Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006754.1

Orthogroup ID

OG0001676

Physical Location & Seq

Genomic Coordinates Reverse (-)

30516 .. 31926

Gene Structure 1411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006754.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

atggcagtgttggacgatgggaatcagacgcaggagaacagtttcatatatgtacctccgaggggaaggacacagcagtcggaggcaaaggttcagtgctatgaacctgcaaccatgaaatacctgggatattaccctgcattgactcctgttgaggtcaaggagcgggtagcactagcaaggaaggcacagaagacatgggcaaagagtagcttcaagcaaagacgcctgtttcttcggattcttctcaagtatataatagaacaccaagaccttatatgtgaaatatcttcacgtgatacggggaagacaatggtagatgcgtctttaggggagataatgacaacgtgtgagaagatcacttggcttctttcagagggtgagcggtggctaaagcctgaataccggtataaccttctgcctattacgttatctacatctaatgttctctatcattttactattgtgctgtgtaatattccaagaatgtttggtttaattgctgtaccaaggatgaatatttcacaaatgttgacactttctgcttattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004029 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0008150 GO:0008152 GO:0012505 GO:0016491 GO:0016620 GO:0016903 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aldedh

Protein Analysis

183

Amino Acids

21.15

Weight (kDa)

9.16

Isoelectric Point (pI)

