Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0001676

Physical Location & Seq

Genomic Coordinates Reverse (-)

15620499 .. 15622871

Gene Structure 2373 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG077000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGTTGATTGGGAAGAGGCTCCGGTTGCAGGGACCTCCAAGGAGGAGGACACTACAATCAGAGTCCAAGGTTCAGAACTATGAACCTGCAACCATGAAATACTTTGGATATCACCCTGCATTGACACTTGATGAGGTCAAGGAGCGGGTACCACTAGCAAGGAACAGAAAAAACATCGGCAAAGATCAAGCAAGGACGCATGTTTCTTCGGATTGTACTCTCAAGTACATAATAGAACGCCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004029 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0008150 GO:0008152 GO:0012505 GO:0016491 GO:0016620 GO:0016903 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aldedh

Protein Analysis

81

Amino Acids

9.47

Weight (kDa)

10.22

Isoelectric Point (pI)

75.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001676)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G66658 AT3G66658
fragaria_vesca	FvH4_4g19600
malus_domestica	MD13G1155400.v1.1 MD16G1154800.v1.1
prunus_persica	Prupe.1G118500_v2.0.a1 Prupe.1G118500_v2.0.a1
pyrus_communis	pycom13g13230 pycom16g13120
rosa_chinensis	RchiOBHm_Chr1g0319361 RchiOBHm_Chr3g0485871 RchiOBHm_Chr4g0424861
rosa_laevigata	RLG00000007414 RLG00000030077
rosa_multiflora	Rmu_sc0005870.1_g000002 Rmu_sc0006754.1_g000006 Rmu_sc0014506.1_g000007 Rmu_sc0016377.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225740 Rroxscaffold_4G00328540 Rroxscaffold_5G00367080
rosa_rugosa	Rorug01G0166300 Rorug02G0293100 Rorug02G0554900 Rorug04G0192400 Rorug04G0199800 Rorug04G0346500
rosa_samantha	Rh1BG349600 Rh1CG003900 Rh1CG038200 Rh1DG031700 Rh1DG139100 Rh1DG263900 Rh2AG629500 Rh2CG592700 Rh2DG371100 Rh2DG650900 Rh2DG656600 Rh3AG263700 Rh3CG371400 Rh4AG036400 Rh4AG043400 Rh4AG077000 Rh4AG257500 Rh4CG273800 Rh4DG258600 Rh7BG306900
rosa_wichuraiana	Rw1G003140 Rw4G022220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	94
Acc65I	GGTACC	1 cut(s)	148
AccB1I	GGYRCC	1 cut(s)	148
AccBSI	CCGCTC	1 cut(s)	145
AciI	CCGC	1 cut(s)	145
AfaI	GTAC	3 cut(s)	150, 217, 227
AfiI	CCNNNNNNNGG	1 cut(s)	28
Asp718I	GGTACC	1 cut(s)	148
AspS9I	GGNCC	1 cut(s)	32
AsuHPI	GGTGA	1 cut(s)	104
AvaII	GGWCC	1 cut(s)	32
BanI	GGYRCC	1 cut(s)	148
BfaI	CTAG	1 cut(s)	155
BfuAI	ACCTGC	1 cut(s)	94
Bme18I	GGWCC	1 cut(s)	32
BmgT120I	GGNCC	1 cut(s)	32
BmiI	GGNNCC	3 cut(s)	20, 33, 150
BpuEI	CTTGAG	1 cut(s)	206
BsaJI	CCNNGG	2 cut(s)	38, 66
BsaWI	WCCGGW	1 cut(s)	21
Bsc4I	CCNNNNNNNGG	1 cut(s)	28
BseDI	CCNNGG	2 cut(s)	38, 66
BseLI	CCNNNNNNNGG	1 cut(s)	28
BseRI	GAGGAG	1 cut(s)	58
BshNI	GGYRCC	1 cut(s)	148
