Rroxscaffold_3G00225740

UDP-N-acetyl-D-glucosamine:N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine-diphosphoundecaprenol 4-beta-N-acetylglucosaminlytransferase activity

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Reverse (-)
9012158 .. 9013672
1515 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00225740.1

Sequence Viewer

Length: 489 bp
ATGCCAGAGGAGGGTGATGCAATTGAAAATCAGAGAAAGAAAGATAAGAAGAAGCTTGAAGTAGAGAAATCAAAGAAGATGCTAGCTTCTCCTTTCTTCTCAATCTACTGTGGGAATGAGGGGTTGATAAGAAATCAAGCAGTATTGCTTCGGAGCCAAACTCAAAGAGTACCGTCCCACGATGTTGCTGAAGGACATCAATTTAAAAATGCTTCTTTGTTGGTAGACTCTGCTGGTGATCTTGATTCGTCAACCCTTGGAAATGCAATTGAAGAGATGTTAGAGGTTGGATATCCTTTAATAACGATCTCTTCTCTTTTACGGGGAATGAGAGTAAAATGGAAGATATGTTCTAGAGGGGGTCTGAGAGCTGCAAACCCCAATGCCTCTGTAGAGATTGCACAACATGTCATTTCTATCTCTAACCAGCTTATCAAGAGGAAAGAAGAAGAAGACTTAAAGATGGTTTATACTCTATGTAAGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

162

Amino Acids

18.1

Weight (kDa)

8.74

Isoelectric Point (pI)

