Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005870.1

Orthogroup ID

OG0001676

Physical Location & Seq

Genomic Coordinates Reverse (-)

3866 .. 6241

Gene Structure 2376 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005870.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

atggagtactgggttgagtttaaaaaagagaaaacccctcatgatttttataatttggataatcatatgcatcagtttaagcctttaagggaagcagcgcgaggtaagcatctcaatctcaacatatgcatcggagccaaaaaggtgaaagctgaatgtcaacagttcagggaatattgtagggcaggaaatggagaaggcttactgaaactatacctggatggttcttcaaacaaatcaagacagtggatttctcttacaacaacttcacttgggaaagctcaggctcacttcctactgaatgtgatagagggagtgttgttggacgatgggaatcagagccaggagaacagtttcatatatggacctccaagggaaaggacagcgcaatcagagaccaagtttcagtgctatgaacctgcaatcatgaaatacttgggatattaccctgcattgacacctgatgaggtcaaggagcgggtagcactagcaacgaagccacaaaaatcatgggcaaatagtagcttcaagcaaagacgcctatttcttcggattattctcaagtatataatagaacaccaagaccttataagtgagttcagttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004029 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0008150 GO:0008152 GO:0012505 GO:0016491 GO:0016620 GO:0016903 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aldedh

Protein Analysis

201

Amino Acids

23.37

Weight (kDa)

9.06

Isoelectric Point (pI)

