Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001676

Physical Location & Seq

Genomic Coordinates Forward (+)

52790553 .. 52823381

Gene Structure 32829 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG371100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 153 bp

ATGGCTGCTAACACTGTTCCAGTGGGTTTGGACAAGGAACTGGGACCTCCAAGGGGAAGGACACCACAATCAGAGACCACGGTTCAGTGCTATGAACCTGCAACCATGAAATACTTGGGAGATTACCCTGCATTGACACCTGATGAGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004029 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0008150 GO:0008152 GO:0012505 GO:0016491 GO:0016620 GO:0016903 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aldedh

Protein Analysis

50

Amino Acids

5.42

Weight (kDa)

4.44

Isoelectric Point (pI)

41.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001676)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G66658 AT3G66658
fragaria_vesca	FvH4_4g19600
malus_domestica	MD13G1155400.v1.1 MD16G1154800.v1.1
prunus_persica	Prupe.1G118500_v2.0.a1 Prupe.1G118500_v2.0.a1
pyrus_communis	pycom13g13230 pycom16g13120
rosa_chinensis	RchiOBHm_Chr1g0319361 RchiOBHm_Chr3g0485871 RchiOBHm_Chr4g0424861
rosa_laevigata	RLG00000007414 RLG00000030077
rosa_multiflora	Rmu_sc0005870.1_g000002 Rmu_sc0006754.1_g000006 Rmu_sc0014506.1_g000007 Rmu_sc0016377.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225740 Rroxscaffold_4G00328540 Rroxscaffold_5G00367080
rosa_rugosa	Rorug01G0166300 Rorug02G0293100 Rorug02G0554900 Rorug04G0192400 Rorug04G0199800 Rorug04G0346500
rosa_samantha	Rh1BG349600 Rh1CG003900 Rh1CG038200 Rh1DG031700 Rh1DG139100 Rh1DG263900 Rh2AG629500 Rh2CG592700 Rh2DG371100 Rh2DG650900 Rh2DG656600 Rh3AG263700 Rh3CG371400 Rh4AG036400 Rh4AG043400 Rh4AG077000 Rh4AG257500 Rh4CG273800 Rh4DG258600 Rh7BG306900
rosa_wichuraiana	Rw1G003140 Rw4G022220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	106
AfiI	CCNNNNNNNGG	1 cut(s)	53
Alw26I	GTCTC	1 cut(s)	68
ApeKI	GCWGC	1 cut(s)	5
AspS9I	GGNCC	1 cut(s)	44
AvaII	GGWCC	1 cut(s)	44
BcoDI	GTCTC	1 cut(s)	68
BfuAI	ACCTGC	1 cut(s)	106
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme18I	GGWCC	1 cut(s)	44
BmgT120I	GGNCC	1 cut(s)	44
BmiI	GGNNCC	1 cut(s)	45
BmrI	ACTGGG	1 cut(s)	50
BmuI	ACTGGG	1 cut(s)	50
BsaI	GGTCTC	1 cut(s)	68
BsaJI	CCNNGG	2 cut(s)	50, 78
Bsc4I	CCNNNNNNNGG	1 cut(s)	53
Bse1I	ACTGG	2 cut(s)	20, 45
BseDI	CCNNGG	2 cut(s)	50, 78
BseLI	CCNNNNNNNGG	1 cut(s)	53
BseNI	ACTGG	2 cut(s)	20, 45
BslFI	GGGAC	1 cut(s)	57
BslI	CCNNNNNNNGG	1 cut(s)	53
BsmAI	GTCTC	1 cut(s)	68
BsmFI	GGGAC	1 cut(s)	57
Bso31I	GGTCTC	1 cut(s)	68
BspLI	GGNNCC	1 cut(s)	45
BspMI	ACCTGC	1 cut(s)	106
BspTNI	GGTCTC	1 cut(s)	68
BsrI	ACTGG	2 cut(s)	20, 45
BssECI	CCNNGG	2 cut(s)	50, 78
BssT1I	CCWWGG	1 cut(s)	50
Bst4CI	ACNGT	2 cut(s)	16, 82
BstDSI	CCRYGG	1 cut(s)	78
BstMAI	GTCTC	1 cut(s)	68
BtgI	CCRYGG	1 cut(s)	78
BtsIMutI	CAGTG	3 cut(s)	12, 27, 92
BveI	ACCTGC	1 cut(s)	106
Cfr13I	GGNCC	1 cut(s)	44
CviAII	CATG	1 cut(s)	106
CviJI	RGCY	1 cut(s)	5
CviKI_1	RGCY	1 cut(s)	5
Eco130I	CCWWGG	1 cut(s)	50
Eco31I	GGTCTC	1 cut(s)	68
Eco47I	GGWCC	1 cut(s)	44
EcoO109I	RGGNCCY	1 cut(s)	44
EcoT14I	CCWWGG	1 cut(s)	50
ErhI	CCWWGG	1 cut(s)	50
FaeI	CATG	1 cut(s)	109
FaiI	YATR	2 cut(s)	93, 107
FaqI	GGGAC	1 cut(s)	57
FatI	CATG	1 cut(s)	105
Fnu4HI	GCNGC	1 cut(s)	6
Fsp4HI	GCNGC	1 cut(s)	6
GluI	GCNGC	1 cut(s)	6
Hin1II	CATG	1 cut(s)	109
Hpy188I	TCNGA	1 cut(s)	73
HpyAV	CCTTC	1 cut(s)	51
HpyCH4III	ACNGT	2 cut(s)	16, 82
HpyCH4V	TGCA	2 cut(s)	101, 131
Hsp92II	CATG	1 cut(s)	109
LpnPI	CCDG	4 cut(s)	26, 33, 111, 141
MluCI	AATT	1 cut(s)	148
MnlI	CCTC	1 cut(s)	57
NlaIII	CATG	1 cut(s)	109
NlaIV	GGNNCC	1 cut(s)	45
PkrI	GCNGC	1 cut(s)	7
PpuMI	RGGWCCY	1 cut(s)	44
Psp5II	RGGWCCY	1 cut(s)	44
PspN4I	GGNNCC	1 cut(s)	45
PspPI	GGNCC	1 cut(s)	44
PspPPI	RGGWCCY	1 cut(s)	44
SatI	GCNGC	1 cut(s)	6
Sau96I	GGNCC	1 cut(s)	44
SetI	ASST	3 cut(s)	49, 100, 142
SgeI	CNNG	9 cut(s)	32, 46, 53, 63, 91, 110, 118, 127, 140
SinI	GGWCC	1 cut(s)	44
Sse9I	AATT	1 cut(s)	148
StyI	CCWWGG	1 cut(s)	50
TaaI	ACNGT	2 cut(s)	16, 82
TasI	AATT	1 cut(s)	148
TscAI	CASTG	3 cut(s)	19, 27, 92
TseI	GCWGC	1 cut(s)	5
TspDTI	ATGAA	2 cut(s)	108, 122
TspRI	CASTG	3 cut(s)	19, 27, 92
VpaK11BI	GGWCC	1 cut(s)	44
XcmI	CCANNNNNNNNNTGG	1 cut(s)	112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.