Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0001676

Physical Location & Seq

Genomic Coordinates Reverse (-)

7881131 .. 7906303

Gene Structure 25173 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG036400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGCTGGTGTTATCCCAGCGAATCTGGATGAGTATTTCAAAGCTTATTACGCTGCATTAAGAAAAAGAAAAAGAAGCAGCAGCAGCAAAGAGTCGTCAGGTTGGCATGAAGTCAAAACTTCGAAGGTGGAAAACAAGATAATGTTGATTGGGAAGAGGCTCCGGTTGCAGGGACCTCCAAGGAGGAGGACACTACAATCAGAGTCCAAGGTTCAGAACTATGAACCTGCAACCATGAAATACTTTGGATATCACCCTGCATTGACACTTGATGAGGATGTTGACAAGAAGAGGAAGTCATCAATGGCAAGTCAGCCACAACCAGAGTCTCAGCCATGCACTATGGGGACCGGTCGTCCCAGGCCTATCGTCCCTAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004029 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0008150 GO:0008152 GO:0012505 GO:0016491 GO:0016620 GO:0016903 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aldedh

Protein Analysis

126

Amino Acids

14.34

Weight (kDa)

10.04

Isoelectric Point (pI)

84.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001676)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G66658 AT3G66658
fragaria_vesca	FvH4_4g19600
malus_domestica	MD13G1155400.v1.1 MD16G1154800.v1.1
prunus_persica	Prupe.1G118500_v2.0.a1 Prupe.1G118500_v2.0.a1
pyrus_communis	pycom13g13230 pycom16g13120
rosa_chinensis	RchiOBHm_Chr1g0319361 RchiOBHm_Chr3g0485871 RchiOBHm_Chr4g0424861
rosa_laevigata	RLG00000007414 RLG00000030077
rosa_multiflora	Rmu_sc0005870.1_g000002 Rmu_sc0006754.1_g000006 Rmu_sc0014506.1_g000007 Rmu_sc0016377.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225740 Rroxscaffold_4G00328540 Rroxscaffold_5G00367080
rosa_rugosa	Rorug01G0166300 Rorug02G0293100 Rorug02G0554900 Rorug04G0192400 Rorug04G0199800 Rorug04G0346500
rosa_samantha	Rh1BG349600 Rh1CG003900 Rh1CG038200 Rh1DG031700 Rh1DG139100 Rh1DG263900 Rh2AG629500 Rh2CG592700 Rh2DG371100 Rh2DG650900 Rh2DG656600 Rh3AG263700 Rh3CG371400 Rh4AG036400 Rh4AG043400 Rh4AG077000 Rh4AG257500 Rh4CG273800 Rh4DG258600 Rh7BG306900
rosa_wichuraiana	Rw1G003140 Rw4G022220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	235
AfiI	CCNNNNNNNGG	1 cut(s)	169
AgeI	ACCGGT	1 cut(s)	350
AgsI	TTSAA	1 cut(s)	40
AhdI	GACNNNNNGTC	1 cut(s)	354
AjnI	CCWGG	1 cut(s)	359
AluBI	AGCT	1 cut(s)	44
AluI	AGCT	1 cut(s)	44
Alw26I	GTCTC	1 cut(s)	333
AoxI	GGCC	1 cut(s)	362
ApeKI	GCWGC	4 cut(s)	53, 78, 81, 84
AsiGI	ACCGGT	1 cut(s)	350
AspS9I	GGNCC	2 cut(s)	173, 348
