Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0001676

Physical Location & Seq

Genomic Coordinates Forward (+)

29425417 .. 29428301

Gene Structure 2885 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG139100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGTTGATTGGGAAGAGGCTCCGGTTGCAGGGACCTCCAAGGAGGACACTACAATCAGAGTCCAAGGTTCAGAACTATGAACCTGCAACCATGAAATACTTTGGATATCACCCTGCATTGACACTTGATGAGGCAAAACAAAAGCTCAAGCTCATCTGGAAATCCAGCCAATCTAAAAGTTTAGGCCCATCTACTAAGGACATCAAGCTTGAATCTGCTAAGGACACCCAAACTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004029 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0008150 GO:0008152 GO:0012505 GO:0016491 GO:0016620 GO:0016903 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aldedh

Protein Analysis

79

Amino Acids

9.02

Weight (kDa)

9.87

Isoelectric Point (pI)

60.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001676)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G66658 AT3G66658
fragaria_vesca	FvH4_4g19600
malus_domestica	MD13G1155400.v1.1 MD16G1154800.v1.1
prunus_persica	Prupe.1G118500_v2.0.a1 Prupe.1G118500_v2.0.a1
pyrus_communis	pycom13g13230 pycom16g13120
rosa_chinensis	RchiOBHm_Chr1g0319361 RchiOBHm_Chr3g0485871 RchiOBHm_Chr4g0424861
rosa_laevigata	RLG00000007414 RLG00000030077
rosa_multiflora	Rmu_sc0005870.1_g000002 Rmu_sc0006754.1_g000006 Rmu_sc0014506.1_g000007 Rmu_sc0016377.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225740 Rroxscaffold_4G00328540 Rroxscaffold_5G00367080
rosa_rugosa	Rorug01G0166300 Rorug02G0293100 Rorug02G0554900 Rorug04G0192400 Rorug04G0199800 Rorug04G0346500
rosa_samantha	Rh1BG349600 Rh1CG003900 Rh1CG038200 Rh1DG031700 Rh1DG139100 Rh1DG263900 Rh2AG629500 Rh2CG592700 Rh2DG371100 Rh2DG650900 Rh2DG656600 Rh3AG263700 Rh3CG371400 Rh4AG036400 Rh4AG043400 Rh4AG077000 Rh4AG257500 Rh4CG273800 Rh4DG258600 Rh7BG306900
rosa_wichuraiana	Rw1G003140 Rw4G022220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	91
AfiI	CCNNNNNNNGG	1 cut(s)	28
AgsI	TTSAA	1 cut(s)	212
AluBI	AGCT	3 cut(s)	145, 151, 208
AluI	AGCT	3 cut(s)	145, 151, 208
AoxI	GGCC	1 cut(s)	184
AspS9I	GGNCC	2 cut(s)	32, 185
AsuHPI	GGTGA	1 cut(s)	101
AvaII	GGWCC	1 cut(s)	32
BccI	CCATC	1 cut(s)	196
BfuAI	ACCTGC	1 cut(s)	91
Bme18I	GGWCC	1 cut(s)	32
BmgT120I	GGNCC	2 cut(s)	32, 185
BmiI	GGNNCC	2 cut(s)	20, 33
Bpu10I	CCTNAGC	1 cut(s)	219
