Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0001676

Physical Location & Seq

Genomic Coordinates Reverse (-)

7441485 .. 7445563

Gene Structure 4079 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG038200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGCTACTAACAATGTTCCAGTGGGTTTGGACAAGGAACTGATTTTTTGGTATGGCAGAGAAGGAGATCGATGGAGTACTGGGTTGAGTTGTTTAAAAAAGAAAGATATTTTACAGCAAACAAGCTTACTGAAACTATACCTGGATGGTTCTTCAAACGAATCAAGACAGTGGATTTCTCTTACAACAACTTCACTTGGGAAAGCTCAAGCTCATTTCCTACTGAATGTGATAGAGGGAGTGTTGTTGGACGATGGGAATCAGAGCCAGGAGAACAGTTTCATATATGGACCTCCAAGGGAAAGGACAGCGCAATCAGAGACCAAGGTTCAGTGCTATGAACCTGCAATCATGAAATACTTGGGATATTACCCTGCATTGACACCTGATGAGAGATATTTGGAGGTTGCACAGAAGGATGAGAGGCCCCCATCAAAAGTGTATTTCCTCATACTTCATTATGAGTCTCCTCCTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004029 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0008150 GO:0008152 GO:0012505 GO:0016491 GO:0016620 GO:0016903 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aldedh

Protein Analysis

159

Amino Acids

18.15

Weight (kDa)

5.43

Isoelectric Point (pI)

