Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001676

Physical Location & Seq

Genomic Coordinates Forward (+)

76912875 .. 76913303

Gene Structure 429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG592700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGAAAGAAGTTGCTAGAAGGGAGAAGCAAGCTGGTATTGTCCCAGAACCAGATATTGACACTTATATGAAGGCCATTTCAATTGAAGGGTTGAAAAAATCTCTAATGACAGACTATATAATAAAGATCCTTGGGCTGGACATTTGTGCTGAGACAATCACAGGGGACCCAATGCAAAGAGGAATTTCGGGTGGTCAAAAGAAAAGGCTAACAACAGGTTCTGCAAATTCCCCACCTTGCTGCATTCTCATCTTTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

86

Amino Acids

9.4

Weight (kDa)

7.67

Isoelectric Point (pI)

38.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001676)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G66658 AT3G66658
fragaria_vesca	FvH4_4g19600
malus_domestica	MD13G1155400.v1.1 MD16G1154800.v1.1
prunus_persica	Prupe.1G118500_v2.0.a1 Prupe.1G118500_v2.0.a1
pyrus_communis	pycom13g13230 pycom16g13120
rosa_chinensis	RchiOBHm_Chr1g0319361 RchiOBHm_Chr3g0485871 RchiOBHm_Chr4g0424861
rosa_laevigata	RLG00000007414 RLG00000030077
rosa_multiflora	Rmu_sc0005870.1_g000002 Rmu_sc0006754.1_g000006 Rmu_sc0014506.1_g000007 Rmu_sc0016377.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225740 Rroxscaffold_4G00328540 Rroxscaffold_5G00367080
rosa_rugosa	Rorug01G0166300 Rorug02G0293100 Rorug02G0554900 Rorug04G0192400 Rorug04G0199800 Rorug04G0346500
rosa_samantha	Rh1BG349600 Rh1CG003900 Rh1CG038200 Rh1DG031700 Rh1DG139100 Rh1DG263900 Rh2AG629500 Rh2CG592700 Rh2DG371100 Rh2DG650900 Rh2DG656600 Rh3AG263700 Rh3CG371400 Rh4AG036400 Rh4AG043400 Rh4AG077000 Rh4AG257500 Rh4CG273800 Rh4DG258600 Rh7BG306900
rosa_wichuraiana	Rw1G003140 Rw4G022220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	121
AcsI	RAATTY	2 cut(s)	183, 226
AfiI	CCNNNNNNNGG	1 cut(s)	136
AgsI	TTSAA	4 cut(s)	81, 86, 94, 257
AluBI	AGCT	1 cut(s)	32
AluI	AGCT	1 cut(s)	32
Alw26I	GTCTC	1 cut(s)	146
AlwI	GGATC	1 cut(s)	121
AlwNI	CAGNNNCTG	1 cut(s)	221
AoxI	GGCC	1 cut(s)	72
ApeKI	GCWGC	1 cut(s)	240
ApoI	RAATTY	2 cut(s)	183, 226
AspS9I	GGNCC	1 cut(s)	166
AvaII	GGWCC	1 cut(s)	166
BbvI	GCAGC	1 cut(s)	227
BcoDI	GTCTC	1 cut(s)	146
BfaI	CTAG	1 cut(s)	15
BisI	GCNGC	1 cut(s)	241
BlsI	GCNGC	1 cut(s)	242
Bme18I	GGWCC	1 cut(s)	166
BmgT120I	GGNCC	1 cut(s)	166
BmiI	GGNNCC	2 cut(s)	167, 168
BsaJI	CCNNGG	1 cut(s)	130
Bsc4I	CCNNNNNNNGG	1 cut(s)	136
BseDI	CCNNGG	1 cut(s)	130
BseLI	CCNNNNNNNGG	1 cut(s)	136
BseMII	CTCAG	1 cut(s)	141