47.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 225
AcuI CTGAAG 1 cut(s) 210
AfaI GTAC 1 cut(s) 171
AfiI CCNNNNNNNGG 1 cut(s) 11
AflIII ACRYGT 1 cut(s) 406
AgsI TTSAA 3 cut(s) 26, 59, 272
AloI GAACNNNNNNTCC 2 cut(s) 334, 366
AluBI AGCT 4 cut(s) 55, 86, 371, 430
AluI AGCT 4 cut(s) 55, 86, 371, 430
ApeKI GCWGC 1 cut(s) 371
AsuHPI GGTGA 2 cut(s) 26, 248
AsuNHI GCTAGC 1 cut(s) 82
BbsI GAAGAC 1 cut(s) 459
BbvI GCAGC 1 cut(s) 358
BccI CCATC 1 cut(s) 457
BfaI CTAG 2 cut(s) 83, 354
BfmI CTRYAG 1 cut(s) 390
BisI GCNGC 1 cut(s) 372
BlsI GCNGC 1 cut(s) 373
BmiI GGNNCC 1 cut(s) 155
BmsI GCATC 2 cut(s) 7, 69
BmtI GCTAGC 1 cut(s) 86
BpiI GAAGAC 1 cut(s) 459
BplI GAGNNNNNCTC 2 cut(s) 145, 177
BsaJI CCNNGG 1 cut(s) 256
Bsc4I CCNNNNNNNGG 1 cut(s) 11
BseDI CCNNGG 1 cut(s) 256
BseLI CCNNNNNNNGG 1 cut(s) 11
BseMII CTCAG 1 cut(s) 356
BseRI GAGGAG 1 cut(s) 23
BseXI GCAGC 1 cut(s) 358
BslFI GGGAC 1 cut(s) 160
BslI CCNNNNNNNGG 1 cut(s) 11
BsmFI GGGAC 1 cut(s) 160
Bsp143I GATC 2 cut(s) 238, 306
BspCNI CTCAG 1 cut(s) 357
BspLI GGNNCC 1 cut(s) 155
BspOI GCTAGC 1 cut(s) 86
BssECI CCNNGG 1 cut(s) 256
BssMI GATC 2 cut(s) 238, 306
BssT1I CCWWGG 1 cut(s) 256
Bst4CI ACNGT 2 cut(s) 110, 174
Bst6I CTCTTC 2 cut(s) 267, 316
BstC8I GCNNGC 1 cut(s) 84
BstDEI CTNAG 1 cut(s) 365
BstKTI GATC 2 cut(s) 241, 309
BstMBI GATC 2 cut(s) 238, 306
BstNSI RCATGY 1 cut(s) 410
BstSFI CTRYAG 1 cut(s) 390
BstV1I GCAGC 1 cut(s) 358
BstV2I GAAGAC 1 cut(s) 459
Cac8I GCNNGC 1 cut(s) 84
Csp6I GTAC 1 cut(s) 170
CviAII CATG 1 cut(s) 407
CviJI RGCY 5 cut(s) 55, 86, 156, 371, 430
CviKI_1 RGCY 5 cut(s) 55, 86, 156, 371, 430
CviQI GTAC 1 cut(s) 170
DdeI CTNAG 1 cut(s) 365
DpnI GATC 2 cut(s) 240, 308
DpnII GATC 2 cut(s) 238, 306
DraI TTTAAA 1 cut(s) 205
Eam1104I CTCTTC 2 cut(s) 267, 316
EarI CTCTTC 2 cut(s) 267, 316
Eco130I CCWWGG 1 cut(s) 256
Eco32I GATATC 1 cut(s) 293
Eco57I CTGAAG 1 cut(s) 210
EcoRV GATATC 1 cut(s) 293
EcoT14I CCWWGG 1 cut(s) 256
ErhI CCWWGG 1 cut(s) 256
FaeI CATG 1 cut(s) 410
FaiI YATR 4 cut(s) 349, 408, 471, 478
FaqI GGGAC 1 cut(s) 160
FatI CATG 1 cut(s) 406
FblI GTMKAC 1 cut(s) 225
Fnu4HI GCNGC 1 cut(s) 372
Fsp4HI GCNGC 1 cut(s) 372
FspBI CTAG 2 cut(s) 83, 354
GluI GCNGC 1 cut(s) 372
Hin1II CATG 1 cut(s) 410
HincII GTYRAC 1 cut(s) 252
HindII GTYRAC 1 cut(s) 252
HindIII AAGCTT 1 cut(s) 53
HinfI GANTC 2 cut(s) 227, 245
HphI GGTGA 2 cut(s) 26, 248
Hpy166II GTNNAC 2 cut(s) 226, 252
Hpy188I TCNGA 3 cut(s) 33, 153, 366
Hpy188III TCNNGA 3 cut(s) 242, 354, 436
Hpy8I GTNNAC 2 cut(s) 226, 252
HpyAV CCTTC 1 cut(s) 185
HpyCH4III ACNGT 2 cut(s) 110, 174
HpyCH4V TGCA 4 cut(s) 20, 266, 374, 401
HpyF3I CTNAG 1 cut(s) 365
Hsp92II CATG 1 cut(s) 410
Kzo9I GATC 2 cut(s) 238, 306
LmnI GCTCC 1 cut(s) 153
LpnPI CCDG 3 cut(s) 18, 219, 440
Lsp1109I GCAGC 1 cut(s) 358
LweI GCATC 2 cut(s) 7, 69
MaeI CTAG 2 cut(s) 83, 354
MalI GATC 2 cut(s) 240, 308
MboI GATC 2 cut(s) 238, 306
MboII GAAGA 9 cut(s) 61, 88, 88, 284, 303, 355, 458, 461, 464
MfeI CAATTG 2 cut(s) 21, 267
MluCI AATT 3 cut(s) 21, 200, 267
MlyI GAGTC 1 cut(s) 221
MmeI TCCRAC 1 cut(s) 268
MnlI CCTC 6 cut(s) 4, 112, 277, 350, 397, 432
MseI TTAA 3 cut(s) 204, 299, 458
MunI CAATTG 2 cut(s) 21, 267
NdeII GATC 2 cut(s) 238, 306
NheI GCTAGC 1 cut(s) 82
NlaIII CATG 1 cut(s) 410
NlaIV GGNNCC 1 cut(s) 155
NspI RCATGY 1 cut(s) 410
PciI ACATGT 1 cut(s) 406
PfeI GAWTC 1 cut(s) 245
PkrI GCNGC 1 cut(s) 373
PleI GAGTC 1 cut(s) 221
PpsI GAGTC 1 cut(s) 221
PscI ACATGT 1 cut(s) 406
PspN4I GGNNCC 1 cut(s) 155
RsaI GTAC 1 cut(s) 171
RsaNI GTAC 1 cut(s) 170
SaqAI TTAA 3 cut(s) 204, 299, 458
SatI GCNGC 1 cut(s) 372
Sau3AI GATC 2 cut(s) 238, 306
SchI GAGTC 1 cut(s) 221
SetI ASST 5 cut(s) 57, 88, 288, 373, 432
SfaNI GCATC 2 cut(s) 7, 69
SfcI CTRYAG 1 cut(s) 390
Sse9I AATT 3 cut(s) 21, 200, 267
SspMI CTAG 2 cut(s) 83, 354
StyI CCWWGG 1 cut(s) 256
TaaI ACNGT 2 cut(s) 110, 174
TasI AATT 3 cut(s) 21, 200, 267
TfiI GAWTC 1 cut(s) 245
Tru1I TTAA 3 cut(s) 204, 299, 458
Tru9I TTAA 3 cut(s) 204, 299, 458
TseI GCWGC 1 cut(s) 371
XbaI TCTAGA 1 cut(s) 353
XceI RCATGY 1 cut(s) 410
XmiI GTMKAC 1 cut(s) 225
XspI CTAG 2 cut(s) 83, 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.