48.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001676)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G66658 AT3G66658
fragaria_vesca	FvH4_4g19600
malus_domestica	MD13G1155400.v1.1 MD16G1154800.v1.1
prunus_persica	Prupe.1G118500_v2.0.a1 Prupe.1G118500_v2.0.a1
pyrus_communis	pycom13g13230 pycom16g13120
rosa_chinensis	RchiOBHm_Chr1g0319361 RchiOBHm_Chr3g0485871 RchiOBHm_Chr4g0424861
rosa_laevigata	RLG00000007414 RLG00000030077
rosa_multiflora	Rmu_sc0005870.1_g000002 Rmu_sc0006754.1_g000006 Rmu_sc0014506.1_g000007 Rmu_sc0016377.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225740 Rroxscaffold_4G00328540 Rroxscaffold_5G00367080
rosa_rugosa	Rorug01G0166300 Rorug02G0293100 Rorug02G0554900 Rorug04G0192400 Rorug04G0199800 Rorug04G0346500
rosa_samantha	Rh1BG349600 Rh1CG003900 Rh1CG038200 Rh1DG031700 Rh1DG139100 Rh1DG263900 Rh2AG629500 Rh2CG592700 Rh2DG371100 Rh2DG650900 Rh2DG656600 Rh3AG263700 Rh3CG371400 Rh4AG036400 Rh4AG043400 Rh4AG077000 Rh4AG257500 Rh4CG273800 Rh4DG258600 Rh7BG306900
rosa_wichuraiana	Rw1G003140 Rw4G022220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	352
AfaI	GTAC	1 cut(s)	79
AgsI	TTSAA	1 cut(s)	156
AjnI	CCWGG	2 cut(s)	141, 267
AluBI	AGCT	3 cut(s)	126, 206, 212
AluI	AGCT	3 cut(s)	126, 206, 212
Alw26I	GTCTC	2 cut(s)	314, 471
AoxI	GGCC	1 cut(s)	425
Asp700I	GAANNNNTTC	1 cut(s)	278
AspLEI	GCGC	1 cut(s)	313
AspS9I	GGNCC	2 cut(s)	290, 426
AvaII	GGWCC	1 cut(s)	290
BccI	CCATC	4 cut(s)	66, 140, 248, 439
BciT130I	CCWGG	2 cut(s)	143, 269
BcoDI	GTCTC	2 cut(s)	314, 471
BfuAI	ACCTGC	1 cut(s)	352
BmcAI	AGTACT	1 cut(s)	79
Bme1390I	CCNGG	2 cut(s)	143, 269
Bme18I	GGWCC	1 cut(s)	290
BmgT120I	GGNCC	2 cut(s)	290, 426
BmiI	GGNNCC	1 cut(s)	428
BmrFI	CCNGG	2 cut(s)	143, 269
BmrI	ACTGGG	1 cut(s)	90
BmuI	ACTGGG	1 cut(s)	90
BpuEI	CTTGAG	1 cut(s)	192
Bsa29I	ATCGAT	1 cut(s)	70
BsaBI	GATNNNNATC	1 cut(s)	258
BsaI	GGTCTC	1 cut(s)	314
BsaJI	CCNNGG	2 cut(s)	296, 324
Bse1I	ACTGG	2 cut(s)	20, 85
Bse8I	GATNNNNATC	1 cut(s)	258
BseBI	CCWGG	2 cut(s)	143, 269
BseCI	ATCGAT	1 cut(s)	70
BseDI	CCNNGG	2 cut(s)	296, 324
BseGI	GGATG	2 cut(s)	151, 424
BseJI	GATNNNNATC	1 cut(s)	258
BseNI	ACTGG	2 cut(s)	20, 85
BseRI	GAGGAG	2 cut(s)	459, 462
BshFI	GGCC	1 cut(s)	427
BshVI	ATCGAT	1 cut(s)	70
BsmAI	GTCTC	2 cut(s)	314, 471
BsnI	GGCC	1 cut(s)	427
Bso31I	GGTCTC	1 cut(s)	314
Bsp143I	GATC	1 cut(s)	67
BspANI	GGCC	1 cut(s)	427
BspDI	ATCGAT	1 cut(s)	70
BspHI	TCATGA	1 cut(s)	351
BspLI	GGNNCC	1 cut(s)	428
BspMI	ACCTGC	1 cut(s)	352
BspTNI	GGTCTC	1 cut(s)	314
BsrI	ACTGG	2 cut(s)	20, 85
BssECI	CCNNGG	2 cut(s)	296, 324
BssMI	GATC	1 cut(s)	67
BssT1I	CCWWGG	2 cut(s)	296, 324
Bst2UI	CCWGG	2 cut(s)	143, 269
Bst4CI	ACNGT	2 cut(s)	171, 278
BstF5I	GGATG	2 cut(s)	151, 424
BstHHI	GCGC	1 cut(s)	313
BstKTI	GATC	1 cut(s)	70
BstMAI	GTCTC	2 cut(s)	314, 471
BstMBI	GATC	1 cut(s)	67