37.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001676)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G66658 AT3G66658
fragaria_vesca	FvH4_4g19600
malus_domestica	MD13G1155400.v1.1 MD16G1154800.v1.1
prunus_persica	Prupe.1G118500_v2.0.a1 Prupe.1G118500_v2.0.a1
pyrus_communis	pycom13g13230 pycom16g13120
rosa_chinensis	RchiOBHm_Chr1g0319361 RchiOBHm_Chr3g0485871 RchiOBHm_Chr4g0424861
rosa_laevigata	RLG00000007414 RLG00000030077
rosa_multiflora	Rmu_sc0005870.1_g000002 Rmu_sc0006754.1_g000006 Rmu_sc0014506.1_g000007 Rmu_sc0016377.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225740 Rroxscaffold_4G00328540 Rroxscaffold_5G00367080
rosa_rugosa	Rorug01G0166300 Rorug02G0293100 Rorug02G0554900 Rorug04G0192400 Rorug04G0199800 Rorug04G0346500
rosa_samantha	Rh1BG349600 Rh1CG003900 Rh1CG038200 Rh1DG031700 Rh1DG139100 Rh1DG263900 Rh2AG629500 Rh2CG592700 Rh2DG371100 Rh2DG650900 Rh2DG656600 Rh3AG263700 Rh3CG371400 Rh4AG036400 Rh4AG043400 Rh4AG077000 Rh4AG257500 Rh4CG273800 Rh4DG258600 Rh7BG306900
rosa_wichuraiana	Rw1G003140 Rw4G022220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	76
Acc36I	ACCTGC	1 cut(s)	115
AccBSI	CCGCTC	2 cut(s)	166, 385
AciI	CCGC	2 cut(s)	166, 385
AcvI	CACGTG	1 cut(s)	296
AcyI	GRCGYC	1 cut(s)	226
AfaI	GTAC	2 cut(s)	54, 507
AfiI	CCNNNNNNNGG	1 cut(s)	62
AflIII	ACRYGT	1 cut(s)	347
AgeI	ACCGGT	1 cut(s)	405
AgsI	TTSAA	1 cut(s)	217
AjnI	CCWGG	1 cut(s)	123
AluBI	AGCT	1 cut(s)	213
AluI	AGCT	1 cut(s)	213
AsiGI	ACCGGT	1 cut(s)	405
Asp700I	GAANNNNTTC	1 cut(s)	41
AsuHPI	GGTGA	1 cut(s)	392
BbrPI	CACGTG	1 cut(s)	296
BbsI	GAAGAC	2 cut(s)	200, 314
BccI	CCATC	1 cut(s)	11
BciT130I	CCWGG	1 cut(s)	125
BfaI	CTAG	1 cut(s)	176
BfuAI	ACCTGC	1 cut(s)	115
Bme1390I	CCNGG	1 cut(s)	125
BmrFI	CCNGG	1 cut(s)	125
BmsI	GCATC	1 cut(s)	310
BpiI	GAAGAC	2 cut(s)	200, 314
BpuEI	CTTGAG	1 cut(s)	233
BsaAI	YACGTR	1 cut(s)	296
BsaBI	GATNNNNATC	1 cut(s)	21
BsaHI	GRCGYC	1 cut(s)	226
BsaJI	CCNNGG	3 cut(s)	59, 124, 509
BsaWI	WCCGGW	1 cut(s)	405
Bsc4I	CCNNNNNNNGG	1 cut(s)	62
Bse118I	RCCGGY	1 cut(s)	405
Bse8I	GATNNNNATC	1 cut(s)	21
BseBI	CCWGG	1 cut(s)	125
BseDI	CCNNGG	3 cut(s)	59, 124, 509
BseGI	GGATG	1 cut(s)	519
BseJI	GATNNNNATC	1 cut(s)	21
BseLI	CCNNNNNNNGG	1 cut(s)	62
BshTI	ACCGGT	1 cut(s)	405
BsiSI	CCGG	1 cut(s)	406
BslI	CCNNNNNNNGG	1 cut(s)	62
Bsp143I	GATC	1 cut(s)	357
BspACI	CCGC	2 cut(s)	166, 385
BspMI	ACCTGC	1 cut(s)	115
BsrBI	CCGCTC	2 cut(s)	166, 385
BsrFI	RCCGGY	1 cut(s)	405
BssAI	RCCGGY	1 cut(s)	405
BssECI	CCNNGG	3 cut(s)	59, 124, 509
BssMI	GATC	1 cut(s)	357
BssNI	GRCGYC	1 cut(s)	226
BssT1I	CCWWGG	1 cut(s)	509
Bst2UI	CCWGG	1 cut(s)	125
Bst4CI	ACNGT	1 cut(s)	41
BstACI	GRCGYC	1 cut(s)	226
BstBAI	YACGTR	1 cut(s)	296
BstF5I	GGATG	1 cut(s)	519
BstKTI	GATC	1 cut(s)	360
BstMBI	GATC	1 cut(s)	357
BstMWI	GCNNNNNNNGC	1 cut(s)	185
BstNI	CCWGG	1 cut(s)	125
BstSCI	CCNGG	1 cut(s)	123
BstV2I	GAAGAC	2 cut(s)	200, 314
BtsCI	GGATG	1 cut(s)	519
BtsI	GCAGTG	1 cut(s)	12
BtsIMutI	CAGTG	2 cut(s)	12, 101
BveI	ACCTGC	1 cut(s)	115