AsuHPI	GGTGA	1 cut(s)	245
AsuII	TTCGAA	1 cut(s)	122
AvaII	GGWCC	2 cut(s)	173, 348
BbvI	GCAGC	4 cut(s)	40, 90, 93, 96
BciT130I	CCWGG	1 cut(s)	361
BcoDI	GTCTC	1 cut(s)	333
BfuAI	ACCTGC	1 cut(s)	235
BisI	GCNGC	4 cut(s)	54, 79, 82, 85
BlsI	GCNGC	4 cut(s)	55, 80, 83, 86
Bme1390I	CCNGG	1 cut(s)	361
Bme18I	GGWCC	2 cut(s)	173, 348
BmeRI	GACNNNNNGTC	1 cut(s)	354
BmgT120I	GGNCC	2 cut(s)	173, 348
BmiI	GGNNCC	3 cut(s)	161, 174, 349
BmrFI	CCNGG	1 cut(s)	361
Bpu14I	TTCGAA	1 cut(s)	122
BsaJI	CCNNGG	3 cut(s)	179, 207, 359
BsaWI	WCCGGW	2 cut(s)	162, 350
Bsc4I	CCNNNNNNNGG	1 cut(s)	169
Bse118I	RCCGGY	1 cut(s)	350
BseBI	CCWGG	1 cut(s)	361
BseDI	CCNNGG	3 cut(s)	179, 207, 359
BseGI	GGATG	2 cut(s)	34, 283
BseLI	CCNNNNNNNGG	1 cut(s)	169
BseMII	CTCAG	1 cut(s)	344
BseRI	GAGGAG	1 cut(s)	199
BseXI	GCAGC	4 cut(s)	40, 90, 93, 96
BseYI	CCCAGC	1 cut(s)	16
Bsh1285I	CGRYCG	1 cut(s)	355
BshFI	GGCC	1 cut(s)	364
BshTI	ACCGGT	1 cut(s)	350
BsiEI	CGRYCG	1 cut(s)	355
BsiSI	CCGG	2 cut(s)	163, 351
BslFI	GGGAC	4 cut(s)	186, 342, 356, 361
BslI	CCNNNNNNNGG	1 cut(s)	169
BsmAI	GTCTC	1 cut(s)	333
BsmFI	GGGAC	4 cut(s)	186, 342, 356, 361
BsnI	GGCC	1 cut(s)	364
Bsp119I	TTCGAA	1 cut(s)	122
BspANI	GGCC	1 cut(s)	364
BspCNI	CTCAG	1 cut(s)	343
BspLI	GGNNCC	3 cut(s)	161, 174, 349
BspMI	ACCTGC	1 cut(s)	235
BspT104I	TTCGAA	1 cut(s)	122
BsrFI	RCCGGY	1 cut(s)	350
BssAI	RCCGGY	1 cut(s)	350
BssECI	CCNNGG	3 cut(s)	179, 207, 359
BssT1I	CCWWGG	2 cut(s)	179, 207
Bst2UI	CCWGG	1 cut(s)	361
Bst6I	CTCTTC	2 cut(s)	149, 284
BstBI	TTCGAA	1 cut(s)	122
BstDEI	CTNAG	1 cut(s)	330
BstF5I	GGATG	2 cut(s)	34, 283
BstMAI	GTCTC	1 cut(s)	333
BstMCI	CGRYCG	1 cut(s)	355
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 84, 166
BstNI	CCWGG	1 cut(s)	361
BstSCI	CCNGG	1 cut(s)	359
BstV1I	GCAGC	4 cut(s)	40, 90, 93, 96
BsuRI	GGCC	1 cut(s)	364
BtsCI	GGATG	2 cut(s)	34, 283
BveI	ACCTGC	1 cut(s)	235
Cfr10I	RCCGGY	1 cut(s)	350
Cfr13I	GGNCC	2 cut(s)	173, 348
CspAI	ACCGGT	1 cut(s)	350
CviAII	CATG	3 cut(s)	107, 235, 336
CviJI	RGCY	6 cut(s)	5, 44, 160, 316, 334, 364
CviKI_1	RGCY	6 cut(s)	5, 44, 160, 316, 334, 364
DdeI	CTNAG	1 cut(s)	330
DriI	GACNNNNNGTC	1 cut(s)	354
Eam1104I	CTCTTC	2 cut(s)	149, 284
Eam1105I	GACNNNNNGTC	1 cut(s)	354
EarI	CTCTTC	2 cut(s)	149, 284
Eco130I	CCWWGG	2 cut(s)	179, 207
Eco147I	AGGCCT	1 cut(s)	364
Eco32I	GATATC	1 cut(s)	251
Eco47I	GGWCC	2 cut(s)	173, 348
EcoO109I	RGGNCCY	1 cut(s)	173
EcoRII	CCWGG	1 cut(s)	359
