TTAA	3 cut(s)	221, 375, 383
TscAI	CASTG	3 cut(s)	27, 447, 470
TseI	GCWGC	1 cut(s)	5
TspDTI	ATGAA	2 cut(s)	156, 500
TspRI	CASTG	3 cut(s)	27, 447, 470
XbaI	TCTAGA	1 cut(s)	415
XspI	CTAG	1 cut(s)	416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.