Cfr10I	RCCGGY	1 cut(s)	405
CseI	GACGC	3 cut(s)	37, 234, 312
Csp6I	GTAC	2 cut(s)	53, 506
CspAI	ACCGGT	1 cut(s)	405
CviAII	CATG	2 cut(s)	115, 198
CviJI	RGCY	4 cut(s)	213, 367, 391, 397
CviKI_1	RGCY	4 cut(s)	213, 367, 391, 397
CviQI	GTAC	2 cut(s)	53, 506
DpnI	GATC	1 cut(s)	359
DpnII	GATC	1 cut(s)	357
DrdI	GACNNNNNNGTC	1 cut(s)	76
DseDI	GACNNNNNNGTC	1 cut(s)	76
Eco130I	CCWWGG	1 cut(s)	509
Eco72I	CACGTG	1 cut(s)	296
EcoRII	CCWGG	1 cut(s)	123
EcoT14I	CCWWGG	1 cut(s)	509
ErhI	CCWWGG	1 cut(s)	509
FaeI	CATG	2 cut(s)	118, 201
FalI	AAGNNNNNCTT	2 cut(s)	197, 229
FatI	CATG	2 cut(s)	114, 197
FauI	CCCGC	1 cut(s)	159
FokI	GGATG	1 cut(s)	526
FspBI	CTAG	1 cut(s)	176
HapII	CCGG	1 cut(s)	406
HgaI	GACGC	3 cut(s)	37, 234, 312
Hin1I	GRCGYC	1 cut(s)	226
Hin1II	CATG	2 cut(s)	118, 201
HincII	GTYRAC	1 cut(s)	534
HindII	GTYRAC	1 cut(s)	534
HinfI	GANTC	3 cut(s)	22, 145, 241
HpaII	CCGG	1 cut(s)	406
HphI	GGTGA	1 cut(s)	392
Hpy166II	GTNNAC	1 cut(s)	534
Hpy188I	TCNGA	5 cut(s)	27, 60, 82, 240, 376
Hpy8I	GTNNAC	1 cut(s)	534
HpyAV	CCTTC	3 cut(s)	60, 178, 425
HpyCH4III	ACNGT	1 cut(s)	41
HpyCH4IV	ACGT	3 cut(s)	295, 347, 428
HpyCH4V	TGCA	2 cut(s)	110, 140
HpyF10VI	GCNNNNNNNGC	1 cut(s)	185
HpySE526I	ACGT	3 cut(s)	295, 347, 428
Hsp92I	GRCGYC	1 cut(s)	226
Hsp92II	CATG	2 cut(s)	118, 201
Kzo9I	GATC	1 cut(s)	357
LmnI	GCTCC	1 cut(s)	163
LpnPI	CCDG	9 cut(s)	17, 110, 120, 137, 150, 162, 242, 411, 419
LweI	GCATC	1 cut(s)	310
MaeI	CTAG	1 cut(s)	176
MaeII	ACGT	3 cut(s)	295, 347, 428
MalI	GATC	1 cut(s)	359
MbiI	CCGCTC	2 cut(s)	166, 385
MboI	GATC	1 cut(s)	357
MboII	GAAGA	6 cut(s)	205, 227, 236, 282, 319, 367
MluCI	AATT	1 cut(s)	498
MlyI	GAGTC	1 cut(s)	139
MmeI	TCCRAC	1 cut(s)	60
MnlI	CCTC	5 cut(s)	54, 66, 76, 148, 370
MroXI	GAANNNNTTC	1 cut(s)	41
MseI	TTAA	1 cut(s)	497
MspI	CCGG	1 cut(s)	406
MspR9I	CCNGG	1 cut(s)	125
MvaI	CCWGG	1 cut(s)	125
MwoI	GCNNNNNNNGC	1 cut(s)	185
NdeII	GATC	1 cut(s)	357
NlaIII	CATG	2 cut(s)	118, 201
PdmI	GAANNNNTTC	1 cut(s)	41
PfeI	GAWTC	2 cut(s)	22, 241
PinAI	ACCGGT	1 cut(s)	405
PleI	GAGTC	1 cut(s)	139
PmaCI	CACGTG	1 cut(s)	296
PmlI	CACGTG	1 cut(s)	296
PpsI	GAGTC	1 cut(s)	139
Ppu21I	YACGTR	1 cut(s)	296
Psp6I	CCWGG	1 cut(s)	123
PspCI	CACGTG	1 cut(s)	296
PspGI	CCWGG	1 cut(s)	123
RsaI	GTAC	2 cut(s)	54, 507
RsaNI	GTAC	2 cut(s)	53, 506
SaqAI	TTAA	1 cut(s)	497
Sau3AI	GATC	1 cut(s)	357
SchI	GAGTC	1 cut(s)	139
ScrFI	CCNGG	1 cut(s)	125
SfaNI	GCATC	1 cut(s)	310
SmlI	CTYRAG	1 cut(s)	248
SmoI	CTYRAG	1 cut(s)	248
Sse9I	AATT	1 cut(s)	498
SsiI	CCGC	2 cut(s)	166, 385
SspI	AATATT	2 cut(s)	478, 520
SspMI	CTAG	1 cut(s)	176
StyD4I	CCNGG	1 cut(s)	123
StyI	CCWWGG	1 cut(s)	509
TaaI	ACNGT	1 cut(s)	41
TaiI	ACGT	3 cut(s)	298, 350, 431
TasI	AATT	1 cut(s)	498
TfiI	GAWTC	2 cut(s)	22, 241
Tru1I	TTAA	1 cut(s)	497
Tru9I	TTAA	1 cut(s)	497
TscAI	CASTG	2 cut(s)	12, 101
TspDTI	ATGAA	4 cut(s)	34, 117, 131, 530
TspRI	CASTG	2 cut(s)	12, 101
XcmI	CCANNNNNNNNNTGG	1 cut(s)	121
XmnI	GAANNNNTTC	1 cut(s)	41
XspI	CTAG	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.