Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001676

Physical Location & Seq

Genomic Coordinates Forward (+)

32344456 .. 32344997

Gene Structure 542 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0293100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGAACTCACTTTCTTCTGCCCTGTACACCCCTTGGAATACTAGCCTACATAGTGCAGATACTGCTGATGTATTGATTTCTTACAATGGAACTACTAGGAACTTGAGTGTTTCTTGGACTTATCAAACAACCCCCAACTCTCAAGGGAAAAGTAGTCTTTCTTACCAAGTTGATCTGGCTACTGTTTTGCCACAGTCGGTCACAGTTGGATTTTCAGCTTCTACTGGTAGTAGTGGTTATTTTGGGTTAGCTCGGCTTAAGGATTTTGATCCCTCATACAGCGAGTTAACAGTTTCGAAGAAAAATATCTTGCTAGAGTGGCTTCTCTCAGCTGTTGATGAAAGATTGTATATGGCTTTTGACAAGAAACAGGTAGCGTTTGATGATTGTTGGCATGTGGTGCGCTCATCTGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009927 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0032870 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043424 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Hpt

Protein Analysis

138

Amino Acids

15.19

Weight (kDa)

5.52

Isoelectric Point (pI)

32.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lectin_legB	PF00139	1 - 77	5.9e-18	Legume lectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Publication-ready

