Rw1G003140

Belongs to the aldehyde dehydrogenase family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Reverse (-)
5749814 .. 5752046
2233 bp
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UTR
Exon/CDS
Intron
Rw1G003140.1

Sequence Viewer

Length: 264 bp
ATGGCAGTGTTGGACGATGGGAATCAGAGCCAGGAGAACAGTTTCATATATGGACCTCCAAGGGAAAGGTCAGCGCAATCAGAGACCAAGGTTAAGTGCTATGAACCTGCAATCATGAAATACTTGGGATATTACCCTGCATTGACACCTGATGAGGTCAAGGAGCGGGTAGCACTAGCAACGAAGCCACAAAAATCATGGGCAAATAGTAGCTTCAAGCAAAGACGCCTATTTCTTCGGATTATTCTCAACTTGGAAATCTAA

Protein Analysis

87

Amino Acids

10.04

Weight (kDa)

9.13

Isoelectric Point (pI)

52.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 115
AccBSI CCGCTC 1 cut(s) 166
AciI CCGC 1 cut(s) 166
AcyI GRCGYC 1 cut(s) 226
AgsI TTSAA 1 cut(s) 217
AjnI CCWGG 1 cut(s) 30
AluBI AGCT 1 cut(s) 213
AluI AGCT 1 cut(s) 213
Alw26I GTCTC 1 cut(s) 77
Asp700I GAANNNNTTC 1 cut(s) 41
AspLEI GCGC 1 cut(s) 76
AspS9I GGNCC 1 cut(s) 53
AvaII GGWCC 1 cut(s) 53
BccI CCATC 1 cut(s) 11
BciT130I CCWGG 1 cut(s) 32
BcoDI GTCTC 1 cut(s) 77
BfaI CTAG 1 cut(s) 176
BfuAI ACCTGC 1 cut(s) 115
Bme1390I CCNGG 1 cut(s) 32
Bme18I GGWCC 1 cut(s) 53
BmgT120I GGNCC 1 cut(s) 53
BmrFI CCNGG 1 cut(s) 32
BsaBI GATNNNNATC 1 cut(s) 21
BsaHI GRCGYC 1 cut(s) 226
BsaI GGTCTC 1 cut(s) 77
BsaJI CCNNGG 2 cut(s) 59, 87
Bse8I GATNNNNATC 1 cut(s) 21
BseBI CCWGG 1 cut(s) 32
BseDI CCNNGG 2 cut(s) 59, 87
BseJI GATNNNNATC 1 cut(s) 21
BsmAI GTCTC 1 cut(s) 77
Bso31I GGTCTC 1 cut(s) 77
BspACI CCGC 1 cut(s) 166
BspHI TCATGA 1 cut(s) 114
BspMI ACCTGC 1 cut(s) 115
BspTNI GGTCTC 1 cut(s) 77
BsrBI CCGCTC 1 cut(s) 166
BssECI CCNNGG 2 cut(s) 59, 87
BssNI GRCGYC 1 cut(s) 226
BssT1I CCWWGG 2 cut(s) 59, 87
Bst2UI CCWGG 1 cut(s) 32
Bst4CI ACNGT 1 cut(s) 41
BstACI GRCGYC 1 cut(s) 226
BstHHI GCGC 1 cut(s) 76
BstMAI GTCTC 1 cut(s) 77
BstNI CCWGG 1 cut(s) 32
BstSCI CCNGG 1 cut(s) 30
BtsI GCAGTG 1 cut(s) 12
BtsIMutI CAGTG 1 cut(s) 12
BveI ACCTGC 1 cut(s) 115
CciI TCATGA 1 cut(s) 114
CfoI GCGC 1 cut(s) 76
Cfr13I GGNCC 1 cut(s) 53
CseI GACGC 1 cut(s) 234
CviAII CATG 2 cut(s) 115, 198
CviJI RGCY 3 cut(s) 30, 187, 213
CviKI_1 RGCY 3 cut(s) 30, 187, 213
Eco130I CCWWGG 2 cut(s) 59, 87
Eco31I GGTCTC 1 cut(s) 77
Eco47I GGWCC 1 cut(s) 53
EcoRII CCWGG 1 cut(s) 30
EcoT14I CCWWGG 2 cut(s) 59, 87
ErhI CCWWGG 2 cut(s) 59, 87
FaeI CATG 2 cut(s) 118, 201
FaiI YATR 6 cut(s) 47, 49, 51, 102, 116, 199
FatI CATG 2 cut(s) 114, 197
FauI CCCGC 1 cut(s) 159
FspBI CTAG 1 cut(s) 176
GlaI GCGC 1 cut(s) 75
HgaI GACGC 1 cut(s) 234
HhaI GCGC 1 cut(s) 76
Hin1I GRCGYC 1 cut(s) 226
Hin1II CATG 2 cut(s) 118, 201
Hin6I GCGC 1 cut(s) 74
HinP1I GCGC 1 cut(s) 74
HinfI GANTC 1 cut(s) 22
Hpy188I TCNGA 3 cut(s) 27, 82, 240
Hpy188III TCNNGA 1 cut(s) 115
HpyCH4III ACNGT 1 cut(s) 41
HpyCH4V TGCA 2 cut(s) 110, 140
Hsp92I GRCGYC 1 cut(s) 226
Hsp92II CATG 2 cut(s) 118, 201
HspAI GCGC 1 cut(s) 74
LmnI GCTCC 1 cut(s) 163
LpnPI CCDG 5 cut(s) 17, 44, 120, 150, 162
MaeI CTAG 1 cut(s) 176
MbiI CCGCTC 1 cut(s) 166
MboII GAAGA 1 cut(s) 227
MnlI CCTC 2 cut(s) 66, 148
MroXI GAANNNNTTC 1 cut(s) 41
MseI TTAA 1 cut(s) 93
MspR9I CCNGG 1 cut(s) 32
MvaI CCWGG 1 cut(s) 32
NlaIII CATG 2 cut(s) 118, 201
PagI TCATGA 1 cut(s) 114
PdmI GAANNNNTTC 1 cut(s) 41
PfeI GAWTC 1 cut(s) 22
Psp6I CCWGG 1 cut(s) 30
PspGI CCWGG 1 cut(s) 30
PspPI GGNCC 1 cut(s) 53
SaqAI TTAA 1 cut(s) 93
Sau96I GGNCC 1 cut(s) 53
ScrFI CCNGG 1 cut(s) 32
SetI ASST 7 cut(s) 58, 71, 93, 109, 151, 159, 215
SinI GGWCC 1 cut(s) 53
SsiI CCGC 1 cut(s) 166
SspMI CTAG 1 cut(s) 176
StyD4I CCNGG 1 cut(s) 30
StyI CCWWGG 2 cut(s) 59, 87
TaaI ACNGT 1 cut(s) 41
TfiI GAWTC 1 cut(s) 22
Tru1I TTAA 1 cut(s) 93
Tru9I TTAA 1 cut(s) 93
TscAI CASTG 1 cut(s) 12
TspDTI ATGAA 3 cut(s) 34, 117, 131
TspRI CASTG 1 cut(s) 12
VpaK11BI GGWCC 1 cut(s) 53
XcmI CCANNNNNNNNNTGG 1 cut(s) 195
XmnI GAANNNNTTC 1 cut(s) 41
XspI CTAG 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.