BseXI	GCAGC	1 cut(s)	227
BshFI	GGCC	1 cut(s)	74
BslFI	GGGAC	2 cut(s)	26, 179
BslI	CCNNNNNNNGG	1 cut(s)	136
BsmAI	GTCTC	1 cut(s)	146
BsmFI	GGGAC	2 cut(s)	26, 179
BsmI	GAATGC	1 cut(s)	243
BsnI	GGCC	1 cut(s)	74
Bsp143I	GATC	1 cut(s)	126
BspANI	GGCC	1 cut(s)	74
BspCNI	CTCAG	1 cut(s)	142
BspLI	GGNNCC	2 cut(s)	167, 168
BspPI	GGATC	1 cut(s)	121
BssECI	CCNNGG	1 cut(s)	130
BssMI	GATC	1 cut(s)	126
BssT1I	CCWWGG	1 cut(s)	130
BstC8I	GCNNGC	1 cut(s)	30
BstDEI	CTNAG	1 cut(s)	150
BstKTI	GATC	1 cut(s)	129
BstMAI	GTCTC	1 cut(s)	146
BstMBI	GATC	1 cut(s)	126
BstV1I	GCAGC	1 cut(s)	227
BstX2I	RGATCY	1 cut(s)	126
BstYI	RGATCY	1 cut(s)	126
BsuRI	GGCC	1 cut(s)	74
Cac8I	GCNNGC	1 cut(s)	30
CaiI	CAGNNNCTG	1 cut(s)	221
Cfr13I	GGNCC	1 cut(s)	166
CviJI	RGCY	4 cut(s)	32, 74, 136, 208
CviKI_1	RGCY	4 cut(s)	32, 74, 136, 208
DdeI	CTNAG	1 cut(s)	150
DpnI	GATC	1 cut(s)	128
DpnII	GATC	1 cut(s)	126
Eco130I	CCWWGG	1 cut(s)	130
Eco47I	GGWCC	1 cut(s)	166
EcoO109I	RGGNCCY	1 cut(s)	166
EcoT14I	CCWWGG	1 cut(s)	130
ErhI	CCWWGG	1 cut(s)	130
FaiI	YATR	4 cut(s)	66, 68, 117, 119
FaqI	GGGAC	2 cut(s)	26, 179
Fnu4HI	GCNGC	1 cut(s)	241
Fsp4HI	GCNGC	1 cut(s)	241
FspBI	CTAG	1 cut(s)	15
GluI	GCNGC	1 cut(s)	241
HaeIII	GGCC	1 cut(s)	74
HpyAV	CCTTC	3 cut(s)	12, 64, 80
HpyCH4V	TGCA	3 cut(s)	175, 224, 243
HpyF3I	CTNAG	1 cut(s)	150
KflI	GGGWCCC	1 cut(s)	166
Kzo9I	GATC	1 cut(s)	126
LpnPI	CCDG	6 cut(s)	18, 57, 63, 122, 147, 201
Lsp1109I	GCAGC	1 cut(s)	227
MaeI	CTAG	1 cut(s)	15
MalI	GATC	1 cut(s)	128
MboI	GATC	1 cut(s)	126
MfeI	CAATTG	1 cut(s)	81
MflI	RGATCY	1 cut(s)	126
MluCI	AATT	3 cut(s)	81, 183, 226
MnlI	CCTC	1 cut(s)	173
MslI	CAYNNNNRTG	1 cut(s)	65
MunI	CAATTG	1 cut(s)	81
Mva1269I	GAATGC	1 cut(s)	243
NdeII	GATC	1 cut(s)	126
NlaIV	GGNNCC	2 cut(s)	167, 168
PctI	GAATGC	1 cut(s)	243
PkrI	GCNGC	1 cut(s)	242
PpuMI	RGGWCCY	1 cut(s)	166
Psp5II	RGGWCCY	1 cut(s)	166
PspN4I	GGNNCC	2 cut(s)	167, 168
PspPI	GGNCC	1 cut(s)	166
PspPPI	RGGWCCY	1 cut(s)	166
PstNI	CAGNNNCTG	1 cut(s)	221
PsuI	RGATCY	1 cut(s)	126
RseI	CAYNNNNRTG	1 cut(s)	65
SatI	GCNGC	1 cut(s)	241
Sau3AI	GATC	1 cut(s)	126
Sau96I	GGNCC	1 cut(s)	166
SetI	ASST	3 cut(s)	34, 220, 238
SinI	GGWCC	1 cut(s)	166
SmiMI	CAYNNNNRTG	1 cut(s)	65
Sse9I	AATT	3 cut(s)	81, 183, 226
SspMI	CTAG	1 cut(s)	15
StyI	CCWWGG	1 cut(s)	130
TasI	AATT	3 cut(s)	81, 183, 226
TseI	GCWGC	1 cut(s)	240
TspDTI	ATGAA	2 cut(s)	17, 83
VpaK11BI	GGWCC	1 cut(s)	166
XapI	RAATTY	2 cut(s)	183, 226
XspI	CTAG	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.