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Orthologous Genes (Group: OG0001676)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G66658 AT3G66658
fragaria_vesca	FvH4_4g19600
malus_domestica	MD13G1155400.v1.1 MD16G1154800.v1.1
prunus_persica	Prupe.1G118500_v2.0.a1 Prupe.1G118500_v2.0.a1
pyrus_communis	pycom13g13230 pycom16g13120
rosa_chinensis	RchiOBHm_Chr1g0319361 RchiOBHm_Chr3g0485871 RchiOBHm_Chr4g0424861
rosa_laevigata	RLG00000007414 RLG00000030077
rosa_multiflora	Rmu_sc0005870.1_g000002 Rmu_sc0006754.1_g000006 Rmu_sc0014506.1_g000007 Rmu_sc0016377.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225740 Rroxscaffold_4G00328540 Rroxscaffold_5G00367080
rosa_rugosa	Rorug01G0166300 Rorug02G0293100 Rorug02G0554900 Rorug04G0192400 Rorug04G0199800 Rorug04G0346500
rosa_samantha	Rh1BG349600 Rh1CG003900 Rh1CG038200 Rh1DG031700 Rh1DG139100 Rh1DG263900 Rh2AG629500 Rh2CG592700 Rh2DG371100 Rh2DG650900 Rh2DG656600 Rh3AG263700 Rh3CG371400 Rh4AG036400 Rh4AG043400 Rh4AG077000 Rh4AG257500 Rh4CG273800 Rh4DG258600 Rh7BG306900
rosa_wichuraiana	Rw1G003140 Rw4G022220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	263
AfaI	GTAC	1 cut(s)	26
AflII	CTTAAG	1 cut(s)	257
AluBI	AGCT	3 cut(s)	218, 251, 332
AluI	AGCT	3 cut(s)	218, 251, 332
AlwI	GGATC	1 cut(s)	263
AlwNI	CAGNNNCTG	1 cut(s)	62
AspLEI	GCGC	1 cut(s)	405
AsuII	TTCGAA	1 cut(s)	296
BfaI	CTAG	3 cut(s)	42, 96, 314
BfrI	CTTAAG	1 cut(s)	257
Bpu14I	TTCGAA	1 cut(s)	296
BpuEI	CTTGAG	2 cut(s)	124, 126
BsaBI	GATNNNNATC	1 cut(s)	267
BsaJI	CCNNGG	1 cut(s)	32
Bse1I	ACTGG	1 cut(s)	229
Bse8I	GATNNNNATC	1 cut(s)	267
BseDI	CCNNGG	1 cut(s)	32
BseJI	GATNNNNATC	1 cut(s)	267
BseMII	CTCAG	1 cut(s)	342
BseNI	ACTGG	1 cut(s)	229
BsgI	GTGCAG	1 cut(s)	75
Bsp119I	TTCGAA	1 cut(s)	296
Bsp1407I	TGTACA	1 cut(s)	24
Bsp143I	GATC	2 cut(s)	172, 268
BspCNI	CTCAG	1 cut(s)	341
BspPI	GGATC	1 cut(s)	263
BspT104I	TTCGAA	1 cut(s)	296
BspTI	CTTAAG	1 cut(s)	257
BsrGI	TGTACA	1 cut(s)	24
BsrI	ACTGG	1 cut(s)	229
BssECI	CCNNGG	1 cut(s)	32
BssMI	GATC	2 cut(s)	172, 268
BssT1I	CCWWGG	1 cut(s)	32
Bst4CI	ACNGT	4 cut(s)	184, 195, 205, 292
BstAFI	CTTAAG	1 cut(s)	257
BstAPI	GCANNNNNTGC	2 cut(s)	62, 400
BstAUI	TGTACA	1 cut(s)	24
BstBI	TTCGAA	1 cut(s)	296
BstDEI	CTNAG	1 cut(s)	328
BstHHI	GCGC	1 cut(s)	405
BstKTI	GATC	2 cut(s)	175, 271
BstMBI	GATC	2 cut(s)	172, 268
BstMWI	GCNNNNNNNGC	3 cut(s)	62, 319, 400
BstNSI	RCATGY	1 cut(s)	398
CaiI	CAGNNNCTG	1 cut(s)	62
CfoI	GCGC	1 cut(s)	405
Csp6I	GTAC	1 cut(s)	25
CviAII	CATG	1 cut(s)	395
CviJI	RGCY	8 cut(s)	45, 179, 218, 251, 256, 322, 332, 356
CviKI_1	RGCY	8 cut(s)	45, 179, 218, 251, 256, 322, 332, 356
CviQI	GTAC	1 cut(s)	25
DdeI	CTNAG	1 cut(s)	328
DpnI	GATC	2 cut(s)	174, 270
DpnII	GATC	2 cut(s)	172, 268
Eco130I	CCWWGG	1 cut(s)	32
EcoT14I	CCWWGG	1 cut(s)	32
ErhI	CCWWGG	1 cut(s)	32
FaeI	CATG	1 cut(s)	398
FaiI	YATR	5 cut(s)	51, 277, 351, 353, 396
FatI	CATG	1 cut(s)	394
FspBI	CTAG	3 cut(s)	42, 96, 314
GlaI	GCGC	1 cut(s)	404
HhaI	GCGC	1 cut(s)	405
Hin1II	CATG	1 cut(s)	398
Hin6I	GCGC	1 cut(s)	403
HinP1I	GCGC	1 cut(s)	403
HincII	GTYRAC	1 cut(s)	288
HindII	GTYRAC	1 cut(s)	288
HpaI	GTTAAC	1 cut(s)	288
Hpy166II	GTNNAC	2 cut(s)	27, 288
Hpy188III	TCNNGA	1 cut(s)	411
Hpy8I	GTNNAC	2 cut(s)	27, 288
HpyCH4III	ACNGT	4 cut(s)	184, 195, 205, 292
HpyCH4V	TGCA	1 cut(s)	56
HpyF10VI	GCNNNNNNNGC	3 cut(s)	62, 319, 400
HpyF3I	CTNAG	1 cut(s)	328
Hsp92II	CATG	1 cut(s)	398
HspAI	GCGC	1 cut(s)	403
KspAI	GTTAAC	1 cut(s)	288
Kzo9I	GATC	2 cut(s)	172, 268
LpnPI	CCDG	5 cut(s)	35, 161, 210, 356, 396
MaeI	CTAG	3 cut(s)	42, 96, 314
MaeIII	GTNAC	1 cut(s)	199
MalI	GATC	2 cut(s)	174, 270
MboI	GATC	2 cut(s)	172, 268
MboII	GAAGA	2 cut(s)	6, 310
MmeI	TCCRAC	1 cut(s)	187
MnlI	CCTC	1 cut(s)	283
MseI	TTAA	2 cut(s)	258, 287
MspA1I	CMGCKG	1 cut(s)	332
MspCI	CTTAAG	1 cut(s)	257
MwoI	GCNNNNNNNGC	3 cut(s)	62, 319, 400
NdeII	GATC	2 cut(s)	172, 268
NlaIII	CATG	1 cut(s)	398
NmeAIII	GCCGAG	1 cut(s)	232
NmuCI	GTSAC	1 cut(s)	199
NspI	RCATGY	1 cut(s)	398
NspV	TTCGAA	1 cut(s)	296
PstNI	CAGNNNCTG	1 cut(s)	62
PvuII	CAGCTG	1 cut(s)	332
RsaI	GTAC	1 cut(s)	26
RsaNI	GTAC	1 cut(s)	25
SaqAI	TTAA	2 cut(s)	258, 287
Sau3AI	GATC	2 cut(s)	172, 268
SetI	ASST	4 cut(s)	220, 253, 334, 375
SfuI	TTCGAA	1 cut(s)	296
SmlI	CTYRAG	3 cut(s)	103, 141, 257
SmoI	CTYRAG	3 cut(s)	103, 141, 257
SspMI	CTAG	3 cut(s)	42, 96, 314
StyI	CCWWGG	1 cut(s)	32
TaaI	ACNGT	4 cut(s)	184, 195, 205, 292
TaqI	TCGA	1 cut(s)	296
TaqII	GACCGA	1 cut(s)	187
TatI	WGTACW	1 cut(s)	24
Tru1I	TTAA	2 cut(s)	258, 287
Tru9I	TTAA	2 cut(s)	258, 287
TseFI	GTSAC	1 cut(s)	199
Tsp45I	GTSAC	1 cut(s)	199
TspDTI	ATGAA	2 cut(s)	17, 354
Vha464I	CTTAAG	1 cut(s)	257
XceI	RCATGY	1 cut(s)	398
XspI	CTAG	3 cut(s)	42, 96, 314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.