Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001676

Physical Location & Seq

Genomic Coordinates Reverse (-)

85443122 .. 85445463

Gene Structure 2342 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG629500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGCATCTACCTTTTGAAGGTGGCTCTTTATCGGGAGCTCCAAGGGGAAGGACACTACAATCAGAGACCAAGTTTCAGTGCTATGAACCTGCAACCATGAAATACTTTGGATATTACCATGCATTGACACCTGATGAGGTCAAGGAGCGGGTAGCACTAGCAAGGAAGGCACAAAAAACATCGGCAAAGATCAAGCAAAGACGCATGTTTCTTCGGAATACTCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004029 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0008150 GO:0008152 GO:0012505 GO:0016491 GO:0016620 GO:0016903 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aldedh

Protein Analysis

75

Amino Acids

8.64

Weight (kDa)

10.08

Isoelectric Point (pI)

51.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001676)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G66658 AT3G66658
fragaria_vesca	FvH4_4g19600
malus_domestica	MD13G1155400.v1.1 MD16G1154800.v1.1
prunus_persica	Prupe.1G118500_v2.0.a1 Prupe.1G118500_v2.0.a1
pyrus_communis	pycom13g13230 pycom16g13120
rosa_chinensis	RchiOBHm_Chr1g0319361 RchiOBHm_Chr3g0485871 RchiOBHm_Chr4g0424861
rosa_laevigata	RLG00000007414 RLG00000030077
rosa_multiflora	Rmu_sc0005870.1_g000002 Rmu_sc0006754.1_g000006 Rmu_sc0014506.1_g000007 Rmu_sc0016377.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225740 Rroxscaffold_4G00328540 Rroxscaffold_5G00367080
rosa_rugosa	Rorug01G0166300 Rorug02G0293100 Rorug02G0554900 Rorug04G0192400 Rorug04G0199800 Rorug04G0346500
rosa_samantha	Rh1BG349600 Rh1CG003900 Rh1CG038200 Rh1DG031700 Rh1DG139100 Rh1DG263900 Rh2AG629500 Rh2CG592700 Rh2DG371100 Rh2DG650900 Rh2DG656600 Rh3AG263700 Rh3CG371400 Rh4AG036400 Rh4AG043400 Rh4AG077000 Rh4AG257500 Rh4CG273800 Rh4DG258600 Rh7BG306900
rosa_wichuraiana	Rw1G003140 Rw4G022220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	97
AccBSI	CCGCTC	1 cut(s)	148
AciI	CCGC	1 cut(s)	148
AfiI	CCNNNNNNNGG	1 cut(s)	17
AgsI	TTSAA	1 cut(s)	17
AluBI	AGCT	1 cut(s)	38
AluI	AGCT	1 cut(s)	38
Alw21I	GWGCWC	1 cut(s)	40
Alw26I	GTCTC	1 cut(s)	59
BanII	GRGCYC	1 cut(s)	40
Bbv12I	GWGCWC	1 cut(s)	40
BcoDI	GTCTC	1 cut(s)	59
BfaI	CTAG	1 cut(s)	158
BfuAI	ACCTGC	1 cut(s)	97
BmsI	GCATC	1 cut(s)	13
BsaI	GGTCTC	1 cut(s)	59
BsaJI	CCNNGG	1 cut(s)	41
Bsc4I	CCNNNNNNNGG	1 cut(s)	17
BseDI	CCNNGG	1 cut(s)	41
BseLI	CCNNNNNNNGG	1 cut(s)	17
