Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0001676

Physical Location & Seq

Genomic Coordinates Forward (+)

9028793 .. 9043314

Gene Structure 14522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG043400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGTTGATTGGGAAGAGGCTCCGGTTGCAGGGACCTCCAAGGAGGAGGACACTACAATCAGAGTCCAAGGTTCAGAACTATGAACCTGCAACCATGAAATACTTTGGATATCACCCTGCATTGACACTTGATGAGCAAGCCCATCACAACCATACCCAAAACTCGACCCATCGCCTCTCGGGCATTTCCCCAAGCCCAGACGCCCTCCCAAGACCTCAACATGCTATTGGTCTTGTCATTAACCTCAAACCCGTTGTGCAAAACTGTGTCGTTGAGCAGGTGCTTCGGATCCAACGACCGCGAGATGATGTTATCGTGAGTCTCGAAGAGGTGGAGGTGGTGGGACTTGAAGACAAGATCGAGGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004029 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0008150 GO:0008152 GO:0012505 GO:0016491 GO:0016620 GO:0016903 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aldedh

Protein Analysis

122

Amino Acids

13.8

Weight (kDa)

7.97

Isoelectric Point (pI)

60.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001676)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G66658 AT3G66658
fragaria_vesca	FvH4_4g19600
malus_domestica	MD13G1155400.v1.1 MD16G1154800.v1.1
prunus_persica	Prupe.1G118500_v2.0.a1 Prupe.1G118500_v2.0.a1
pyrus_communis	pycom13g13230 pycom16g13120
rosa_chinensis	RchiOBHm_Chr1g0319361 RchiOBHm_Chr3g0485871 RchiOBHm_Chr4g0424861
rosa_laevigata	RLG00000007414 RLG00000030077
rosa_multiflora	Rmu_sc0005870.1_g000002 Rmu_sc0006754.1_g000006 Rmu_sc0014506.1_g000007 Rmu_sc0016377.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225740 Rroxscaffold_4G00328540 Rroxscaffold_5G00367080
rosa_rugosa	Rorug01G0166300 Rorug02G0293100 Rorug02G0554900 Rorug04G0192400 Rorug04G0199800 Rorug04G0346500
rosa_samantha	Rh1BG349600 Rh1CG003900 Rh1CG038200 Rh1DG031700 Rh1DG139100 Rh1DG263900 Rh2AG629500 Rh2CG592700 Rh2DG371100 Rh2DG650900 Rh2DG656600 Rh3AG263700 Rh3CG371400 Rh4AG036400 Rh4AG043400 Rh4AG077000 Rh4AG257500 Rh4CG273800 Rh4DG258600 Rh7BG306900
rosa_wichuraiana	Rw1G003140 Rw4G022220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	268
Acc36I	ACCTGC	2 cut(s)	94, 268
AccII	CGCG	1 cut(s)	301
AciI	CCGC	1 cut(s)	299
AclWI	GGATC	2 cut(s)	283, 296
AcyI	GRCGYC	1 cut(s)	201
AfiI	CCNNNNNNNGG	1 cut(s)	28
AgsI	TTSAA	1 cut(s)	350
Alw26I	GTCTC	1 cut(s)	326
AlwI	GGATC	2 cut(s)	283, 296
Ama87I	CYCGRG	1 cut(s)	178
AspS9I	GGNCC	1 cut(s)	32
AsuHPI	GGTGA	1 cut(s)	104
AvaI	CYCGRG	1 cut(s)	178
AvaII	GGWCC	1 cut(s)	32
BamHI	GGATCC	1 cut(s)	288
BbsI	GAAGAC	1 cut(s)	357
BccI	CCATC	2 cut(s)	150, 177
BcgI	CGANNNNNNTGC	2 cut(s)	266, 300
BcoDI	GTCTC	1 cut(s)	326
BfuAI	ACCTGC	2 cut(s)	94, 268
BglI	GCCNNNNNGGC	1 cut(s)	180
Bme18I	GGWCC	1 cut(s)	32
BmeT110I	CYCGRG	1 cut(s)	178
BmgT120I	GGNCC	1 cut(s)	32
BmiI	GGNNCC	3 cut(s)	20, 33, 290
BpiI	GAAGAC	1 cut(s)	357
BsaHI	GRCGYC	1 cut(s)	201
BsaJI	CCNNGG	2 cut(s)	38, 66
BsaWI	WCCGGW	1 cut(s)	21
Bsc4I	CCNNNNNNNGG	1 cut(s)	28
BseDI	CCNNGG	2 cut(s)	38, 66
BseLI	CCNNNNNNNGG	1 cut(s)	28
BseRI	GAGGAG	1 cut(s)	58
Bsh1236I	CGCG	1 cut(s)	301
Bsh1285I	CGRYCG	1 cut(s)	299
BsiEI	CGRYCG	1 cut(s)	299
BsiHKCI	CYCGRG	1 cut(s)	178
BsiSI	CCGG	1 cut(s)	22
BslFI	GGGAC	2 cut(s)	45, 357
BslI	CCNNNNNNNGG	1 cut(s)	28