35.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001676)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G66658 AT3G66658
fragaria_vesca	FvH4_4g19600
malus_domestica	MD13G1155400.v1.1 MD16G1154800.v1.1
prunus_persica	Prupe.1G118500_v2.0.a1 Prupe.1G118500_v2.0.a1
pyrus_communis	pycom13g13230 pycom16g13120
rosa_chinensis	RchiOBHm_Chr1g0319361 RchiOBHm_Chr3g0485871 RchiOBHm_Chr4g0424861
rosa_laevigata	RLG00000007414 RLG00000030077
rosa_multiflora	Rmu_sc0005870.1_g000002 Rmu_sc0006754.1_g000006 Rmu_sc0014506.1_g000007 Rmu_sc0016377.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225740 Rroxscaffold_4G00328540 Rroxscaffold_5G00367080
rosa_rugosa	Rorug01G0166300 Rorug02G0293100 Rorug02G0554900 Rorug04G0192400 Rorug04G0199800 Rorug04G0346500
rosa_samantha	Rh1BG349600 Rh1CG003900 Rh1CG038200 Rh1DG031700 Rh1DG139100 Rh1DG263900 Rh2AG629500 Rh2CG592700 Rh2DG371100 Rh2DG650900 Rh2DG656600 Rh3AG263700 Rh3CG371400 Rh4AG036400 Rh4AG043400 Rh4AG077000 Rh4AG257500 Rh4CG273800 Rh4DG258600 Rh7BG306900
rosa_wichuraiana	Rw1G003140 Rw4G022220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	51, 590
Acc36I	ACCTGC	1 cut(s)	427
AccBSI	CCGCTC	1 cut(s)	478
AccII	CGCG	1 cut(s)	100
AciI	CCGC	1 cut(s)	478
AcyI	GRCGYC	1 cut(s)	538
AfaI	GTAC	1 cut(s)	8
AgsI	TTSAA	2 cut(s)	231, 529
AjnI	CCWGG	2 cut(s)	216, 342
AluBI	AGCT	3 cut(s)	152, 281, 525
AluI	AGCT	3 cut(s)	152, 281, 525
Alw26I	GTCTC	1 cut(s)	389
ApeKI	GCWGC	1 cut(s)	95
Asp700I	GAANNNNTTC	1 cut(s)	353
AspLEI	GCGC	2 cut(s)	100, 388
AspS9I	GGNCC	1 cut(s)	365
AsuHPI	GGTGA	1 cut(s)	157
AvaII	GGWCC	1 cut(s)	365
BbvI	GCAGC	1 cut(s)	107
BccI	CCATC	2 cut(s)	215, 323
BciT130I	CCWGG	2 cut(s)	218, 344
BcoDI	GTCTC	1 cut(s)	389
BfaI	CTAG	1 cut(s)	488
BfuAI	ACCTGC	1 cut(s)	427
BisI	GCNGC	1 cut(s)	96
BlsI	GCNGC	1 cut(s)	97
BmcAI	AGTACT	1 cut(s)	8
Bme1390I	CCNGG	2 cut(s)	218, 344
Bme18I	GGWCC	1 cut(s)	365
BmgT120I	GGNCC	1 cut(s)	365
BmiI	GGNNCC	1 cut(s)	136
BmrFI	CCNGG	2 cut(s)	218, 344
BmrI	ACTGGG	1 cut(s)	19
BmsI	GCATC	3 cut(s)	79, 118, 138
BmuI	ACTGGG	1 cut(s)	19
Bpu10I	CCTNAGC	1 cut(s)	282
BpuEI	CTTGAG	1 cut(s)	545
BsaBI	GATNNNNATC	1 cut(s)	333
BsaI	GGTCTC	1 cut(s)	389
BsaJI	CCNNGG	1 cut(s)	371
Bse1I	ACTGG	1 cut(s)	14
Bse8I	GATNNNNATC	1 cut(s)	333
BseBI	CCWGG	2 cut(s)	218, 344
BseDI	CCNNGG	1 cut(s)	371
BseGI	GGATG	1 cut(s)	226
BseJI	GATNNNNATC	1 cut(s)	333
BseMII	CTCAG	1 cut(s)	296
BseNI	ACTGG	1 cut(s)	14
BseXI	GCAGC	1 cut(s)	107
Bsh1236I	CGCG	1 cut(s)	100
BsmAI	GTCTC	1 cut(s)	389
Bso31I	GGTCTC	1 cut(s)	389
BspACI	CCGC	1 cut(s)	478
BspCNI	CTCAG	1 cut(s)	295
BspFNI	CGCG	1 cut(s)	100
BspHI	TCATGA	2 cut(s)	40, 426
BspLI	GGNNCC	1 cut(s)	136
BspMI	ACCTGC	1 cut(s)	427
BspTNI	GGTCTC	1 cut(s)	389
BsrBI	CCGCTC	1 cut(s)	478
BsrI	ACTGG	1 cut(s)	14
BssECI	CCNNGG	1 cut(s)	371
BssNI	GRCGYC	1 cut(s)	538
BssT1I	CCWWGG	1 cut(s)	371
Bst2UI	CCWGG	2 cut(s)	218, 344
Bst4CI	ACNGT	3 cut(s)	165, 246, 353
BstACI	GRCGYC	1 cut(s)	538
BstDEI	CTNAG	1 cut(s)	282
BstF5I	GGATG	1 cut(s)	226
BstFNI	CGCG	1 cut(s)	100
BstHHI	GCGC	2 cut(s)	100, 388
BstMAI	GTCTC	1 cut(s)	389
BstMWI	GCNNNNNNNGC	1 cut(s)	106
BstNI	CCWGG	2 cut(s)	218, 344
BstSCI	CCNGG	2 cut(s)	216, 342
BstUI	CGCG	1 cut(s)	100
BstV1I	GCAGC	1 cut(s)	107
BtsCI	GGATG	1 cut(s)	226
BtsIMutI	CAGTG	2 cut(s)	251, 413
BveI	ACCTGC	1 cut(s)	427