BstNI	CCWGG	2 cut(s)	143, 269
BstSCI	CCNGG	2 cut(s)	141, 267
Bsu15I	ATCGAT	1 cut(s)	70
BsuRI	GGCC	1 cut(s)	427
BsuTUI	ATCGAT	1 cut(s)	70
BtsCI	GGATG	2 cut(s)	151, 424
BtsIMutI	CAGTG	3 cut(s)	27, 176, 338
BveI	ACCTGC	1 cut(s)	352
CciI	TCATGA	1 cut(s)	351
CfoI	GCGC	1 cut(s)	313
Cfr13I	GGNCC	2 cut(s)	290, 426
ClaI	ATCGAT	1 cut(s)	70
Csp6I	GTAC	1 cut(s)	78
CviAII	CATG	2 cut(s)	352, 477
CviJI	RGCY	6 cut(s)	5, 126, 206, 212, 267, 427
CviKI_1	RGCY	6 cut(s)	5, 126, 206, 212, 267, 427
CviQI	GTAC	1 cut(s)	78
DpnI	GATC	1 cut(s)	69
DpnII	GATC	1 cut(s)	67
DraI	TTTAAA	1 cut(s)	96
Eco130I	CCWWGG	2 cut(s)	296, 324
Eco31I	GGTCTC	1 cut(s)	314
Eco47I	GGWCC	1 cut(s)	290
EcoO109I	RGGNCCY	1 cut(s)	426
EcoRII	CCWGG	2 cut(s)	141, 267
EcoT14I	CCWWGG	2 cut(s)	296, 324
ErhI	CCWWGG	2 cut(s)	296, 324
FaeI	CATG	2 cut(s)	355, 480
FatI	CATG	2 cut(s)	351, 476
FokI	GGATG	2 cut(s)	158, 431
GlaI	GCGC	1 cut(s)	312
HaeIII	GGCC	1 cut(s)	427
HhaI	GCGC	1 cut(s)	313
Hin1II	CATG	2 cut(s)	355, 480
Hin6I	GCGC	1 cut(s)	311
HinP1I	GCGC	1 cut(s)	311
HindIII	AAGCTT	1 cut(s)	124
HinfI	GANTC	3 cut(s)	161, 259, 464
Hpy188I	TCNGA	2 cut(s)	264, 319
Hpy188III	TCNNGA	2 cut(s)	165, 352
HpyAV	CCTTC	2 cut(s)	56, 409
HpyCH4III	ACNGT	2 cut(s)	171, 278
HpyCH4V	TGCA	3 cut(s)	347, 377, 410
Hsp92II	CATG	2 cut(s)	355, 480
HspAI	GCGC	1 cut(s)	311
Kzo9I	GATC	1 cut(s)	67
LpnPI	CCDG	9 cut(s)	33, 66, 128, 155, 254, 281, 357, 387, 399
MalI	GATC	1 cut(s)	69
MboI	GATC	1 cut(s)	67
MboII	GAAGA	1 cut(s)	144
MlyI	GAGTC	1 cut(s)	473
MmeI	TCCRAC	1 cut(s)	228
MnlI	CCTC	6 cut(s)	229, 303, 397, 417, 458, 480
MroXI	GAANNNNTTC	1 cut(s)	278
MseI	TTAA	1 cut(s)	95
MspR9I	CCNGG	2 cut(s)	143, 269
MvaI	CCWGG	2 cut(s)	143, 269
NdeII	GATC	1 cut(s)	67
NlaIII	CATG	2 cut(s)	355, 480
NlaIV	GGNNCC	1 cut(s)	428
PagI	TCATGA	1 cut(s)	351
PdmI	GAANNNNTTC	1 cut(s)	278
PfeI	GAWTC	2 cut(s)	161, 259
PleI	GAGTC	1 cut(s)	472
PpsI	GAGTC	1 cut(s)	472
Psp6I	CCWGG	2 cut(s)	141, 267
PspGI	CCWGG	2 cut(s)	141, 267
PspN4I	GGNNCC	1 cut(s)	428
PspPI	GGNCC	2 cut(s)	290, 426
RsaI	GTAC	1 cut(s)	79
RsaNI	GTAC	1 cut(s)	78
SaqAI	TTAA	1 cut(s)	95
Sau3AI	GATC	1 cut(s)	67
Sau96I	GGNCC	2 cut(s)	290, 426
ScaI	AGTACT	1 cut(s)	79
SchI	GAGTC	1 cut(s)	473
ScrFI	CCNGG	2 cut(s)	143, 269
SetI	ASST	9 cut(s)	128, 144, 208, 214, 295, 330, 346, 388, 408
SinI	GGWCC	1 cut(s)	290
SmlI	CTYRAG	1 cut(s)	207
SmoI	CTYRAG	1 cut(s)	207
StyD4I	CCNGG	2 cut(s)	141, 267
StyI	CCWWGG	2 cut(s)	296, 324
TaaI	ACNGT	2 cut(s)	171, 278
TaqI	TCGA	1 cut(s)	70
TatI	WGTACW	1 cut(s)	77
TfiI	GAWTC	2 cut(s)	161, 259
Tru1I	TTAA	1 cut(s)	95
Tru9I	TTAA	1 cut(s)	95
TscAI	CASTG	3 cut(s)	27, 176, 338
TspDTI	ATGAA	4 cut(s)	271, 354, 368, 446
TspRI	CASTG	3 cut(s)	27, 176, 338
VpaK11BI	GGWCC	1 cut(s)	290
XmnI	GAANNNNTTC	1 cut(s)	278
ZrmI	AGTACT	1 cut(s)	79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.