BsmAI	GTCTC	1 cut(s)	326
BsmFI	GGGAC	2 cut(s)	45, 357
BsoBI	CYCGRG	1 cut(s)	178
Bsp143I	GATC	2 cut(s)	288, 357
BspACI	CCGC	1 cut(s)	299
BspFNI	CGCG	1 cut(s)	301
BspLI	GGNNCC	3 cut(s)	20, 33, 290
BspMI	ACCTGC	2 cut(s)	94, 268
BspPI	GGATC	2 cut(s)	283, 296
BssECI	CCNNGG	2 cut(s)	38, 66
BssMI	GATC	2 cut(s)	288, 357
BssNI	GRCGYC	1 cut(s)	201
BssT1I	CCWWGG	2 cut(s)	38, 66
Bst4CI	ACNGT	1 cut(s)	266
Bst6I	CTCTTC	2 cut(s)	8, 321
BstACI	GRCGYC	1 cut(s)	201
BstC8I	GCNNGC	1 cut(s)	138
BstFNI	CGCG	1 cut(s)	301
BstKTI	GATC	2 cut(s)	291, 360
BstMAI	GTCTC	1 cut(s)	326
BstMBI	GATC	2 cut(s)	288, 357
BstMCI	CGRYCG	1 cut(s)	299
BstMWI	GCNNNNNNNGC	2 cut(s)	25, 180
BstNSI	RCATGY	1 cut(s)	224
BstUI	CGCG	1 cut(s)	301
BstV2I	GAAGAC	1 cut(s)	357
BstX2I	RGATCY	1 cut(s)	288
BstYI	RGATCY	1 cut(s)	288
BtgZI	GCGATG	1 cut(s)	155
BveI	ACCTGC	2 cut(s)	94, 268
Cac8I	GCNNGC	1 cut(s)	138
Cfr13I	GGNCC	1 cut(s)	32
CseI	GACGC	1 cut(s)	209
CviAII	CATG	2 cut(s)	94, 221
CviJI	RGCY	3 cut(s)	19, 140, 195
CviKI_1	RGCY	3 cut(s)	19, 140, 195
DpnI	GATC	2 cut(s)	290, 359
DpnII	GATC	2 cut(s)	288, 357
Eam1104I	CTCTTC	2 cut(s)	8, 321
EarI	CTCTTC	2 cut(s)	8, 321
Eco130I	CCWWGG	2 cut(s)	38, 66
Eco32I	GATATC	1 cut(s)	110
Eco47I	GGWCC	1 cut(s)	32
Eco88I	CYCGRG	1 cut(s)	178
EcoO109I	RGGNCCY	1 cut(s)	32
EcoRV	GATATC	1 cut(s)	110
EcoT14I	CCWWGG	2 cut(s)	38, 66
ErhI	CCWWGG	2 cut(s)	38, 66
FaeI	CATG	2 cut(s)	97, 224
FaiI	YATR	4 cut(s)	81, 95, 153, 222
FaqI	GGGAC	2 cut(s)	45, 357
FatI	CATG	2 cut(s)	93, 220
HapII	CCGG	1 cut(s)	22
HgaI	GACGC	1 cut(s)	209
Hin1I	GRCGYC	1 cut(s)	201
Hin1II	CATG	2 cut(s)	97, 224
HinfI	GANTC	2 cut(s)	62, 319
HpaII	CCGG	1 cut(s)	22
HphI	GGTGA	1 cut(s)	104
Hpy188I	TCNGA	3 cut(s)	61, 75, 288
Hpy188III	TCNNGA	2 cut(s)	316, 323
HpyCH4III	ACNGT	1 cut(s)	266
HpyCH4V	TGCA	4 cut(s)	28, 89, 119, 259
HpyF10VI	GCNNNNNNNGC	2 cut(s)	25, 180
Hsp92I	GRCGYC	1 cut(s)	201
Hsp92II	CATG	2 cut(s)	97, 224
Kzo9I	GATC	2 cut(s)	288, 357
LmnI	GCTCC	1 cut(s)	24
LpnPI	CCDG	6 cut(s)	14, 35, 99, 129, 210, 263
MalI	GATC	2 cut(s)	290, 359
MboI	GATC	2 cut(s)	288, 357
MboII	GAAGA	3 cut(s)	25, 338, 362
MflI	RGATCY	1 cut(s)	288
MlyI	GAGTC	2 cut(s)	71, 328
MmeI	TCCRAC	1 cut(s)	316
MseI	TTAA	2 cut(s)	240, 367
MspI	CCGG	1 cut(s)	22
MvnI	CGCG	1 cut(s)	301
MwoI	GCNNNNNNNGC	2 cut(s)	25, 180
NdeII	GATC	2 cut(s)	288, 357
NlaIII	CATG	2 cut(s)	97, 224
NlaIV	GGNNCC	3 cut(s)	20, 33, 290
NspI	RCATGY	1 cut(s)	224
PaqCI	CACCTGC	1 cut(s)	268
PcsI	WCGNNNNNNNCGW	2 cut(s)	292, 321
PleI	GAGTC	2 cut(s)	70, 327
PpsI	GAGTC	2 cut(s)	70, 327
PpuMI	RGGWCCY	1 cut(s)	32
Psp5II	RGGWCCY	1 cut(s)	32
PspN4I	GGNNCC	3 cut(s)	20, 33, 290
PspPI	GGNCC	1 cut(s)	32
PspPPI	RGGWCCY	1 cut(s)	32
PsuI	RGATCY	1 cut(s)	288
SaqAI	TTAA	2 cut(s)	240, 367
Sau3AI	GATC	2 cut(s)	288, 357
Sau96I	GGNCC	1 cut(s)	32
SchI	GAGTC	2 cut(s)	71, 328
SetI	ASST	8 cut(s)	37, 72, 88, 217, 246, 282, 333, 339
SinI	GGWCC	1 cut(s)	32
SsiI	CCGC	1 cut(s)	299
StyI	CCWWGG	2 cut(s)	38, 66
TaaI	ACNGT	1 cut(s)	266
TaqI	TCGA	3 cut(s)	164, 324, 360
Tru1I	TTAA	2 cut(s)	240, 367
Tru9I	TTAA	2 cut(s)	240, 367
TspDTI	ATGAA	2 cut(s)	96, 110
VpaK11BI	GGWCC	1 cut(s)	32
XceI	RCATGY	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.