BsiSI	CCGG	1 cut(s)	22
BslFI	GGGAC	1 cut(s)	45
BslI	CCNNNNNNNGG	1 cut(s)	28
BsmFI	GGGAC	1 cut(s)	45
Bsp143I	GATC	1 cut(s)	184
BspACI	CCGC	1 cut(s)	145
BspLI	GGNNCC	3 cut(s)	20, 33, 150
BspMI	ACCTGC	1 cut(s)	94
BspT107I	GGYRCC	1 cut(s)	148
BsrBI	CCGCTC	1 cut(s)	145
BssECI	CCNNGG	2 cut(s)	38, 66
BssMI	GATC	1 cut(s)	184
BssT1I	CCWWGG	2 cut(s)	38, 66
Bst6I	CTCTTC	1 cut(s)	8
BstKTI	GATC	1 cut(s)	187
BstMBI	GATC	1 cut(s)	184
BstMWI	GCNNNNNNNGC	1 cut(s)	25
BstNSI	RCATGY	1 cut(s)	203
BveI	ACCTGC	1 cut(s)	94
Cfr13I	GGNCC	1 cut(s)	32
CseI	GACGC	1 cut(s)	205
Csp6I	GTAC	3 cut(s)	149, 216, 226
CviAII	CATG	2 cut(s)	94, 200
CviJI	RGCY	1 cut(s)	19
CviKI_1	RGCY	1 cut(s)	19
CviQI	GTAC	3 cut(s)	149, 216, 226
DpnI	GATC	1 cut(s)	186
DpnII	GATC	1 cut(s)	184
Eam1104I	CTCTTC	1 cut(s)	8
EarI	CTCTTC	1 cut(s)	8
Eco130I	CCWWGG	2 cut(s)	38, 66
Eco32I	GATATC	1 cut(s)	110
Eco47I	GGWCC	1 cut(s)	32
EcoO109I	RGGNCCY	1 cut(s)	32
EcoRV	GATATC	1 cut(s)	110
EcoT14I	CCWWGG	2 cut(s)	38, 66
ErhI	CCWWGG	2 cut(s)	38, 66
FaeI	CATG	2 cut(s)	97, 203
FaiI	YATR	5 cut(s)	81, 95, 201, 230, 244
FaqI	GGGAC	1 cut(s)	45
FatI	CATG	2 cut(s)	93, 199
FauI	CCCGC	1 cut(s)	138
FspBI	CTAG	1 cut(s)	155
HapII	CCGG	1 cut(s)	22
HgaI	GACGC	1 cut(s)	205
Hin1II	CATG	2 cut(s)	97, 203
HinfI	GANTC	1 cut(s)	62
HpaII	CCGG	1 cut(s)	22
HphI	GGTGA	1 cut(s)	104
Hpy188I	TCNGA	3 cut(s)	61, 75, 211
HpyCH4V	TGCA	3 cut(s)	28, 89, 119
HpyF10VI	GCNNNNNNNGC	1 cut(s)	25
Hsp92II	CATG	2 cut(s)	97, 203
KpnI	GGTACC	1 cut(s)	152
Kzo9I	GATC	1 cut(s)	184
LmnI	GCTCC	2 cut(s)	24, 142
LpnPI	CCDG	4 cut(s)	14, 35, 99, 129
MaeI	CTAG	1 cut(s)	155
MalI	GATC	1 cut(s)	186
MbiI	CCGCTC	1 cut(s)	145
MboI	GATC	1 cut(s)	184
MboII	GAAGA	2 cut(s)	25, 198
MlyI	GAGTC	1 cut(s)	71
MnlI	CCTC	5 cut(s)	9, 36, 39, 45, 127
MspI	CCGG	1 cut(s)	22
MwoI	GCNNNNNNNGC	1 cut(s)	25
NdeII	GATC	1 cut(s)	184
NlaIII	CATG	2 cut(s)	97, 203
NlaIV	GGNNCC	3 cut(s)	20, 33, 150
NspI	RCATGY	1 cut(s)	203
PleI	GAGTC	1 cut(s)	70
PpsI	GAGTC	1 cut(s)	70
PpuMI	RGGWCCY	1 cut(s)	32
Psp5II	RGGWCCY	1 cut(s)	32
PspN4I	GGNNCC	3 cut(s)	20, 33, 150
PspPI	GGNCC	1 cut(s)	32
PspPPI	RGGWCCY	1 cut(s)	32
RsaI	GTAC	3 cut(s)	150, 217, 227
RsaNI	GTAC	3 cut(s)	149, 216, 226
Sau3AI	GATC	1 cut(s)	184
Sau96I	GGNCC	1 cut(s)	32
SchI	GAGTC	1 cut(s)	71
SetI	ASST	4 cut(s)	37, 72, 88, 138
SinI	GGWCC	1 cut(s)	32
SmlI	CTYRAG	1 cut(s)	221
SmoI	CTYRAG	1 cut(s)	221
SsiI	CCGC	1 cut(s)	145
SspMI	CTAG	1 cut(s)	155
StyI	CCWWGG	2 cut(s)	38, 66
TatI	WGTACW	2 cut(s)	215, 225
TspDTI	ATGAA	2 cut(s)	96, 110
VpaK11BI	GGWCC	1 cut(s)	32
XceI	RCATGY	1 cut(s)	203
XspI	CTAG	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.