Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0001676

Physical Location & Seq

Genomic Coordinates Forward (+)

4632375 .. 4633252

Gene Structure 878 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG031700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGGCAGTGTTGGACGATGGGAATCAGAGCCAGGAGAACAGTTTCATATATGGACCTCCAAGGGAAAGGACAGCGCAATCAGAGACCAAGGTTCAGTGCTATGAACCTGCAATCATGAAATACTTGGGATATTACCCTGCATTGACACCTGATGAGGTCAAGGAGCGGGTAGCACTAGCAAGGAAGGCACAAAAATCATGGGCAAATAGTAGCTTCAAGCAAAGACGCCTGTTTCTTCGGATTATTCTTAAGTATATAATAGAACACCAAGACCTTATAAGTGAGTTCAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004029 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0008150 GO:0008152 GO:0012505 GO:0016491 GO:0016620 GO:0016903 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aldedh

Protein Analysis

97

Amino Acids

11.32

Weight (kDa)

8.73

Isoelectric Point (pI)

47.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldedh	PF00171	25 - 95	1e-08	Aldehyde dehydrogenase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001676)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G66658 AT3G66658
fragaria_vesca	FvH4_4g19600
malus_domestica	MD13G1155400.v1.1 MD16G1154800.v1.1
prunus_persica	Prupe.1G118500_v2.0.a1 Prupe.1G118500_v2.0.a1
pyrus_communis	pycom13g13230 pycom16g13120
rosa_chinensis	RchiOBHm_Chr1g0319361 RchiOBHm_Chr3g0485871 RchiOBHm_Chr4g0424861
rosa_laevigata	RLG00000007414 RLG00000030077
rosa_multiflora	Rmu_sc0005870.1_g000002 Rmu_sc0006754.1_g000006 Rmu_sc0014506.1_g000007 Rmu_sc0016377.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225740 Rroxscaffold_4G00328540 Rroxscaffold_5G00367080
rosa_rugosa	Rorug01G0166300 Rorug02G0293100 Rorug02G0554900 Rorug04G0192400 Rorug04G0199800 Rorug04G0346500
rosa_samantha	Rh1BG349600 Rh1CG003900 Rh1CG038200 Rh1DG031700 Rh1DG139100 Rh1DG263900 Rh2AG629500 Rh2CG592700 Rh2DG371100 Rh2DG650900 Rh2DG656600 Rh3AG263700 Rh3CG371400 Rh4AG036400 Rh4AG043400 Rh4AG077000 Rh4AG257500 Rh4CG273800 Rh4DG258600 Rh7BG306900
rosa_wichuraiana	Rw1G003140 Rw4G022220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	278
Acc36I	ACCTGC	1 cut(s)	115
AccBSI	CCGCTC	1 cut(s)	166
AciI	CCGC	1 cut(s)	166
AcyI	GRCGYC	1 cut(s)	226
AflII	CTTAAG	1 cut(s)	248
AgsI	TTSAA	1 cut(s)	217
AjnI	CCWGG	1 cut(s)	30
AluBI	AGCT	1 cut(s)	213
AluI	AGCT	1 cut(s)	213
Alw26I	GTCTC	1 cut(s)	77
Asp700I	GAANNNNTTC	1 cut(s)	41
AspLEI	GCGC	1 cut(s)	76
AspS9I	GGNCC	1 cut(s)	53
AvaII	GGWCC	1 cut(s)	53
BccI	CCATC	1 cut(s)	11
BciT130I	CCWGG	1 cut(s)	32
BcoDI	GTCTC	1 cut(s)	77
BfaI	CTAG	1 cut(s)	176
BfrI	CTTAAG	1 cut(s)	248
BfuAI	ACCTGC	1 cut(s)	115
Bme1390I	CCNGG	1 cut(s)	32
Bme18I	GGWCC	1 cut(s)	53
BmgT120I	GGNCC	1 cut(s)	53
BmrFI	CCNGG	1 cut(s)	32
BsaBI	GATNNNNATC	1 cut(s)	21
BsaHI	GRCGYC	1 cut(s)	226
BsaI	GGTCTC	1 cut(s)	77
BsaJI	CCNNGG	2 cut(s)	59, 87
Bse8I	GATNNNNATC	1 cut(s)	21
