Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0001676

Physical Location & Seq

Genomic Coordinates Reverse (-)

29350717 .. 29354746

Gene Structure 4030 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG263700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 201 bp

ATGGAAAAGAGATCCAGAAAATCATTTGTGCGAGTGATCTTTAACCATGTTCATCAAGGAGCTCCAAGGGGAAGGACACTACAATCAGGGATGAAGTTTCAGTGCTATGCAACCATGAAATACTTTGGATATTACCCTGCATTGACACCTGATGAGGTTGGTTCTTATTTCCTCATAAACACCCATTTTGACATATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004029 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0008150 GO:0008152 GO:0012505 GO:0016491 GO:0016620 GO:0016903 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aldedh

Protein Analysis

66

Amino Acids

7.75

Weight (kDa)

9.73

Isoelectric Point (pI)

42.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001676)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G66658 AT3G66658
fragaria_vesca	FvH4_4g19600
malus_domestica	MD13G1155400.v1.1 MD16G1154800.v1.1
prunus_persica	Prupe.1G118500_v2.0.a1 Prupe.1G118500_v2.0.a1
pyrus_communis	pycom13g13230 pycom16g13120
rosa_chinensis	RchiOBHm_Chr1g0319361 RchiOBHm_Chr3g0485871 RchiOBHm_Chr4g0424861
rosa_laevigata	RLG00000007414 RLG00000030077
rosa_multiflora	Rmu_sc0005870.1_g000002 Rmu_sc0006754.1_g000006 Rmu_sc0014506.1_g000007 Rmu_sc0016377.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225740 Rroxscaffold_4G00328540 Rroxscaffold_5G00367080
rosa_rugosa	Rorug01G0166300 Rorug02G0293100 Rorug02G0554900 Rorug04G0192400 Rorug04G0199800 Rorug04G0346500
rosa_samantha	Rh1BG349600 Rh1CG003900 Rh1CG038200 Rh1DG031700 Rh1DG139100 Rh1DG263900 Rh2AG629500 Rh2CG592700 Rh2DG371100 Rh2DG650900 Rh2DG656600 Rh3AG263700 Rh3CG371400 Rh4AG036400 Rh4AG043400 Rh4AG077000 Rh4AG257500 Rh4CG273800 Rh4DG258600 Rh7BG306900
rosa_wichuraiana	Rw1G003140 Rw4G022220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	199
AclWI	GGATC	1 cut(s)	6
AluBI	AGCT	1 cut(s)	62
AluI	AGCT	1 cut(s)	62
Alw21I	GWGCWC	1 cut(s)	64
AlwI	GGATC	1 cut(s)	6
BanII	GRGCYC	1 cut(s)	64
Bbv12I	GWGCWC	1 cut(s)	64
BsaJI	CCNNGG	1 cut(s)	65
BseDI	CCNNGG	1 cut(s)	65
BseGI	GGATG	1 cut(s)	96
BsiHKAI	GWGCWC	1 cut(s)	64
Bsp1286I	GDGCHC	1 cut(s)	64
Bsp143I	GATC	2 cut(s)	11, 36
BspPI	GGATC	1 cut(s)	6
BssECI	CCNNGG	1 cut(s)	65
BssMI	GATC	2 cut(s)	11, 36
BssT1I	CCWWGG	1 cut(s)	65
BstF5I	GGATG	1 cut(s)	96
BstKTI	GATC	2 cut(s)	14, 39
BstMBI	GATC	2 cut(s)	11, 36
BstX2I	RGATCY	1 cut(s)	11
BstYI	RGATCY	1 cut(s)	11
BtsCI	GGATG	1 cut(s)	96
BtsIMutI	CAGTG	1 cut(s)	107
CviAII	CATG	2 cut(s)	47, 115
CviJI	RGCY	1 cut(s)	62
CviKI_1	RGCY	1 cut(s)	62
DpnI	GATC	2 cut(s)	13, 38
DpnII	GATC	2 cut(s)	11, 36
Ecl136II	GAGCTC	1 cut(s)	62
Eco130I	CCWWGG	1 cut(s)	65
Eco24I	GRGCYC	1 cut(s)	64
Eco53kI	GAGCTC	1 cut(s)	62
EcoICRI	GAGCTC	1 cut(s)	62
EcoT14I	CCWWGG	1 cut(s)	65
EcoT38I	GRGCYC	1 cut(s)	64
ErhI	CCWWGG	1 cut(s)	65
FaeI	CATG	2 cut(s)	50, 118
FaiI	YATR	6 cut(s)	48, 108, 116, 176, 194, 199
FatI	CATG	2 cut(s)	46, 114
FokI	GGATG	1 cut(s)	103
FriOI	GRGCYC	1 cut(s)	64
Hin1II	CATG	2 cut(s)	50, 118
Hpy188III	TCNNGA	1 cut(s)	15
HpyAV	CCTTC	1 cut(s)	66
HpyCH4V	TGCA	2 cut(s)	110, 140
Hsp92II	CATG	2 cut(s)	50, 118
Kzo9I	GATC	2 cut(s)	11, 36
LmnI	GCTCC	2 cut(s)	59, 67
LpnPI	CCDG	4 cut(s)	28, 72, 150, 162
MalI	GATC	2 cut(s)	13, 38
MboI	GATC	2 cut(s)	11, 36
MflI	RGATCY	1 cut(s)	11
MhlI	GDGCHC	1 cut(s)	64
MnlI	CCTC	2 cut(s)	148, 182
MseI	TTAA	1 cut(s)	42
NdeII	GATC	2 cut(s)	11, 36
NlaIII	CATG	2 cut(s)	50, 118
PsiI	TTATAA	1 cut(s)	199
Psp124BI	GAGCTC	1 cut(s)	64
PsuI	RGATCY	1 cut(s)	11
SacI	GAGCTC	1 cut(s)	64
SaqAI	TTAA	1 cut(s)	42
Sau3AI	GATC	2 cut(s)	11, 36
SduI	GDGCHC	1 cut(s)	64
SetI	ASST	3 cut(s)	64, 151, 159
SgeI	CNNG	9 cut(s)	27, 44, 59, 68, 78, 99, 127, 149, 161
SstI	GAGCTC	1 cut(s)	64
StyI	CCWWGG	1 cut(s)	65
Tru1I	TTAA	1 cut(s)	42
Tru9I	TTAA	1 cut(s)	42
TscAI	CASTG	1 cut(s)	107
TspDTI	ATGAA	3 cut(s)	41, 107, 131
TspRI	CASTG	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.