Rh2DG650900

60s ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0001676
Physical Location & Seq
Reverse (-)
87684937 .. 87689241
4305 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG650900.1

Sequence Viewer

Length: 432 bp
ATGGAGGGAGCTCCAAGGGGAAGGACACTACAATCAGAGACCAAGTTTCAGTGCTATGAACCTGCAACCATGAAATACTTTGGATATTACCATGCATTGACACCTGATGAGGTCAAGGAGCGGGTAGCACTAGCAAGGAAGGCACAAAAAACATCGGCAAAGATCAAGCAAAGACGCATGTCTCAAACGATAGAGATGAGAGTGCATATGGACTGCCCCGGATGCGAGAGCAAGGCTAGAAGGCCATTTAAGATTAATGGTGTTCCTCGTAGACAGGTGAACCAATCTTATGTTATTGGAACTTCAACCAAGGTTGACAGCTCTGGTGTTAACGTGGAGAAGTTTGATGACAAGTACTTTGCCAAGGAGGGTCAAAAGAAGAAAAAGAAGGGAGAAGGCGAGTTCTTTGAAGTGGAGAAGGAGGTGCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L6e Ribosomal_L6e_N

Protein Analysis

143

Amino Acids

16.46

Weight (kDa)

9.63

Isoelectric Point (pI)