BseBI	CCWGG	1 cut(s)	32
BseDI	CCNNGG	2 cut(s)	59, 87
BseJI	GATNNNNATC	1 cut(s)	21
BsmAI	GTCTC	1 cut(s)	77
Bso31I	GGTCTC	1 cut(s)	77
BspACI	CCGC	1 cut(s)	166
BspHI	TCATGA	1 cut(s)	114
BspMI	ACCTGC	1 cut(s)	115
BspTI	CTTAAG	1 cut(s)	248
BspTNI	GGTCTC	1 cut(s)	77
BsrBI	CCGCTC	1 cut(s)	166
BssECI	CCNNGG	2 cut(s)	59, 87
BssNI	GRCGYC	1 cut(s)	226
BssT1I	CCWWGG	2 cut(s)	59, 87
Bst2UI	CCWGG	1 cut(s)	32
Bst4CI	ACNGT	1 cut(s)	41
BstACI	GRCGYC	1 cut(s)	226
BstAFI	CTTAAG	1 cut(s)	248
BstHHI	GCGC	1 cut(s)	76
BstMAI	GTCTC	1 cut(s)	77
BstMWI	GCNNNNNNNGC	1 cut(s)	185
BstNI	CCWGG	1 cut(s)	32
BstSCI	CCNGG	1 cut(s)	30
BtsI	GCAGTG	1 cut(s)	12
BtsIMutI	CAGTG	2 cut(s)	12, 101
BveI	ACCTGC	1 cut(s)	115
CciI	TCATGA	1 cut(s)	114
CfoI	GCGC	1 cut(s)	76
Cfr13I	GGNCC	1 cut(s)	53
CseI	GACGC	1 cut(s)	234
CviAII	CATG	2 cut(s)	115, 198
CviJI	RGCY	2 cut(s)	30, 213
CviKI_1	RGCY	2 cut(s)	30, 213
Eco130I	CCWWGG	2 cut(s)	59, 87
Eco31I	GGTCTC	1 cut(s)	77
Eco47I	GGWCC	1 cut(s)	53
EcoRII	CCWGG	1 cut(s)	30
EcoT14I	CCWWGG	2 cut(s)	59, 87
ErhI	CCWWGG	2 cut(s)	59, 87
FaeI	CATG	2 cut(s)	118, 201
FaiI	YATR	9 cut(s)	47, 49, 51, 102, 116, 199, 255, 257, 278
FatI	CATG	2 cut(s)	114, 197
FauI	CCCGC	1 cut(s)	159
FspBI	CTAG	1 cut(s)	176
GlaI	GCGC	1 cut(s)	75
HgaI	GACGC	1 cut(s)	234
HhaI	GCGC	1 cut(s)	76
Hin1I	GRCGYC	1 cut(s)	226
Hin1II	CATG	2 cut(s)	118, 201
Hin6I	GCGC	1 cut(s)	74
HinP1I	GCGC	1 cut(s)	74
HinfI	GANTC	1 cut(s)	22
Hpy188I	TCNGA	3 cut(s)	27, 82, 240
Hpy188III	TCNNGA	1 cut(s)	115
HpyAV	CCTTC	1 cut(s)	178
HpyCH4III	ACNGT	1 cut(s)	41
HpyCH4V	TGCA	2 cut(s)	110, 140
HpyF10VI	GCNNNNNNNGC	1 cut(s)	185
Hsp92I	GRCGYC	1 cut(s)	226
Hsp92II	CATG	2 cut(s)	118, 201
HspAI	GCGC	1 cut(s)	74
LmnI	GCTCC	1 cut(s)	163
LpnPI	CCDG	6 cut(s)	17, 44, 120, 150, 162, 242
MaeI	CTAG	1 cut(s)	176
MbiI	CCGCTC	1 cut(s)	166
MboII	GAAGA	1 cut(s)	227
MnlI	CCTC	2 cut(s)	66, 148
MroXI	GAANNNNTTC	1 cut(s)	41
MseI	TTAA	1 cut(s)	249
MspCI	CTTAAG	1 cut(s)	248
MspR9I	CCNGG	1 cut(s)	32
MvaI	CCWGG	1 cut(s)	32
MwoI	GCNNNNNNNGC	1 cut(s)	185
NlaIII	CATG	2 cut(s)	118, 201
PagI	TCATGA	1 cut(s)	114
PdmI	GAANNNNTTC	1 cut(s)	41
PfeI	GAWTC	1 cut(s)	22
PsiI	TTATAA	1 cut(s)	278
Psp6I	CCWGG	1 cut(s)	30
PspGI	CCWGG	1 cut(s)	30
PspPI	GGNCC	1 cut(s)	53
SaqAI	TTAA	1 cut(s)	249
Sau96I	GGNCC	1 cut(s)	53
ScrFI	CCNGG	1 cut(s)	32
SetI	ASST	7 cut(s)	58, 93, 109, 151, 159, 215, 276
SinI	GGWCC	1 cut(s)	53
SmlI	CTYRAG	1 cut(s)	248
SmoI	CTYRAG	1 cut(s)	248
SsiI	CCGC	1 cut(s)	166
SspMI	CTAG	1 cut(s)	176
StyD4I	CCNGG	1 cut(s)	30
StyI	CCWWGG	2 cut(s)	59, 87
TaaI	ACNGT	1 cut(s)	41
TfiI	GAWTC	1 cut(s)	22
Tru1I	TTAA	1 cut(s)	249
Tru9I	TTAA	1 cut(s)	249
TscAI	CASTG	2 cut(s)	12, 101
TspDTI	ATGAA	3 cut(s)	34, 117, 131
TspRI	CASTG	2 cut(s)	12, 101
Vha464I	CTTAAG	1 cut(s)	248
VpaK11BI	GGWCC	1 cut(s)	53
XmnI	GAANNNNTTC	1 cut(s)	41
XspI	CTAG	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.