EcoRV	GATATC	1 cut(s)	251
EcoT14I	CCWWGG	2 cut(s)	179, 207
ErhI	CCWWGG	2 cut(s)	179, 207
FaeI	CATG	3 cut(s)	110, 238, 339
FaiI	YATR	5 cut(s)	108, 222, 236, 337, 344
FaqI	GGGAC	4 cut(s)	186, 342, 356, 361
FatI	CATG	3 cut(s)	106, 234, 335
Fnu4HI	GCNGC	4 cut(s)	54, 79, 82, 85
FokI	GGATG	2 cut(s)	41, 290
Fsp4HI	GCNGC	4 cut(s)	54, 79, 82, 85
GluI	GCNGC	4 cut(s)	54, 79, 82, 85
GsaI	CCCAGC	1 cut(s)	20
HaeIII	GGCC	1 cut(s)	364
HapII	CCGG	2 cut(s)	163, 351
Hin1II	CATG	3 cut(s)	110, 238, 339
HincII	GTYRAC	1 cut(s)	283
HindII	GTYRAC	1 cut(s)	283
HindIII	AAGCTT	1 cut(s)	42
HinfI	GANTC	4 cut(s)	22, 92, 203, 326
HpaII	CCGG	2 cut(s)	163, 351
HphI	GGTGA	1 cut(s)	245
Hpy166II	GTNNAC	1 cut(s)	283
Hpy188I	TCNGA	2 cut(s)	202, 216
Hpy188III	TCNNGA	1 cut(s)	26
Hpy8I	GTNNAC	1 cut(s)	283
HpyAV	CCTTC	1 cut(s)	118
HpyCH4V	TGCA	5 cut(s)	56, 169, 230, 260, 339
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 84, 166
HpyF3I	CTNAG	1 cut(s)	330
Hsp92II	CATG	3 cut(s)	110, 238, 339
LmnI	GCTCC	1 cut(s)	165
Lsp1109I	GCAGC	4 cut(s)	40, 90, 93, 96
MboII	GAAGA	2 cut(s)	166, 301
MlyI	GAGTC	3 cut(s)	101, 212, 335
MnlI	CCTC	6 cut(s)	150, 177, 180, 186, 268, 285
MseI	TTAA	1 cut(s)	59
MspI	CCGG	2 cut(s)	163, 351
MspR9I	CCNGG	1 cut(s)	361
MvaI	CCWGG	1 cut(s)	361
MwoI	GCNNNNNNNGC	3 cut(s)	50, 84, 166
NlaIII	CATG	3 cut(s)	110, 238, 339
NlaIV	GGNNCC	3 cut(s)	161, 174, 349
NspV	TTCGAA	1 cut(s)	122
PceI	AGGCCT	1 cut(s)	364
PfeI	GAWTC	1 cut(s)	22
PinAI	ACCGGT	1 cut(s)	350
PkrI	GCNGC	4 cut(s)	55, 80, 83, 86
PleI	GAGTC	3 cut(s)	100, 211, 334
PpsI	GAGTC	3 cut(s)	100, 211, 334
PpuMI	RGGWCCY	1 cut(s)	173
Psp5II	RGGWCCY	1 cut(s)	173
Psp6I	CCWGG	1 cut(s)	359
PspFI	CCCAGC	1 cut(s)	16
PspGI	CCWGG	1 cut(s)	359
PspN4I	GGNNCC	3 cut(s)	161, 174, 349
PspPI	GGNCC	2 cut(s)	173, 348
PspPPI	RGGWCCY	1 cut(s)	173
SaqAI	TTAA	1 cut(s)	59
SatI	GCNGC	4 cut(s)	54, 79, 82, 85
Sau96I	GGNCC	2 cut(s)	173, 348
SchI	GAGTC	3 cut(s)	101, 212, 335
ScrFI	CCNGG	1 cut(s)	361
SetI	ASST	6 cut(s)	46, 103, 129, 178, 213, 229
SfuI	TTCGAA	1 cut(s)	122
SinI	GGWCC	2 cut(s)	173, 348
SseBI	AGGCCT	1 cut(s)	364
StuI	AGGCCT	1 cut(s)	364
StyD4I	CCNGG	1 cut(s)	359
StyI	CCWWGG	2 cut(s)	179, 207
TaqI	TCGA	1 cut(s)	122
TfiI	GAWTC	1 cut(s)	22
Tru1I	TTAA	1 cut(s)	59
Tru9I	TTAA	1 cut(s)	59
TseI	GCWGC	4 cut(s)	53, 78, 81, 84
TspDTI	ATGAA	3 cut(s)	123, 237, 251
VpaK11BI	GGWCC	2 cut(s)	173, 348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.