BsiHKAI	GWGCWC	1 cut(s)	40
BslI	CCNNNNNNNGG	1 cut(s)	17
BsmAI	GTCTC	1 cut(s)	59
Bso31I	GGTCTC	1 cut(s)	59
Bsp1286I	GDGCHC	1 cut(s)	40
Bsp143I	GATC	1 cut(s)	189
BspACI	CCGC	1 cut(s)	148
BspMI	ACCTGC	1 cut(s)	97
BspTNI	GGTCTC	1 cut(s)	59
BsrBI	CCGCTC	1 cut(s)	148
BssECI	CCNNGG	1 cut(s)	41
BssMI	GATC	1 cut(s)	189
BssT1I	CCWWGG	1 cut(s)	41
BstENI	CCTNNNNNAGG	1 cut(s)	15
BstKTI	GATC	1 cut(s)	192
BstMAI	GTCTC	1 cut(s)	59
BstMBI	GATC	1 cut(s)	189
BstMWI	GCNNNNNNNGC	1 cut(s)	167
BstNSI	RCATGY	1 cut(s)	208
BtsIMutI	CAGTG	1 cut(s)	83
BveI	ACCTGC	1 cut(s)	97
CseI	GACGC	1 cut(s)	210
CviAII	CATG	3 cut(s)	97, 119, 205
CviJI	RGCY	2 cut(s)	24, 38
CviKI_1	RGCY	2 cut(s)	24, 38
DpnI	GATC	1 cut(s)	191
DpnII	GATC	1 cut(s)	189
Ecl136II	GAGCTC	1 cut(s)	38
Eco130I	CCWWGG	1 cut(s)	41
Eco24I	GRGCYC	1 cut(s)	40
Eco31I	GGTCTC	1 cut(s)	59
Eco53kI	GAGCTC	1 cut(s)	38
EcoICRI	GAGCTC	1 cut(s)	38
EcoNI	CCTNNNNNAGG	1 cut(s)	15
EcoT14I	CCWWGG	1 cut(s)	41
EcoT22I	ATGCAT	2 cut(s)	6, 124
EcoT38I	GRGCYC	1 cut(s)	40
ErhI	CCWWGG	1 cut(s)	41
FaeI	CATG	3 cut(s)	100, 122, 208
FaiI	YATR	4 cut(s)	84, 98, 120, 206
FatI	CATG	3 cut(s)	96, 118, 204
FauI	CCCGC	1 cut(s)	141
FriOI	GRGCYC	1 cut(s)	40
FspBI	CTAG	1 cut(s)	158
HgaI	GACGC	1 cut(s)	210
Hin1II	CATG	3 cut(s)	100, 122, 208
Hpy188I	TCNGA	2 cut(s)	64, 216
Hpy188III	TCNNGA	1 cut(s)	33
HpyAV	CCTTC	3 cut(s)	11, 42, 160
HpyCH4V	TGCA	3 cut(s)	4, 92, 122
HpyF10VI	GCNNNNNNNGC	1 cut(s)	167
Hsp92II	CATG	3 cut(s)	100, 122, 208
Kzo9I	GATC	1 cut(s)	189
LmnI	GCTCC	3 cut(s)	35, 43, 145
LpnPI	CCDG	2 cut(s)	102, 144
LweI	GCATC	1 cut(s)	13
MaeI	CTAG	1 cut(s)	158
MalI	GATC	1 cut(s)	191
MbiI	CCGCTC	1 cut(s)	148
MboI	GATC	1 cut(s)	189
MboII	GAAGA	1 cut(s)	203
MhlI	GDGCHC	1 cut(s)	40
MnlI	CCTC	1 cut(s)	130
Mph1103I	ATGCAT	2 cut(s)	6, 124
MwoI	GCNNNNNNNGC	1 cut(s)	167
NdeII	GATC	1 cut(s)	189
NlaIII	CATG	3 cut(s)	100, 122, 208
NsiI	ATGCAT	2 cut(s)	6, 124
NspI	RCATGY	1 cut(s)	208
Psp124BI	GAGCTC	1 cut(s)	40
SacI	GAGCTC	1 cut(s)	40
Sau3AI	GATC	1 cut(s)	189
SduI	GDGCHC	1 cut(s)	40
SetI	ASST	6 cut(s)	13, 22, 40, 91, 133, 141
SfaNI	GCATC	1 cut(s)	13
SsiI	CCGC	1 cut(s)	148
SspMI	CTAG	1 cut(s)	158
SstI	GAGCTC	1 cut(s)	40
StyI	CCWWGG	1 cut(s)	41
TscAI	CASTG	1 cut(s)	83
TspDTI	ATGAA	2 cut(s)	99, 113
TspRI	CASTG	1 cut(s)	83
XagI	CCTNNNNNAGG	1 cut(s)	15
XceI	RCATGY	1 cut(s)	208
XspI	CTAG	1 cut(s)	158
Zsp2I	ATGCAT	2 cut(s)	6, 124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.