CciI	TCATGA	2 cut(s)	40, 426
CfoI	GCGC	2 cut(s)	100, 388
Cfr13I	GGNCC	1 cut(s)	365
CseI	GACGC	1 cut(s)	546
Csp6I	GTAC	1 cut(s)	7
CviAII	CATG	3 cut(s)	41, 427, 510
CviJI	RGCY	9 cut(s)	82, 137, 152, 201, 281, 287, 342, 499, 525
CviKI_1	RGCY	9 cut(s)	82, 137, 152, 201, 281, 287, 342, 499, 525
CviQI	GTAC	1 cut(s)	7
DdeI	CTNAG	1 cut(s)	282
DraI	TTTAAA	1 cut(s)	22
Eco130I	CCWWGG	1 cut(s)	371
Eco31I	GGTCTC	1 cut(s)	389
Eco47I	GGWCC	1 cut(s)	365
EcoRII	CCWGG	2 cut(s)	216, 342
EcoT14I	CCWWGG	1 cut(s)	371
EcoT22I	ATGCAT	2 cut(s)	72, 131
ErhI	CCWWGG	1 cut(s)	371
FaeI	CATG	3 cut(s)	44, 430, 513
FatI	CATG	3 cut(s)	40, 426, 509
FauI	CCCGC	1 cut(s)	471
FauNDI	CATATG	2 cut(s)	66, 125
Fnu4HI	GCNGC	1 cut(s)	96
FokI	GGATG	1 cut(s)	233
Fsp4HI	GCNGC	1 cut(s)	96
FspBI	CTAG	1 cut(s)	488
GlaI	GCGC	2 cut(s)	99, 387
GluI	GCNGC	1 cut(s)	96
HgaI	GACGC	1 cut(s)	546
HhaI	GCGC	2 cut(s)	100, 388
Hin1I	GRCGYC	1 cut(s)	538
Hin1II	CATG	3 cut(s)	44, 430, 513
Hin6I	GCGC	2 cut(s)	98, 386
HinP1I	GCGC	2 cut(s)	98, 386
HincII	GTYRAC	1 cut(s)	161
HindII	GTYRAC	1 cut(s)	161
HinfI	GANTC	1 cut(s)	334
HphI	GGTGA	1 cut(s)	157
Hpy166II	GTNNAC	1 cut(s)	161
Hpy188I	TCNGA	4 cut(s)	134, 339, 394, 552
Hpy188III	TCNNGA	3 cut(s)	41, 240, 427
Hpy8I	GTNNAC	1 cut(s)	161
HpyAV	CCTTC	1 cut(s)	191
HpyCH4III	ACNGT	3 cut(s)	165, 246, 353
HpyCH4V	TGCA	4 cut(s)	70, 129, 422, 452
HpyF10VI	GCNNNNNNNGC	1 cut(s)	106
HpyF3I	CTNAG	1 cut(s)	282
Hsp92I	GRCGYC	1 cut(s)	538
Hsp92II	CATG	3 cut(s)	44, 430, 513
HspAI	GCGC	2 cut(s)	98, 386
LmnI	GCTCC	2 cut(s)	134, 475
Lsp1109I	GCAGC	1 cut(s)	107
LweI	GCATC	3 cut(s)	79, 118, 138
MaeI	CTAG	1 cut(s)	488
MbiI	CCGCTC	1 cut(s)	478
MboII	GAAGA	2 cut(s)	219, 539
MluCI	AATT	1 cut(s)	52
MmeI	TCCRAC	1 cut(s)	303
MnlI	CCTC	5 cut(s)	48, 95, 304, 378, 460
Mph1103I	ATGCAT	2 cut(s)	72, 131
MroXI	GAANNNNTTC	1 cut(s)	353
MseI	TTAA	3 cut(s)	21, 78, 86
MspR9I	CCNGG	2 cut(s)	218, 344
MvaI	CCWGG	2 cut(s)	218, 344
MvnI	CGCG	1 cut(s)	100
MwoI	GCNNNNNNNGC	1 cut(s)	106
NdeI	CATATG	2 cut(s)	66, 125
NlaIII	CATG	3 cut(s)	44, 430, 513
NlaIV	GGNNCC	1 cut(s)	136
NsiI	ATGCAT	2 cut(s)	72, 131
PagI	TCATGA	2 cut(s)	40, 426
PdmI	GAANNNNTTC	1 cut(s)	353
PfeI	GAWTC	1 cut(s)	334
PkrI	GCNGC	1 cut(s)	97
PsiI	TTATAA	2 cut(s)	51, 590
Psp6I	CCWGG	2 cut(s)	216, 342
PspGI	CCWGG	2 cut(s)	216, 342
PspN4I	GGNNCC	1 cut(s)	136
PspPI	GGNCC	1 cut(s)	365
RsaI	GTAC	1 cut(s)	8
RsaNI	GTAC	1 cut(s)	7
SaqAI	TTAA	3 cut(s)	21, 78, 86
SatI	GCNGC	1 cut(s)	96
Sau96I	GGNCC	1 cut(s)	365
ScaI	AGTACT	1 cut(s)	8
ScrFI	CCNGG	2 cut(s)	218, 344
SfaNI	GCATC	3 cut(s)	79, 118, 138
SinI	GGWCC	1 cut(s)	365
SmlI	CTYRAG	1 cut(s)	560
SmoI	CTYRAG	1 cut(s)	560
Sse9I	AATT	1 cut(s)	52
SsiI	CCGC	1 cut(s)	478
SspI	AATATT	1 cut(s)	176
SspMI	CTAG	1 cut(s)	488
StyD4I	CCNGG	2 cut(s)	216, 342
StyI	CCWWGG	1 cut(s)	371
TaaI	ACNGT	3 cut(s)	165, 246, 353
TasI	AATT	1 cut(s)	52
TatI	WGTACW	1 cut(s)	6
TfiI	GAWTC	1 cut(s)	334
Tru1I	TTAA	3 cut(s)	21, 78, 86
Tru9I	TTAA	3 cut(s)	21, 78, 86
TscAI	CASTG	2 cut(s)	251, 413
TseI	GCWGC	1 cut(s)	95
TspDTI	ATGAA	3 cut(s)	346, 429, 443
TspRI	CASTG	2 cut(s)	251, 413
VpaK11BI	GGWCC	1 cut(s)	365
XcmI	CCANNNNNNNNNTGG	1 cut(s)	507
XmnI	GAANNNNTTC	1 cut(s)	353
XspI	CTAG	1 cut(s)	488
ZrmI	AGTACT	1 cut(s)	8
Zsp2I	ATGCAT	2 cut(s)	72, 131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.