43.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L6e PF01159 85 - 141 2.8e-17 Ribosomal protein L6e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 70
AccBSI CCGCTC 1 cut(s) 121
AccI GTMKAC 1 cut(s) 271
AciI CCGC 1 cut(s) 121
AfaI GTAC 1 cut(s) 356
AgsI TTSAA 2 cut(s) 306, 410
AluBI AGCT 2 cut(s) 11, 321
AluI AGCT 2 cut(s) 11, 321
Alw21I GWGCWC 1 cut(s) 13
Alw26I GTCTC 2 cut(s) 32, 186
AoxI GGCC 1 cut(s) 242
ArsI GACNNNNNNTTYG 2 cut(s) 341, 373
AseI ATTAAT 1 cut(s) 255
AsuC2I CCSGG 1 cut(s) 219
AsuHPI GGTGA 1 cut(s) 289
BanII GRGCYC 1 cut(s) 13
Bbv12I GWGCWC 1 cut(s) 13
BcnI CCSGG 1 cut(s) 219
BcoDI GTCTC 2 cut(s) 32, 186
BfaI CTAG 2 cut(s) 131, 237
BfuAI ACCTGC 1 cut(s) 70
BmcAI AGTACT 1 cut(s) 356
Bme1390I CCNGG 1 cut(s) 219
BmrFI CCNGG 1 cut(s) 219
BmsI GCATC 1 cut(s) 212
BoxI GACNNNNGTC 1 cut(s) 178
BpuMI CCSGG 1 cut(s) 219
BsaI GGTCTC 1 cut(s) 32
BsaJI CCNNGG 4 cut(s) 14, 217, 309, 363
BseDI CCNNGG 4 cut(s) 14, 217, 309, 363
BseGI GGATG 1 cut(s) 227
BshFI GGCC 1 cut(s) 244
BsiHKAI GWGCWC 1 cut(s) 13
BsiSI CCGG 1 cut(s) 219
BsmAI GTCTC 2 cut(s) 32, 186
BsnI GGCC 1 cut(s) 244
Bso31I GGTCTC 1 cut(s) 32
Bsp1286I GDGCHC 1 cut(s) 13
Bsp143I GATC 1 cut(s) 162
BspACI CCGC 1 cut(s) 121
BspANI GGCC 1 cut(s) 244
BspMI ACCTGC 1 cut(s) 70
BspTNI GGTCTC 1 cut(s) 32
BsrBI CCGCTC 1 cut(s) 121
BssECI CCNNGG 4 cut(s) 14, 217, 309, 363
BssMI GATC 1 cut(s) 162
BssT1I CCWWGG 3 cut(s) 14, 309, 363
BstF5I GGATG 1 cut(s) 227
BstKTI GATC 1 cut(s) 165
BstMAI GTCTC 2 cut(s) 32, 186
BstMBI GATC 1 cut(s) 162
BstMWI GCNNNNNNNGC 2 cut(s) 140, 222
BstNSI RCATGY 1 cut(s) 181
BstPAI GACNNNNGTC 1 cut(s) 178
BstSCI CCNGG 1 cut(s) 217
BsuRI GGCC 1 cut(s) 244
BtsCI GGATG 1 cut(s) 227
BtsIMutI CAGTG 1 cut(s) 56
BveI ACCTGC 1 cut(s) 70
CseI GACGC 1 cut(s) 183
Csp6I GTAC 1 cut(s) 355
CviAII CATG 3 cut(s) 70, 92, 178
CviJI RGCY 4 cut(s) 11, 236, 244, 321
CviKI_1 RGCY 4 cut(s) 11, 236, 244, 321
CviQI GTAC 1 cut(s) 355
DpnI GATC 1 cut(s) 164
DpnII GATC 1 cut(s) 162
Ecl136II GAGCTC 1 cut(s) 11
Eco130I CCWWGG 3 cut(s) 14, 309, 363
Eco24I GRGCYC 1 cut(s) 13
Eco31I GGTCTC 1 cut(s) 32
Eco53kI GAGCTC 1 cut(s) 11
EcoICRI GAGCTC 1 cut(s) 11
EcoT14I CCWWGG 3 cut(s) 14, 309, 363
EcoT22I ATGCAT 1 cut(s) 97
EcoT38I GRGCYC 1 cut(s) 13
ErhI CCWWGG 3 cut(s) 14, 309, 363
FaeI CATG 3 cut(s) 73, 95, 181
FaiI YATR 7 cut(s) 57, 71, 93, 179, 207, 209, 291
FatI CATG 3 cut(s) 69, 91, 177
FauI CCCGC 1 cut(s) 114
FauNDI CATATG 1 cut(s) 207
FblI GTMKAC 1 cut(s) 271
FokI GGATG 1 cut(s) 234
FriOI GRGCYC 1 cut(s) 13
FspBI CTAG 2 cut(s) 131, 237
HaeIII GGCC 1 cut(s) 244
HapII CCGG 1 cut(s) 219
HgaI GACGC 1 cut(s) 183
Hin1II CATG 3 cut(s) 73, 95, 181
HincII GTYRAC 2 cut(s) 316, 331
HindII GTYRAC 2 cut(s) 316, 331
HpaI GTTAAC 1 cut(s) 331
HpaII CCGG 1 cut(s) 219
HphI GGTGA 1 cut(s) 289
Hpy166II GTNNAC 4 cut(s) 272, 280, 316, 331
Hpy188I TCNGA 1 cut(s) 37
Hpy8I GTNNAC 4 cut(s) 272, 280, 316, 331
HpyAV CCTTC 6 cut(s) 15, 133, 234, 382, 389, 412
HpyCH4IV ACGT 1 cut(s) 333
HpyCH4V TGCA 3 cut(s) 65, 95, 205
HpyF10VI GCNNNNNNNGC 2 cut(s) 140, 222
HpySE526I ACGT 1 cut(s) 333
Hsp92II CATG 3 cut(s) 73, 95, 181
KspAI GTTAAC 1 cut(s) 331
Kzo9I GATC 1 cut(s) 162
LmnI GCTCC 3 cut(s) 8, 16, 118
LpnPI CCDG 5 cut(s) 75, 117, 232, 260, 309
LweI GCATC 1 cut(s) 212
MaeI CTAG 2 cut(s) 131, 237
MaeII ACGT 1 cut(s) 333
MalI GATC 1 cut(s) 164
MbiI CCGCTC 1 cut(s) 121
MboI GATC 1 cut(s) 162
MboII GAAGA 1 cut(s) 391
MhlI GDGCHC 1 cut(s) 13
MnlI CCTC 4 cut(s) 103, 276, 361, 415
Mph1103I ATGCAT 1 cut(s) 97
MseI TTAA 4 cut(s) 249, 255, 330, 430
MspI CCGG 1 cut(s) 219
MspR9I CCNGG 1 cut(s) 219
MwoI GCNNNNNNNGC 2 cut(s) 140, 222
NciI CCSGG 1 cut(s) 219
NdeI CATATG 1 cut(s) 207
NdeII GATC 1 cut(s) 162
NlaIII CATG 3 cut(s) 73, 95, 181
NsiI ATGCAT 1 cut(s) 97
NspI RCATGY 1 cut(s) 181
PshAI GACNNNNGTC 1 cut(s) 178
PshBI ATTAAT 1 cut(s) 255
Psp124BI GAGCTC 1 cut(s) 13
RsaI GTAC 1 cut(s) 356
RsaNI GTAC 1 cut(s) 355
SacI GAGCTC 1 cut(s) 13
SaqAI TTAA 4 cut(s) 249, 255, 330, 430
Sau3AI GATC 1 cut(s) 162
ScaI AGTACT 1 cut(s) 356
ScrFI CCNGG 1 cut(s) 219
SduI GDGCHC 1 cut(s) 13
SetI ASST 9 cut(s) 13, 64, 106, 114, 279, 315, 323, 336, 426
SfaNI GCATC 1 cut(s) 212
SsiI CCGC 1 cut(s) 121
SspMI CTAG 2 cut(s) 131, 237
SstI GAGCTC 1 cut(s) 13
StyD4I CCNGG 1 cut(s) 217
StyI CCWWGG 3 cut(s) 14, 309, 363
TaiI ACGT 1 cut(s) 336
TatI WGTACW 1 cut(s) 354
Tru1I TTAA 4 cut(s) 249, 255, 330, 430
Tru9I TTAA 4 cut(s) 249, 255, 330, 430
TscAI CASTG 1 cut(s) 56
TspDTI ATGAA 2 cut(s) 72, 86
TspRI CASTG 1 cut(s) 56
VspI ATTAAT 1 cut(s) 255
XceI RCATGY 1 cut(s) 181
XmiI GTMKAC 1 cut(s) 271
XspI CTAG 2 cut(s) 131, 237
ZrmI AGTACT 1 cut(s) 356
Zsp2I ATGCAT 1 cut(s) 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.