BpuEI	CTTGAG	1 cut(s)	131
BsaJI	CCNNGG	2 cut(s)	38, 63
BsaWI	WCCGGW	1 cut(s)	21
Bsc4I	CCNNNNNNNGG	1 cut(s)	28
BseDI	CCNNGG	2 cut(s)	38, 63
BseLI	CCNNNNNNNGG	1 cut(s)	28
BseMII	CTCAG	1 cut(s)	225
BshFI	GGCC	1 cut(s)	186
BsiSI	CCGG	1 cut(s)	22
BslFI	GGGAC	1 cut(s)	45
BslI	CCNNNNNNNGG	1 cut(s)	28
BsmFI	GGGAC	1 cut(s)	45
BsnI	GGCC	1 cut(s)	186
BspANI	GGCC	1 cut(s)	186
BspCNI	CTCAG	1 cut(s)	226
BspLI	GGNNCC	2 cut(s)	20, 33
BspMI	ACCTGC	1 cut(s)	91
BssECI	CCNNGG	2 cut(s)	38, 63
BssT1I	CCWWGG	2 cut(s)	38, 63
Bst6I	CTCTTC	1 cut(s)	8
BstDEI	CTNAG	3 cut(s)	195, 219, 234
BstMWI	GCNNNNNNNGC	1 cut(s)	25
BsuRI	GGCC	1 cut(s)	186
BveI	ACCTGC	1 cut(s)	91
Cfr13I	GGNCC	2 cut(s)	32, 185
CviAII	CATG	1 cut(s)	91
CviJI	RGCY	6 cut(s)	19, 145, 151, 168, 186, 208
CviKI_1	RGCY	6 cut(s)	19, 145, 151, 168, 186, 208
DdeI	CTNAG	3 cut(s)	195, 219, 234
Eam1104I	CTCTTC	1 cut(s)	8
EarI	CTCTTC	1 cut(s)	8
Eco130I	CCWWGG	2 cut(s)	38, 63
Eco32I	GATATC	1 cut(s)	107
Eco47I	GGWCC	1 cut(s)	32
EcoO109I	RGGNCCY	1 cut(s)	32
EcoRV	GATATC	1 cut(s)	107
EcoT14I	CCWWGG	2 cut(s)	38, 63
ErhI	CCWWGG	2 cut(s)	38, 63
FaeI	CATG	1 cut(s)	94
FaiI	YATR	2 cut(s)	78, 92
FaqI	GGGAC	1 cut(s)	45
FatI	CATG	1 cut(s)	90
HaeIII	GGCC	1 cut(s)	186
HapII	CCGG	1 cut(s)	22
Hin1II	CATG	1 cut(s)	94
HindIII	AAGCTT	1 cut(s)	206
HinfI	GANTC	2 cut(s)	59, 212
HpaII	CCGG	1 cut(s)	22
HphI	GGTGA	1 cut(s)	101
Hpy188I	TCNGA	2 cut(s)	58, 72
Hpy188III	TCNNGA	1 cut(s)	157
HpyCH4V	TGCA	3 cut(s)	28, 86, 116
HpyF10VI	GCNNNNNNNGC	1 cut(s)	25
HpyF3I	CTNAG	3 cut(s)	195, 219, 234
Hsp92II	CATG	1 cut(s)	94
LmnI	GCTCC	1 cut(s)	24
LpnPI	CCDG	6 cut(s)	14, 35, 96, 126, 142, 178
MboII	GAAGA	1 cut(s)	25
MlyI	GAGTC	1 cut(s)	68
MnlI	CCTC	4 cut(s)	9, 36, 45, 124
MspI	CCGG	1 cut(s)	22
MwoI	GCNNNNNNNGC	1 cut(s)	25
NlaIII	CATG	1 cut(s)	94
NlaIV	GGNNCC	2 cut(s)	20, 33
PfeI	GAWTC	1 cut(s)	212
PleI	GAGTC	1 cut(s)	67
PpsI	GAGTC	1 cut(s)	67
PpuMI	RGGWCCY	1 cut(s)	32
Psp5II	RGGWCCY	1 cut(s)	32
PspN4I	GGNNCC	2 cut(s)	20, 33
PspPI	GGNCC	2 cut(s)	32, 185
PspPPI	RGGWCCY	1 cut(s)	32
Sau96I	GGNCC	2 cut(s)	32, 185
SchI	GAGTC	1 cut(s)	68
SetI	ASST	6 cut(s)	37, 69, 85, 147, 153, 210
SinI	GGWCC	1 cut(s)	32
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
StyI	CCWWGG	2 cut(s)	38, 63
TfiI	GAWTC	1 cut(s)	212
TspDTI	ATGAA	2 cut(s)	93, 107
VpaK11BI	GGWCC	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.